BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1609_H02_O0
3ZT.seq
(461 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.208 Ncr_G_C2.208 34 0.86
NCR_G_C2.032 Ncr_G_C2.032 34 0.86
NCR_G_C2.511 Ncr_G_C2.511 32 3.4
NCR_G_C2.328 Ncr_G_C2.328 32 3.4
NCR_G_C2.230 Ncr_G_C2.230 32 3.4
NCR_G_C2.216 Ncr_G_C2.216 32 3.4
NCR_G_C2.112 Ncr_G_C2.112 32 3.4
NCR_G_C2.083 Ncr_G_C2.083 32 3.4
>NCR_G_C2.208 Ncr_G_C2.208
Length = 202230
Score = 34.2 bits (17), Expect = 0.86
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 153 gagaccttcatttgttc 169
|||||||||||||||||
Sbjct: 5388 gagaccttcatttgttc 5404
>NCR_G_C2.032 Ncr_G_C2.032
Length = 80998
Score = 34.2 bits (17), Expect = 0.86
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 245 agatgcatctccaaggt 261
|||||||||||||||||
Sbjct: 15873 agatgcatctccaaggt 15857
>NCR_G_C2.511 Ncr_G_C2.511
Length = 62614
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 352 acccaggaccgatggt 367
||||||||||||||||
Sbjct: 48331 acccaggaccgatggt 48346
>NCR_G_C2.328 Ncr_G_C2.328
Length = 28615
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 19 cctttgcgattgctgc 34
||||||||||||||||
Sbjct: 25749 cctttgcgattgctgc 25764
>NCR_G_C2.230 Ncr_G_C2.230
Length = 223934
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 168 tcaacgagactctcta 183
||||||||||||||||
Sbjct: 162826 tcaacgagactctcta 162841
>NCR_G_C2.216 Ncr_G_C2.216
Length = 48088
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 261 ttgactttacccagcg 276
||||||||||||||||
Sbjct: 40034 ttgactttacccagcg 40019
>NCR_G_C2.112 Ncr_G_C2.112
Length = 81259
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 120 ccgccgacgagaaggg 135
||||||||||||||||
Sbjct: 19801 ccgccgacgagaaggg 19786
>NCR_G_C2.083 Ncr_G_C2.083
Length = 123429
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 121 cgccgacgagaagggc 136
||||||||||||||||
Sbjct: 87806 cgccgacgagaagggc 87821
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8150
Number of Sequences: 995
Number of extensions: 8150
Number of successful extensions: 8
Number of sequences better than 10.0: 8
length of query: 461
length of database: 37,969,317
effective HSP length: 17
effective length of query: 444
effective length of database: 37,952,402
effective search space: 16850866488
effective search space used: 16850866488
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)