BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1610_F08_K1
6ZT.seq
(312 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.053 Ncr_G_C2.053 54 6e-07
NCR_G_C2.344 Ncr_G_C2.344 38 0.037
NCR_G_C2.806 Ncr_G_C2.806 32 2.3
NCR_G_C2.232 Ncr_G_C2.232 32 2.3
NCR_G_C2.147 Ncr_G_C2.147 32 2.3
NCR_G_C2.057 Ncr_G_C2.057 32 2.3
NCR_G_C2.845 Ncr_G_C2.845 30 8.9
NCR_G_C2.752 Ncr_G_C2.752 30 8.9
NCR_G_C2.700 Ncr_G_C2.700 30 8.9
NCR_G_C2.633 Ncr_G_C2.633 30 8.9
NCR_G_C2.592 Ncr_G_C2.592 30 8.9
NCR_G_C2.583 Ncr_G_C2.583 30 8.9
NCR_G_C2.568 Ncr_G_C2.568 30 8.9
NCR_G_C2.416 Ncr_G_C2.416 30 8.9
NCR_G_C2.403 Ncr_G_C2.403 30 8.9
NCR_G_C2.379 Ncr_G_C2.379 30 8.9
NCR_G_C2.343 Ncr_G_C2.343 30 8.9
NCR_G_C2.339 Ncr_G_C2.339 30 8.9
NCR_G_C2.299 Ncr_G_C2.299 30 8.9
NCR_G_C2.296 Ncr_G_C2.296 30 8.9
NCR_G_C2.165 Ncr_G_C2.165 30 8.9
NCR_G_C2.146 Ncr_G_C2.146 30 8.9
NCR_G_C2.133 Ncr_G_C2.133 30 8.9
NCR_G_C2.126 Ncr_G_C2.126 30 8.9
NCR_G_C2.095 Ncr_G_C2.095 30 8.9
NCR_G_C2.070 Ncr_G_C2.070 30 8.9
NCR_G_C2.052 Ncr_G_C2.052 30 8.9
NCR_G_C2.021 Ncr_G_C2.021 30 8.9
NCR_G_C2.017 Ncr_G_C2.017 30 8.9
>NCR_G_C2.053 Ncr_G_C2.053
Length = 105864
Score = 54.0 bits (27), Expect = 6e-07
Identities = 75/91 (82%)
Strand = Plus / Plus
Query: 166 atgctcggtatctgcgccgaattcgagcgcatagccaaggctgttatcgacaaggctgaa 225
||||||||||| ||||| |||||||||||||| || |||| ||| || ||||| || ||
Sbjct: 64117 atgctcggtatttgcgctgaattcgagcgcatcgcaaaggttgtcattgacaaagccgag 64176
Query: 226 aaggagcagtcgtctcggcgcaagcgcaaga 256
|| ||| | ||||| || |||||||| ||||
Sbjct: 64177 aaagagaactcgtcacgacgcaagcgtaaga 64207
Score = 38.2 bits (19), Expect = 0.037
Identities = 43/51 (84%)
Strand = Plus / Plus
Query: 15 ttccctgtctctgcactggtgaccttgtttggaaacattcttcaaaatccc 65
||||||||||| || ||||||| || ||||||||||| || || ||||||
Sbjct: 63967 ttccctgtctcggccttggtgacgttatttggaaacatcctccagaatccc 64017
>NCR_G_C2.344 Ncr_G_C2.344
Length = 99019
Score = 38.2 bits (19), Expect = 0.037
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 132 gggcaggaggctgagcaag 150
|||||||||||||||||||
Sbjct: 4222 gggcaggaggctgagcaag 4204
>NCR_G_C2.806 Ncr_G_C2.806
Length = 58655
Score = 32.2 bits (16), Expect = 2.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 109 ttgtcactttcctctc 124
||||||||||||||||
Sbjct: 40570 ttgtcactttcctctc 40555
>NCR_G_C2.232 Ncr_G_C2.232
Length = 60784
Score = 32.2 bits (16), Expect = 2.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 53 tcttcaaaatcccctt 68
||||||||||||||||
Sbjct: 42634 tcttcaaaatcccctt 42619
>NCR_G_C2.147 Ncr_G_C2.147
Length = 124885
Score = 32.2 bits (16), Expect = 2.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 194 gcatagccaaggctgt 209
||||||||||||||||
Sbjct: 91683 gcatagccaaggctgt 91668
Score = 30.2 bits (15), Expect = 8.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 169 ctcggtatctgcgcc 183
|||||||||||||||
Sbjct: 17400 ctcggtatctgcgcc 17386
>NCR_G_C2.057 Ncr_G_C2.057
Length = 66877
Score = 32.2 bits (16), Expect = 2.3
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 212 tcgacaaggctgaaaaggag 231
|||||||||||||| |||||
Sbjct: 38549 tcgacaaggctgaacaggag 38568
>NCR_G_C2.845 Ncr_G_C2.845
Length = 47890
Score = 30.2 bits (15), Expect = 8.9
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 169 ctcggtatctgcgccgaat 187
||||||| |||||||||||
Sbjct: 10795 ctcggtagctgcgccgaat 10813
>NCR_G_C2.752 Ncr_G_C2.752
Length = 67398
Score = 30.2 bits (15), Expect = 8.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 119 cctctctatgcttgg 133
|||||||||||||||
Sbjct: 64447 cctctctatgcttgg 64433
>NCR_G_C2.700 Ncr_G_C2.700
Length = 30638
Score = 30.2 bits (15), Expect = 8.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 66 cttgatcccagggca 80
|||||||||||||||
Sbjct: 17959 cttgatcccagggca 17973
>NCR_G_C2.633 Ncr_G_C2.633
Length = 56076
Score = 30.2 bits (15), Expect = 8.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 13 acttccctgtctctg 27
|||||||||||||||
Sbjct: 12734 acttccctgtctctg 12748
>NCR_G_C2.592 Ncr_G_C2.592
Length = 186696
Score = 30.2 bits (15), Expect = 8.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 49 acattcttcaaaatc 63
|||||||||||||||
Sbjct: 185802 acattcttcaaaatc 185816
>NCR_G_C2.583 Ncr_G_C2.583
Length = 64275
Score = 30.2 bits (15), Expect = 8.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 216 caaggctgaaaagga 230
