BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1610_B01_C0
2ZT.seq
(434 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.255 Ncr_G_C2.255 78 6e-14
NCR_G_C2.066 Ncr_G_C2.066 36 0.20
NCR_G_C2.186 Ncr_G_C2.186 34 0.81
NCR_G_C2.022_4 Ncr_G_C2.022_4.seq Continuation (4 of 6) of Ncr_G... 34 0.81
NCR_G_C2.574 Ncr_G_C2.574 32 3.2
NCR_G_C2.380 Ncr_G_C2.380 32 3.2
NCR_G_C2.357 Ncr_G_C2.357 32 3.2
NCR_G_C2.154 Ncr_G_C2.154 32 3.2
NCR_G_C2.099 Ncr_G_C2.099 32 3.2
NCR_G_C2.083 Ncr_G_C2.083 32 3.2
NCR_G_C2.022_3 Ncr_G_C2.022_3.seq Continuation (3 of 6) of Ncr_G... 32 3.2
NCR_G_C2.022_2 Ncr_G_C2.022_2.seq Continuation (2 of 6) of Ncr_G... 32 3.2
>NCR_G_C2.255 Ncr_G_C2.255
Length = 59092
Score = 77.8 bits (39), Expect = 6e-14
Identities = 129/159 (81%)
Strand = Plus / Minus
Query: 29 tacttcatgcacgaccgtgccgtgcgcgagtcaggtcacgatacctcataccgcctcgaa 88
||||||||||||||| | || || || ||||| || ||||||||| |||||||| |||||
Sbjct: 38512 tacttcatgcacgacagagctgttcgtgagtccggccacgataccacataccgcttcgaa 38453
Query: 89 ggagtctgtgccaacctagccaccattgatctcaacagtctcctgttcaaatatgagact 148
|| |||| || | || |||||||| |||||||| ||||||||||| ||||||||
Sbjct: 38452 ggtatctgcgctgatctggccaccatcgatctcaattcgctcctgttcaagtatgagacc 38393
Query: 149 gatattgcccgaactatccgcagcgtcttcaacgacaag 187
|| ||||| || || || |||| ||||||| ||||||||
Sbjct: 38392 gacattgcgcgtacaattcgcaacgtcttccacgacaag 38354
>NCR_G_C2.066 Ncr_G_C2.066
Length = 117949
Score = 36.2 bits (18), Expect = 0.20
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 141 atgagactgatattgcccgaac 162
|||| |||||||||||||||||
Sbjct: 58445 atgaaactgatattgcccgaac 58424
>NCR_G_C2.186 Ncr_G_C2.186
Length = 67459
Score = 34.2 bits (17), Expect = 0.81
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 304 gtgggatgagaaggagggcat 324
||||| |||||||||||||||
Sbjct: 25778 gtgggctgagaaggagggcat 25798
>NCR_G_C2.022_4 Ncr_G_C2.022_4.seq Continuation (4 of 6) of Ncr_G_C2.022
from base 300001
Length = 110000
Score = 34.2 bits (17), Expect = 0.81
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 225 accagcctggtgaggtc 241
|||||||||||||||||
Sbjct: 14800 accagcctggtgaggtc 14816
>NCR_G_C2.574 Ncr_G_C2.574
Length = 180542
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 314 aaggagggcatgttct 329
||||||||||||||||
Sbjct: 94953 aaggagggcatgttct 94938
>NCR_G_C2.380 Ncr_G_C2.380
Length = 179343
Score = 32.2 bits (16), Expect = 3.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 339 acaccgcgaagcgcgagcga 358
||||||||||||||| ||||
Sbjct: 85512 acaccgcgaagcgcgcgcga 85493
>NCR_G_C2.357 Ncr_G_C2.357
Length = 48218
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 415 aaagcaggcagctgag 430
||||||||||||||||
Sbjct: 40922 aaagcaggcagctgag 40907
>NCR_G_C2.154 Ncr_G_C2.154
Length = 23906
Score = 32.2 bits (16), Expect = 3.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 360 gtacatacgaaagctgcaca 379
|||||||||||||| |||||
Sbjct: 13769 gtacatacgaaagcggcaca 13750
>NCR_G_C2.099 Ncr_G_C2.099
Length = 83630
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 163 tatccgcagcgtcttc 178
||||||||||||||||
Sbjct: 5203 tatccgcagcgtcttc 5218
>NCR_G_C2.083 Ncr_G_C2.083
Length = 123429
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 5 atcgaagagcctgaac 20
||||||||||||||||
Sbjct: 5064 atcgaagagcctgaac 5079
>NCR_G_C2.022_3 Ncr_G_C2.022_3.seq Continuation (3 of 6) of
Ncr_G_C2.022 from base 200001
Length = 110000
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 169 cagcgtcttcaacgac 184
||||||||||||||||
Sbjct: 8624 cagcgtcttcaacgac 8639
>NCR_G_C2.022_2 Ncr_G_C2.022_2.seq Continuation (2 of 6) of Ncr_G_C2.022
from base 100001
Length = 110000
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 169 cagcgtcttcaacgac 184
||||||||||||||||
Sbjct: 108624 cagcgtcttcaacgac 108639
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7240
Number of Sequences: 995
Number of extensions: 7240
Number of successful extensions: 13
Number of sequences better than 10.0: 12
length of query: 434
length of database: 37,969,317
effective HSP length: 17
effective length of query: 417
effective length of database: 37,952,402
effective search space: 15826151634
effective search space used: 15826151634
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)