BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1609_H03_O0
5ZT.seq
(499 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.672 Ncr_G_C2.672 34 0.93
NCR_G_C2.596 Ncr_G_C2.596 34 0.93
NCR_G_C2.057 Ncr_G_C2.057 34 0.93
NCR_G_C2.738 Ncr_G_C2.738 32 3.7
NCR_G_C2.614 Ncr_G_C2.614 32 3.7
NCR_G_C2.483 Ncr_G_C2.483 32 3.7
NCR_G_C2.380 Ncr_G_C2.380 32 3.7
NCR_G_C2.329 Ncr_G_C2.329 32 3.7
NCR_G_C2.301 Ncr_G_C2.301 32 3.7
NCR_G_C2.205 Ncr_G_C2.205 32 3.7
NCR_G_C2.202 Ncr_G_C2.202 32 3.7
NCR_G_C2.148 Ncr_G_C2.148 32 3.7
NCR_G_C2.103 Ncr_G_C2.103 32 3.7
NCR_G_C2.100 Ncr_G_C2.100 32 3.7
NCR_G_C2.022_5 Ncr_G_C2.022_5.seq Continuation (5 of 6) of Ncr_G... 32 3.7
>NCR_G_C2.672 Ncr_G_C2.672
Length = 83703
Score = 34.2 bits (17), Expect = 0.93
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 35 gcagctgtctggaactg 51
|||||||||||||||||
Sbjct: 44474 gcagctgtctggaactg 44458
>NCR_G_C2.596 Ncr_G_C2.596
Length = 84018
Score = 34.2 bits (17), Expect = 0.93
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 130 gagggtcgtctgctcga 146
|||||||||||||||||
Sbjct: 29492 gagggtcgtctgctcga 29476
>NCR_G_C2.057 Ncr_G_C2.057
Length = 66877
Score = 34.2 bits (17), Expect = 0.93
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 159 tggcactgcctacttca 175
|||||||||||||||||
Sbjct: 58674 tggcactgcctacttca 58658
>NCR_G_C2.738 Ncr_G_C2.738
Length = 5465
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 261 caaggtcaagggctgg 276
||||||||||||||||
Sbjct: 425 caaggtcaagggctgg 440
>NCR_G_C2.614 Ncr_G_C2.614
Length = 9978
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 421 attggttattaaagac 436
||||||||||||||||
Sbjct: 1645 attggttattaaagac 1630
>NCR_G_C2.483 Ncr_G_C2.483
Length = 63015
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 363 atgcaccaaaagttga 378
||||||||||||||||
Sbjct: 10000 atgcaccaaaagttga 10015
>NCR_G_C2.380 Ncr_G_C2.380
Length = 179343
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 413 agagaccgattggtta 428
||||||||||||||||
Sbjct: 150359 agagaccgattggtta 150344
>NCR_G_C2.329 Ncr_G_C2.329
Length = 53959
Score = 32.2 bits (16), Expect = 3.7
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 229 ggcgccgagggcgaggccgg 248
|||||||||||||| |||||
Sbjct: 12608 ggcgccgagggcgatgccgg 12589
>NCR_G_C2.301 Ncr_G_C2.301
Length = 71471
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 207 aaaggacatcaacatc 222
||||||||||||||||
Sbjct: 34837 aaaggacatcaacatc 34852
>NCR_G_C2.205 Ncr_G_C2.205
Length = 197179
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 278 tgggcgacatcatgta 293
||||||||||||||||
Sbjct: 148763 tgggcgacatcatgta 148748
>NCR_G_C2.202 Ncr_G_C2.202
Length = 148112
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 238 ggcgaggccggtgagg 253
||||||||||||||||
Sbjct: 138717 ggcgaggccggtgagg 138732
>NCR_G_C2.148 Ncr_G_C2.148
Length = 98105
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 468 cagatagttaatgaga 483
||||||||||||||||
Sbjct: 96280 cagatagttaatgaga 96265
>NCR_G_C2.103 Ncr_G_C2.103
Length = 50668
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 17 ttgatggtgttacccg 32
||||||||||||||||
Sbjct: 44070 ttgatggtgttacccg 44085
>NCR_G_C2.100 Ncr_G_C2.100
Length = 40170
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 229 ggcgccgagggcgagg 244
||||||||||||||||
Sbjct: 33885 ggcgccgagggcgagg 33870
>NCR_G_C2.022_5 Ncr_G_C2.022_5.seq Continuation (5 of 6) of Ncr_G_C2.022
from base 400001
Length = 110000
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 321 tgtcatccccgagaag 336
||||||||||||||||
Sbjct: 10949 tgtcatccccgagaag 10964
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9511
Number of Sequences: 995
Number of extensions: 9511
Number of successful extensions: 15
Number of sequences better than 10.0: 15
length of query: 499
length of database: 37,969,317
effective HSP length: 17
effective length of query: 482
effective length of database: 37,952,402
effective search space: 18293057764
effective search space used: 18293057764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)