BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1610_A01_A0
2ZT.seq
(609 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.458 Ncr_G_C2.458 36 0.29
NCR_G_C2.736 Ncr_G_C2.736 34 1.1
NCR_G_C2.629 Ncr_G_C2.629 34 1.1
NCR_G_C2.351 Ncr_G_C2.351 34 1.1
NCR_G_C2.203 Ncr_G_C2.203 34 1.1
NCR_G_C2.138 Ncr_G_C2.138 34 1.1
NCR_G_C2.132 Ncr_G_C2.132 34 1.1
NCR_G_C2.756 Ncr_G_C2.756 32 4.5
NCR_G_C2.690 Ncr_G_C2.690 32 4.5
NCR_G_C2.661 Ncr_G_C2.661 32 4.5
NCR_G_C2.596 Ncr_G_C2.596 32 4.5
NCR_G_C2.585 Ncr_G_C2.585 32 4.5
NCR_G_C2.452 Ncr_G_C2.452 32 4.5
NCR_G_C2.407 Ncr_G_C2.407 32 4.5
NCR_G_C2.404 Ncr_G_C2.404 32 4.5
NCR_G_C2.393 Ncr_G_C2.393 32 4.5
NCR_G_C2.379 Ncr_G_C2.379 32 4.5
NCR_G_C2.358 Ncr_G_C2.358 32 4.5
NCR_G_C2.247 Ncr_G_C2.247 32 4.5
NCR_G_C2.219 Ncr_G_C2.219 32 4.5
NCR_G_C2.116 Ncr_G_C2.116 32 4.5
NCR_G_C2.110 Ncr_G_C2.110 32 4.5
NCR_G_C2.101 Ncr_G_C2.101 32 4.5
NCR_G_C2.095 Ncr_G_C2.095 32 4.5
NCR_G_C2.022_4 Ncr_G_C2.022_4.seq Continuation (4 of 6) of Ncr_G... 32 4.5
NCR_G_C2.021 Ncr_G_C2.021 32 4.5
>NCR_G_C2.458 Ncr_G_C2.458
Length = 32375
Score = 36.2 bits (18), Expect = 0.29
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 92 acagcaaggtcatcgccg 109
||||||||||||||||||
Sbjct: 18679 acagcaaggtcatcgccg 18696
>NCR_G_C2.736 Ncr_G_C2.736
Length = 110835
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 464 agaagggtcttggccat 480
|||||||||||||||||
Sbjct: 103607 agaagggtcttggccat 103623
>NCR_G_C2.629 Ncr_G_C2.629
Length = 73227
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 522 gggcgttggtgttgatg 538
|||||||||||||||||
Sbjct: 48355 gggcgttggtgttgatg 48339
>NCR_G_C2.351 Ncr_G_C2.351
Length = 5761
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 459 caagaagaagggtcttg 475
|||||||||||||||||
Sbjct: 1274 caagaagaagggtcttg 1290
>NCR_G_C2.203 Ncr_G_C2.203
Length = 128723
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 590 ttggcttcaacgatgcc 606
|||||||||||||||||
Sbjct: 102020 ttggcttcaacgatgcc 102004
>NCR_G_C2.138 Ncr_G_C2.138
Length = 46995
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 155 ttctcgtccctcctccc 171
|||||||||||||||||
Sbjct: 9356 ttctcgtccctcctccc 9372
Score = 32.2 bits (16), Expect = 4.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 336 cgcctttctcttcaac 351
||||||||||||||||
Sbjct: 33783 cgcctttctcttcaac 33768
>NCR_G_C2.132 Ncr_G_C2.132
Length = 33196
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 523 ggcgttggtgttgatgt 539
|||||||||||||||||
Sbjct: 19906 ggcgttggtgttgatgt 19922
>NCR_G_C2.756 Ncr_G_C2.756
Length = 88549
Score = 32.2 bits (16), Expect = 4.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 375 ccgcgcgctgctcaag 390
||||||||||||||||
Sbjct: 28355 ccgcgcgctgctcaag 28370
Score = 32.2 bits (16), Expect = 4.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 386 tcaagtaccagatcgt 401
||||||||||||||||
Sbjct: 38893 tcaagtaccagatcgt 38878
>NCR_G_C2.690 Ncr_G_C2.690
Length = 112273
Score = 32.2 bits (16), Expect = 4.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 440 gcgacgagaagcagac 455
||||||||||||||||
Sbjct: 33536 gcgacgagaagcagac 33521
>NCR_G_C2.661 Ncr_G_C2.661
Length = 81294
Score = 32.2 bits (16), Expect = 4.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 39 gccccagcgtctccga 54
||||||||||||||||
Sbjct: 63107 gccccagcgtctccga 63092
>NCR_G_C2.596 Ncr_G_C2.596
Length = 84018
Score = 32.2 bits (16), Expect = 4.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 157 ctcgtccctcctccct 172
||||||||||||||||
Sbjct: 4709 ctcgtccctcctccct 4724
>NCR_G_C2.585 Ncr_G_C2.585
Length = 245975
Score = 32.2 bits (16), Expect = 4.5
