BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1610_E04_I0
8ZT.seq
(421 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.256 Ncr_G_C2.256 38 0.050
NCR_G_C2.910 Ncr_G_C2.910 34 0.78
NCR_G_C2.065 Ncr_G_C2.065 34 0.78
NCR_G_C2.216 Ncr_G_C2.216 32 3.1
>NCR_G_C2.256 Ncr_G_C2.256
Length = 141304
Score = 38.2 bits (19), Expect = 0.050
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 243 tgggcgcttgcacgacgtg 261
|||||||||||||||||||
Sbjct: 26392 tgggcgcttgcacgacgtg 26374
>NCR_G_C2.910 Ncr_G_C2.910
Length = 17537
Score = 34.2 bits (17), Expect = 0.78
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 164 ctccttgcctccctgccatatgtct 188
||||||| ||| |||||||||||||
Sbjct: 13740 ctccttgactcgctgccatatgtct 13716
>NCR_G_C2.065 Ncr_G_C2.065
Length = 67958
Score = 34.2 bits (17), Expect = 0.78
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 290 tctctgacctttcagtt 306
|||||||||||||||||
Sbjct: 29073 tctctgacctttcagtt 29089
>NCR_G_C2.216 Ncr_G_C2.216
Length = 48088
Score = 32.2 bits (16), Expect = 3.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 200 ctaacatttcatccag 215
||||||||||||||||
Sbjct: 16915 ctaacatttcatccag 16900
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5998
Number of Sequences: 995
Number of extensions: 5998
Number of successful extensions: 4
Number of sequences better than 10.0: 4
length of query: 421
length of database: 37,969,317
effective HSP length: 17
effective length of query: 404
effective length of database: 37,952,402
effective search space: 15332770408
effective search space used: 15332770408
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)