BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1610_B07_C1
4ZT.seq
(326 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.718 Ncr_G_C2.718 32 2.4
NCR_G_C2.712 Ncr_G_C2.712 32 2.4
NCR_G_C2.643 Ncr_G_C2.643 32 2.4
NCR_G_C2.448 Ncr_G_C2.448 32 2.4
NCR_G_C2.162 Ncr_G_C2.162 32 2.4
NCR_G_C2.027 Ncr_G_C2.027 32 2.4
NCR_G_C2.668 Ncr_G_C2.668 30 9.4
NCR_G_C2.650 Ncr_G_C2.650 30 9.4
NCR_G_C2.646 Ncr_G_C2.646 30 9.4
NCR_G_C2.546 Ncr_G_C2.546 30 9.4
NCR_G_C2.423 Ncr_G_C2.423 30 9.4
NCR_G_C2.394 Ncr_G_C2.394 30 9.4
NCR_G_C2.380 Ncr_G_C2.380 30 9.4
NCR_G_C2.327 Ncr_G_C2.327 30 9.4
NCR_G_C2.110 Ncr_G_C2.110 30 9.4
NCR_G_C2.095 Ncr_G_C2.095 30 9.4
NCR_G_C2.068 Ncr_G_C2.068 30 9.4
NCR_G_C2.043 Ncr_G_C2.043 30 9.4
>NCR_G_C2.718 Ncr_G_C2.718
Length = 48032
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 282 actgtgacaaagttgt 297
||||||||||||||||
Sbjct: 32091 actgtgacaaagttgt 32106
>NCR_G_C2.712 Ncr_G_C2.712
Length = 37287
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 275 tgatgagactgtgaca 290
||||||||||||||||
Sbjct: 18234 tgatgagactgtgaca 18219
>NCR_G_C2.643 Ncr_G_C2.643
Length = 36074
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 156 cagggcattgcagcgc 171
||||||||||||||||
Sbjct: 32092 cagggcattgcagcgc 32077
>NCR_G_C2.448 Ncr_G_C2.448
Length = 102021
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 243 tttgcctgggctctgg 258
||||||||||||||||
Sbjct: 50431 tttgcctgggctctgg 50416
>NCR_G_C2.162 Ncr_G_C2.162
Length = 33378
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 264 gaggctggtgctgatg 279
||||||||||||||||
Sbjct: 29773 gaggctggtgctgatg 29758
>NCR_G_C2.027 Ncr_G_C2.027
Length = 84885
Score = 32.2 bits (16), Expect = 2.4
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 153 tgccagggcattgcagcgcg 172
|||||||||||||| |||||
Sbjct: 20152 tgccagggcattgcggcgcg 20171
>NCR_G_C2.668 Ncr_G_C2.668
Length = 78107
Score = 30.2 bits (15), Expect = 9.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 264 gaggctggtgctgatgaga 282
|||||||||||||| ||||
Sbjct: 65521 gaggctggtgctgaggaga 65539
>NCR_G_C2.650 Ncr_G_C2.650
Length = 26130
Score = 30.2 bits (15), Expect = 9.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 290 aaagttgtaaggtgtttat 308
||||||||||||| |||||
Sbjct: 7219 aaagttgtaaggtctttat 7201
>NCR_G_C2.646 Ncr_G_C2.646
Length = 41756
Score = 30.2 bits (15), Expect = 9.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 223 cgaggggattgttgg 237
|||||||||||||||
Sbjct: 22743 cgaggggattgttgg 22729
>NCR_G_C2.546 Ncr_G_C2.546
Length = 112644
Score = 30.2 bits (15), Expect = 9.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 153 tgccagggcattgca 167
|||||||||||||||
Sbjct: 27225 tgccagggcattgca 27211
>NCR_G_C2.423 Ncr_G_C2.423
Length = 97362
Score = 30.2 bits (15), Expect = 9.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 200 aaaggcgagacagca 214
|||||||||||||||
Sbjct: 52757 aaaggcgagacagca 52771
>NCR_G_C2.394 Ncr_G_C2.394
Length = 74819
Score = 30.2 bits (15), Expect = 9.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 268 ctggtgctgatgaga 282
|||||||||||||||
Sbjct: 65644 ctggtgctgatgaga 65630
>NCR_G_C2.380 Ncr_G_C2.380
Length = 179343
Score = 30.2 bits (15), Expect = 9.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 133 tctggaagctggcgg 147
|||||||||||||||
Sbjct: 119972 tctggaagctggcgg 119986
>NCR_G_C2.327 Ncr_G_C2.327
Length = 167595
Score = 30.2 bits (15), Expect = 9.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 233 gttggctgagtttgc 247
|||||||||||||||
Sbjct: 108506 gttggctgagtttgc 108492
>NCR_G_C2.110 Ncr_G_C2.110
Length = 102633
Score = 30.2 bits (15), Expect = 9.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 287 gacaaagttgtaagg 301
|||||||||||||||
Sbjct: 26818 gacaaagttgtaagg 26804
>NCR_G_C2.095 Ncr_G_C2.095
Length = 82161
Score = 30.2 bits (15), Expect = 9.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 263 agaggctggtgctga 277
|||||||||||||||
Sbjct: 17857 agaggctggtgctga 17843
>NCR_G_C2.068 Ncr_G_C2.068
Length = 163893
Score = 30.2 bits (15), Expect = 9.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 35 ggacggtcttccaca 49
|||||||||||||||
Sbjct: 156024 ggacggtcttccaca 156038
>NCR_G_C2.043 Ncr_G_C2.043
Length = 199771
Score = 30.2 bits (15), Expect = 9.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 54 gagaagatcctggag 68
|||||||||||||||
Sbjct: 3562 gagaagatcctggag 3548
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5114
Number of Sequences: 995
Number of extensions: 5114
Number of successful extensions: 18
Number of sequences better than 10.0: 18
length of query: 326
length of database: 37,969,317
effective HSP length: 16
effective length of query: 310
effective length of database: 37,953,397
effective search space: 11765553070
effective search space used: 11765553070
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)