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 520 aggggcgttggtgttgatgt 539
|||| |||||||||||||||
Sbjct: 197761 agggccgttggtgttgatgt 197742
>NCR_G_C2.452 Ncr_G_C2.452
Length = 120796
Score = 32.2 bits (16), Expect = 4.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 349 aacaccgagaccggca 364
||||||||||||||||
Sbjct: 109522 aacaccgagaccggca 109507
>NCR_G_C2.407 Ncr_G_C2.407
Length = 67558
Score = 32.2 bits (16), Expect = 4.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 354 cgagaccggcaagaag 369
||||||||||||||||
Sbjct: 17051 cgagaccggcaagaag 17066
>NCR_G_C2.404 Ncr_G_C2.404
Length = 264766
Score = 32.2 bits (16), Expect = 4.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 339 ctttctcttcaacacc 354
||||||||||||||||
Sbjct: 2150 ctttctcttcaacacc 2165
>NCR_G_C2.393 Ncr_G_C2.393
Length = 64366
Score = 32.2 bits (16), Expect = 4.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 48 tctccgaacaagtgtt 63
||||||||||||||||
Sbjct: 12678 tctccgaacaagtgtt 12663
>NCR_G_C2.379 Ncr_G_C2.379
Length = 245776
Score = 32.2 bits (16), Expect = 4.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 187 atcagccttttccccg 202
||||||||||||||||
Sbjct: 156108 atcagccttttccccg 156093
>NCR_G_C2.358 Ncr_G_C2.358
Length = 98362
Score = 32.2 bits (16), Expect = 4.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 124 aagaatggcatcatcc 139
||||||||||||||||
Sbjct: 75031 aagaatggcatcatcc 75016
>NCR_G_C2.247 Ncr_G_C2.247
Length = 65635
Score = 32.2 bits (16), Expect = 4.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 54 aacaagtgttggattt 69
||||||||||||||||
Sbjct: 36460 aacaagtgttggattt 36475
>NCR_G_C2.219 Ncr_G_C2.219
Length = 282514
Score = 32.2 bits (16), Expect = 4.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 459 caagaagaagggtctt 474
||||||||||||||||
Sbjct: 88329 caagaagaagggtctt 88314
>NCR_G_C2.116 Ncr_G_C2.116
Length = 72284
Score = 32.2 bits (16), Expect = 4.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 199 cccgcccaattctcaa 214
||||||||||||||||
Sbjct: 16709 cccgcccaattctcaa 16694
>NCR_G_C2.110 Ncr_G_C2.110
Length = 102633
Score = 32.2 bits (16), Expect = 4.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 444 cgagaagcagactctc 459
||||||||||||||||
Sbjct: 26788 cgagaagcagactctc 26803
>NCR_G_C2.101 Ncr_G_C2.101
Length = 209184
Score = 32.2 bits (16), Expect = 4.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 588 tattggcttcaacgat 603
||||||||||||||||
Sbjct: 202512 tattggcttcaacgat 202497
>NCR_G_C2.095 Ncr_G_C2.095
Length = 82161
Score = 32.2 bits (16), Expect = 4.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 205 caattctcaacactgc 220
||||||||||||||||
Sbjct: 8331 caattctcaacactgc 8316
>NCR_G_C2.022_4 Ncr_G_C2.022_4.seq Continuation (4 of 6) of Ncr_G_C2.022
from base 300001
Length = 110000
Score = 32.2 bits (16), Expect = 4.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 348 caacaccgagaccggc 363
||||||||||||||||
Sbjct: 56734 caacaccgagaccggc 56749
>NCR_G_C2.021 Ncr_G_C2.021
Length = 86769
Score = 32.2 bits (16), Expect = 4.5
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 372 cctccgcgcgctgctcaagt 391
|||||| |||||||||||||
Sbjct: 30432 cctccgggcgctgctcaagt 30413
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12873
Number of Sequences: 995
Number of extensions: 12873
Number of successful extensions: 28
Number of sequences better than 10.0: 26
length of query: 609
length of database: 37,969,317
effective HSP length: 17
effective length of query: 592
effective length of database: 37,952,402
effective search space: 22467821984
effective search space used: 22467821984
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)