|||||||||||||||
Sbjct: 18630 caaggctgaaaagga 18616
>NCR_G_C2.568 Ncr_G_C2.568
Length = 267169
Score = 30.2 bits (15), Expect = 8.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 270 gaacaaatcatccgc 284
|||||||||||||||
Sbjct: 145346 gaacaaatcatccgc 145360
>NCR_G_C2.416 Ncr_G_C2.416
Length = 188447
Score = 30.2 bits (15), Expect = 8.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 230 agcagtcgtctcggc 244
|||||||||||||||
Sbjct: 83065 agcagtcgtctcggc 83079
>NCR_G_C2.403 Ncr_G_C2.403
Length = 165442
Score = 30.2 bits (15), Expect = 8.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 217 aaggctgaaaaggag 231
|||||||||||||||
Sbjct: 49065 aaggctgaaaaggag 49079
>NCR_G_C2.379 Ncr_G_C2.379
Length = 245776
Score = 30.2 bits (15), Expect = 8.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 217 aaggctgaaaaggag 231
|||||||||||||||
Sbjct: 75273 aaggctgaaaaggag 75287
>NCR_G_C2.343 Ncr_G_C2.343
Length = 142167
Score = 30.2 bits (15), Expect = 8.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 169 ctcggtatctgcgcc 183
|||||||||||||||
Sbjct: 95596 ctcggtatctgcgcc 95582
>NCR_G_C2.339 Ncr_G_C2.339
Length = 67925
Score = 30.2 bits (15), Expect = 8.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 243 gcgcaagcgcaagaa 257
|||||||||||||||
Sbjct: 35771 gcgcaagcgcaagaa 35757
>NCR_G_C2.299 Ncr_G_C2.299
Length = 59900
Score = 30.2 bits (15), Expect = 8.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 244 cgcaagcgcaagaac 258
|||||||||||||||
Sbjct: 56725 cgcaagcgcaagaac 56711
>NCR_G_C2.296 Ncr_G_C2.296
Length = 137551
Score = 30.2 bits (15), Expect = 8.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 53 tcttcaaaatcccct 67
|||||||||||||||
Sbjct: 82540 tcttcaaaatcccct 82526
>NCR_G_C2.165 Ncr_G_C2.165
Length = 11034
Score = 30.2 bits (15), Expect = 8.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 135 caggaggctgagcaa 149
|||||||||||||||
Sbjct: 4689 caggaggctgagcaa 4675
>NCR_G_C2.146 Ncr_G_C2.146
Length = 38737
Score = 30.2 bits (15), Expect = 8.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 136 aggaggctgagcaag 150
|||||||||||||||
Sbjct: 17914 aggaggctgagcaag 17928
>NCR_G_C2.133 Ncr_G_C2.133
Length = 61891
Score = 30.2 bits (15), Expect = 8.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 10 tttacttccctgtct 24
|||||||||||||||
Sbjct: 20795 tttacttccctgtct 20781
>NCR_G_C2.126 Ncr_G_C2.126
Length = 65036
Score = 30.2 bits (15), Expect = 8.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 58 aaaatccccttgatc 72
|||||||||||||||
Sbjct: 28177 aaaatccccttgatc 28163
>NCR_G_C2.095 Ncr_G_C2.095
Length = 82161
Score = 30.2 bits (15), Expect = 8.9
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 19 ctgtctctgcactggtgac 37
||||| |||||||||||||
Sbjct: 47840 ctgtcactgcactggtgac 47858
>NCR_G_C2.070 Ncr_G_C2.070
Length = 89843
Score = 30.2 bits (15), Expect = 8.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 288 tgtgcccgctgcccg 302
|||||||||||||||
Sbjct: 51058 tgtgcccgctgcccg 51072
>NCR_G_C2.052 Ncr_G_C2.052
Length = 29102
Score = 30.2 bits (15), Expect = 8.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 27 gcactggtgaccttg 41
|||||||||||||||
Sbjct: 26995 gcactggtgaccttg 27009
>NCR_G_C2.021 Ncr_G_C2.021
Length = 86769
Score = 30.2 bits (15), Expect = 8.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 249 gcgcaagaaccagga 263
|||||||||||||||
Sbjct: 50467 gcgcaagaaccagga 50453
Score = 30.2 bits (15), Expect = 8.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 217 aaggctgaaaaggag 231
|||||||||||||||
Sbjct: 62300 aaggctgaaaaggag 62286
>NCR_G_C2.017 Ncr_G_C2.017
Length = 86020
Score = 30.2 bits (15), Expect = 8.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 210 tatcgacaaggctga 224
|||||||||||||||
Sbjct: 6148 tatcgacaaggctga 6162
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5774
Number of Sequences: 995
Number of extensions: 5774
Number of successful extensions: 32
Number of sequences better than 10.0: 29
length of query: 312
length of database: 37,969,317
effective HSP length: 16
effective length of query: 296
effective length of database: 37,953,397
effective search space: 11234205512
effective search space used: 11234205512
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)