BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1609_D08_G1
5ZT.seq
(500 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.026 Ncr_G_C2.026 141 6e-33
NCR_G_C2.027 Ncr_G_C2.027 44 0.001
NCR_G_C2.042_6 Ncr_G_C2.042_6.seq Continuation (6 of 6) of Ncr_G... 42 0.004
NCR_G_C2.042_5 Ncr_G_C2.042_5.seq Continuation (5 of 6) of Ncr_G... 42 0.004
NCR_G_C2.038 Ncr_G_C2.038 36 0.24
NCR_G_C2.255 Ncr_G_C2.255 34 0.93
NCR_G_C2.217 Ncr_G_C2.217 34 0.93
NCR_G_C2.850 Ncr_G_C2.850 32 3.7
NCR_G_C2.687 Ncr_G_C2.687 32 3.7
NCR_G_C2.437 Ncr_G_C2.437 32 3.7
NCR_G_C2.380 Ncr_G_C2.380 32 3.7
NCR_G_C2.273 Ncr_G_C2.273 32 3.7
NCR_G_C2.185 Ncr_G_C2.185 32 3.7
NCR_G_C2.148 Ncr_G_C2.148 32 3.7
NCR_G_C2.130 Ncr_G_C2.130 32 3.7
NCR_G_C2.033 Ncr_G_C2.033 32 3.7
NCR_G_C2.022_3 Ncr_G_C2.022_3.seq Continuation (3 of 6) of Ncr_G... 32 3.7
NCR_G_C2.022_2 Ncr_G_C2.022_2.seq Continuation (2 of 6) of Ncr_G... 32 3.7
>NCR_G_C2.026 Ncr_G_C2.026
Length = 16958
Score = 141 bits (71), Expect = 6e-33
Identities = 125/143 (87%)
Strand = Plus / Minus
Query: 217 ggccacgtcgatcagcccaccgaggcccacggccggggcacctttgattgtcatatgatg 276
|||||||| || |||| ||||||||| ||||| ||||||||| || || || ||||||
Sbjct: 16847 ggccacgttgagaagccaaccgaggcctacggcaagggcaccttcgactgccacatgatg 16788
Query: 277 attgcagagcccaagaaatgggtcaaggagttcaagaaggctggctgcaacctttactgc 336
||||| ||||||||||||||||||||||||||||||||||| || ||| | || ||||||
Sbjct: 16787 attgccgagcccaagaaatgggtcaaggagttcaagaaggccggttgcgatctgtactgc 16728
Query: 337 ttccactatgaggctgccttctc 359
|||||||||||||| ||||||||
Sbjct: 16727 ttccactatgaggccgccttctc 16705
>NCR_G_C2.027 Ncr_G_C2.027
Length = 84885
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 127 cagggcgcggactggctccatgtcga 152
|||||||| |||||||||||||||||
Sbjct: 72 cagggcgccgactggctccatgtcga 47
>NCR_G_C2.042_6 Ncr_G_C2.042_6.seq Continuation (6 of 6) of
Ncr_G_C2.042 from base 500001
Length = 22496
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 390 cgacgaaaagaccaaccccaa 410
|||||||||||||||||||||
Sbjct: 7595 cgacgaaaagaccaaccccaa 7575
>NCR_G_C2.042_5 Ncr_G_C2.042_5.seq Continuation (5 of 6) of Ncr_G_C2.042
from base 400001
Length = 110000
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 390 cgacgaaaagaccaaccccaa 410
|||||||||||||||||||||
Sbjct: 107595 cgacgaaaagaccaaccccaa 107575
>NCR_G_C2.038 Ncr_G_C2.038
Length = 68631
Score = 36.2 bits (18), Expect = 0.24
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 289 aagaaatgggtcaaggag 306
||||||||||||||||||
Sbjct: 34514 aagaaatgggtcaaggag 34497
>NCR_G_C2.255 Ncr_G_C2.255
Length = 59092
Score = 34.2 bits (17), Expect = 0.93
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 96 gcttggccatgactgtg 112
|||||||||||||||||
Sbjct: 4440 gcttggccatgactgtg 4424
>NCR_G_C2.217 Ncr_G_C2.217
Length = 51556
Score = 34.2 bits (17), Expect = 0.93
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 298 gtcaaggagttcaagaaggct 318
||||||||| |||||||||||
Sbjct: 20699 gtcaaggagctcaagaaggct 20719
>NCR_G_C2.850 Ncr_G_C2.850
Length = 26337
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 291 gaaatgggtcaaggag 306
||||||||||||||||
Sbjct: 24651 gaaatgggtcaaggag 24666
>NCR_G_C2.687 Ncr_G_C2.687
Length = 148317
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 302 aggagttcaagaaggc 317
||||||||||||||||
Sbjct: 128099 aggagttcaagaaggc 128084
>NCR_G_C2.437 Ncr_G_C2.437
Length = 118197
Score = 32.2 bits (16), Expect = 3.7
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 174 ccccaacatcaccttcggtc 193
|||||||| |||||||||||
Sbjct: 115507 ccccaacaccaccttcggtc 115526
>NCR_G_C2.380 Ncr_G_C2.380
Length = 179343
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 438 aggcttgttggctggt 453
||||||||||||||||
Sbjct: 105830 aggcttgttggctggt 105845
>NCR_G_C2.273 Ncr_G_C2.273
Length = 82197
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 442 ttgttggctggtattg 457
||||||||||||||||
Sbjct: 12048 ttgttggctggtattg 12063
>NCR_G_C2.185 Ncr_G_C2.185
Length = 128626
Score = 32.2 bits (16), Expect = 3.7
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 302 aggagttcaagaaggctggc 321
|||||||| |||||||||||
Sbjct: 84425 aggagttcgagaaggctggc 84406
>NCR_G_C2.148 Ncr_G_C2.148
Length = 98105
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 194 ctcccgtagttgctgc 209
||||||||||||||||
Sbjct: 4919 ctcccgtagttgctgc 4934
>NCR_G_C2.130 Ncr_G_C2.130
Length = 35253
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 421 cgatatatccacgacc 436
||||||||||||||||
Sbjct: 27223 cgatatatccacgacc 27238
>NCR_G_C2.033 Ncr_G_C2.033
Length = 166617
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 291 gaaatgggtcaaggag 306
||||||||||||||||
Sbjct: 21010 gaaatgggtcaaggag 20995
>NCR_G_C2.022_3 Ncr_G_C2.022_3.seq Continuation (3 of 6) of
Ncr_G_C2.022 from base 200001
Length = 110000
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 215 gaggccacgtcgatca 230
||||||||||||||||
Sbjct: 9054 gaggccacgtcgatca 9069
>NCR_G_C2.022_2 Ncr_G_C2.022_2.seq Continuation (2 of 6) of Ncr_G_C2.022
from base 100001
Length = 110000
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 215 gaggccacgtcgatca 230
||||||||||||||||
Sbjct: 109054 gaggccacgtcgatca 109069
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9185
Number of Sequences: 995
Number of extensions: 9185
Number of successful extensions: 20
Number of sequences better than 10.0: 18
length of query: 500
length of database: 37,969,317
effective HSP length: 17
effective length of query: 483
effective length of database: 37,952,402
effective search space: 18331010166
effective search space used: 18331010166
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)