BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1610_D07_G1
4ZT.seq
(444 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.223 Ncr_G_C2.223 36 0.21
NCR_G_C2.773 Ncr_G_C2.773 34 0.83
NCR_G_C2.794 Ncr_G_C2.794 32 3.3
NCR_G_C2.736 Ncr_G_C2.736 32 3.3
NCR_G_C2.718 Ncr_G_C2.718 32 3.3
NCR_G_C2.568 Ncr_G_C2.568 32 3.3
NCR_G_C2.509 Ncr_G_C2.509 32 3.3
NCR_G_C2.497 Ncr_G_C2.497 32 3.3
NCR_G_C2.403 Ncr_G_C2.403 32 3.3
NCR_G_C2.265 Ncr_G_C2.265 32 3.3
NCR_G_C2.196 Ncr_G_C2.196 32 3.3
NCR_G_C2.172 Ncr_G_C2.172 32 3.3
NCR_G_C2.126 Ncr_G_C2.126 32 3.3
NCR_G_C2.111 Ncr_G_C2.111 32 3.3
NCR_G_C2.077 Ncr_G_C2.077 32 3.3
NCR_G_C2.044 Ncr_G_C2.044 32 3.3
NCR_G_C2.042_3 Ncr_G_C2.042_3.seq Continuation (3 of 6) of Ncr_G... 32 3.3
NCR_G_C2.025 Ncr_G_C2.025 32 3.3
>NCR_G_C2.223 Ncr_G_C2.223
Length = 42533
Score = 36.2 bits (18), Expect = 0.21
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 139 aagaagacgacaaagacg 156
||||||||||||||||||
Sbjct: 32131 aagaagacgacaaagacg 32114
>NCR_G_C2.773 Ncr_G_C2.773
Length = 40580
Score = 34.2 bits (17), Expect = 0.83
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 413 agaaacacgaagaggca 429
|||||||||||||||||
Sbjct: 27891 agaaacacgaagaggca 27907
>NCR_G_C2.794 Ncr_G_C2.794
Length = 8696
Score = 32.2 bits (16), Expect = 3.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 366 aaagaccaaagaaaag 381
||||||||||||||||
Sbjct: 80 aaagaccaaagaaaag 95
>NCR_G_C2.736 Ncr_G_C2.736
Length = 110835
Score = 32.2 bits (16), Expect = 3.3
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 79 attgtggaggatcttcttga 98
||||| ||||||||||||||
Sbjct: 5170 attgtcgaggatcttcttga 5151
>NCR_G_C2.718 Ncr_G_C2.718
Length = 48032
Score = 32.2 bits (16), Expect = 3.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 139 aagaagacgacaaaga 154
||||||||||||||||
Sbjct: 20332 aagaagacgacaaaga 20317
>NCR_G_C2.568 Ncr_G_C2.568
Length = 267169
Score = 32.2 bits (16), Expect = 3.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 356 aagctctatcaaagac 371
||||||||||||||||
Sbjct: 168926 aagctctatcaaagac 168941
>NCR_G_C2.509 Ncr_G_C2.509
Length = 86172
Score = 32.2 bits (16), Expect = 3.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 139 aagaagacgacaaaga 154
||||||||||||||||
Sbjct: 11116 aagaagacgacaaaga 11101
>NCR_G_C2.497 Ncr_G_C2.497
Length = 192966
Score = 32.2 bits (16), Expect = 3.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 197 cccagggcaatcagac 212
||||||||||||||||
Sbjct: 110503 cccagggcaatcagac 110518
>NCR_G_C2.403 Ncr_G_C2.403
Length = 165442
Score = 32.2 bits (16), Expect = 3.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 111 tccagaggagaaggag 126
||||||||||||||||
Sbjct: 38957 tccagaggagaaggag 38972
>NCR_G_C2.265 Ncr_G_C2.265
Length = 91342
Score = 32.2 bits (16), Expect = 3.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 229 tcgacaactatttctg 244
||||||||||||||||
Sbjct: 27653 tcgacaactatttctg 27668
>NCR_G_C2.196 Ncr_G_C2.196
Length = 18702
Score = 32.2 bits (16), Expect = 3.3
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 369 gaccaaagaaaagttgacta 388
|||||||||||| |||||||
Sbjct: 14422 gaccaaagaaaacttgacta 14441
>NCR_G_C2.172 Ncr_G_C2.172
Length = 97267
Score = 32.2 bits (16), Expect = 3.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 221 cccaaaattcgacaac 236
||||||||||||||||
Sbjct: 65747 cccaaaattcgacaac 65732
>NCR_G_C2.126 Ncr_G_C2.126
Length = 65036
Score = 32.2 bits (16), Expect = 3.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 57 cttggagctggagtgg 72
||||||||||||||||
Sbjct: 16839 cttggagctggagtgg 16854
>NCR_G_C2.111 Ncr_G_C2.111
Length = 322912
Score = 32.2 bits (16), Expect = 3.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 97 gatgaagatgaagctc 112
||||||||||||||||
Sbjct: 178043 gatgaagatgaagctc 178028
>NCR_G_C2.077 Ncr_G_C2.077
Length = 64403
Score = 32.2 bits (16), Expect = 3.3
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 82 gtggaggatcttcttgatga 101
|||||||||||| |||||||
Sbjct: 12970 gtggaggatcttgttgatga 12951
>NCR_G_C2.044 Ncr_G_C2.044
Length = 101344
Score = 32.2 bits (16), Expect = 3.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 266 tggacgagaagcttga 281
||||||||||||||||
Sbjct: 21489 tggacgagaagcttga 21474
>NCR_G_C2.042_3 Ncr_G_C2.042_3.seq Continuation (3 of 6) of Ncr_G_C2.042
from base 200001
Length = 110000
Score = 32.2 bits (16), Expect = 3.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 366 aaagaccaaagaaaag 381
||||||||||||||||
Sbjct: 47045 aaagaccaaagaaaag 47030
>NCR_G_C2.025 Ncr_G_C2.025
Length = 57588
Score = 32.2 bits (16), Expect = 3.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 62 agctggagtgggaaga 77
||||||||||||||||
Sbjct: 33775 agctggagtgggaaga 33760
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10472
Number of Sequences: 995
Number of extensions: 10472
Number of successful extensions: 18
Number of sequences better than 10.0: 18
length of query: 444
length of database: 37,969,317
effective HSP length: 17
effective length of query: 427
effective length of database: 37,952,402
effective search space: 16205675654
effective search space used: 16205675654
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)