BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1609_F09_K1
7ZT.seq
(502 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.403 Ncr_G_C2.403 34 0.94
NCR_G_C2.224 Ncr_G_C2.224 34 0.94
NCR_G_C2.148 Ncr_G_C2.148 34 0.94
NCR_G_C2.095 Ncr_G_C2.095 34 0.94
NCR_G_C2.825 Ncr_G_C2.825 32 3.7
NCR_G_C2.684 Ncr_G_C2.684 32 3.7
NCR_G_C2.416 Ncr_G_C2.416 32 3.7
NCR_G_C2.331 Ncr_G_C2.331 32 3.7
NCR_G_C2.115 Ncr_G_C2.115 32 3.7
NCR_G_C2.022_1 Ncr_G_C2.022_1.seq Continuation (1 of 6) of Ncr_G... 32 3.7
>NCR_G_C2.403 Ncr_G_C2.403
Length = 165442
Score = 34.2 bits (17), Expect = 0.94
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 285 taggcaggttgttgtga 301
|||||||||||||||||
Sbjct: 99700 taggcaggttgttgtga 99716
>NCR_G_C2.224 Ncr_G_C2.224
Length = 69257
Score = 34.2 bits (17), Expect = 0.94
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 31 aacaagccggcatgact 47
|||||||||||||||||
Sbjct: 40424 aacaagccggcatgact 40440
>NCR_G_C2.148 Ncr_G_C2.148
Length = 98105
Score = 34.2 bits (17), Expect = 0.94
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 287 ggcaggttgttgtgacttgca 307
||||||| |||||||||||||
Sbjct: 82107 ggcaggtggttgtgacttgca 82127
>NCR_G_C2.095 Ncr_G_C2.095
Length = 82161
Score = 34.2 bits (17), Expect = 0.94
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 231 tgtcagtcatcgaccaa 247
|||||||||||||||||
Sbjct: 58509 tgtcagtcatcgaccaa 58525
>NCR_G_C2.825 Ncr_G_C2.825
Length = 52585
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 388 cccctcacaatctatc 403
||||||||||||||||
Sbjct: 28845 cccctcacaatctatc 28830
>NCR_G_C2.684 Ncr_G_C2.684
Length = 86140
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 426 gatacctatttctggg 441
||||||||||||||||
Sbjct: 70160 gatacctatttctggg 70175
>NCR_G_C2.416 Ncr_G_C2.416
Length = 188447
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 16 gtggacaatggtcgca 31
||||||||||||||||
Sbjct: 107888 gtggacaatggtcgca 107903
>NCR_G_C2.331 Ncr_G_C2.331
Length = 34803
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 118 ggatgtctgctcatgg 133
||||||||||||||||
Sbjct: 18669 ggatgtctgctcatgg 18654
>NCR_G_C2.115 Ncr_G_C2.115
Length = 55252
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 260 gtgacttggacttggc 275
||||||||||||||||
Sbjct: 52977 gtgacttggacttggc 52962
>NCR_G_C2.022_1 Ncr_G_C2.022_1.seq Continuation (1 of 6) of Ncr_G_C2.022
from base 1
Length = 110000
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 364 taaaccagcattttca 379
||||||||||||||||
Sbjct: 10391 taaaccagcattttca 10406
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7467
Number of Sequences: 995
Number of extensions: 7467
Number of successful extensions: 10
Number of sequences better than 10.0: 10
length of query: 502
length of database: 37,969,317
effective HSP length: 17
effective length of query: 485
effective length of database: 37,952,402
effective search space: 18406914970
effective search space used: 18406914970
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)