BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1610_G04_M0
8ZT.seq
(358 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.581 Ncr_G_C2.581 34 0.66
NCR_G_C2.038 Ncr_G_C2.038 34 0.66
NCR_G_C2.624 Ncr_G_C2.624 32 2.6
NCR_G_C2.622 Ncr_G_C2.622 32 2.6
NCR_G_C2.376 Ncr_G_C2.376 32 2.6
NCR_G_C2.327 Ncr_G_C2.327 32 2.6
NCR_G_C2.205 Ncr_G_C2.205 32 2.6
>NCR_G_C2.581 Ncr_G_C2.581
Length = 21111
Score = 34.2 bits (17), Expect = 0.66
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 287 tcctttggacgacgttc 303
|||||||||||||||||
Sbjct: 2071 tcctttggacgacgttc 2055
>NCR_G_C2.038 Ncr_G_C2.038
Length = 68631
Score = 34.2 bits (17), Expect = 0.66
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 52 agcgacaagtcgatctcgttg 72
||||||||||| |||||||||
Sbjct: 9357 agcgacaagtccatctcgttg 9337
>NCR_G_C2.624 Ncr_G_C2.624
Length = 145122
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 120 ggttcacttccagccc 135
||||||||||||||||
Sbjct: 54861 ggttcacttccagccc 54876
>NCR_G_C2.622 Ncr_G_C2.622
Length = 123388
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 38 ccaagttattgtgaag 53
||||||||||||||||
Sbjct: 92024 ccaagttattgtgaag 92039
>NCR_G_C2.376 Ncr_G_C2.376
Length = 11769
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 134 cctcaaaggcctgctc 149
||||||||||||||||
Sbjct: 3518 cctcaaaggcctgctc 3533
>NCR_G_C2.327 Ncr_G_C2.327
Length = 167595
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 129 ccagccctcaaaggcc 144
||||||||||||||||
Sbjct: 80959 ccagccctcaaaggcc 80974
>NCR_G_C2.205 Ncr_G_C2.205
Length = 197179
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 134 cctcaaaggcctgctc 149
||||||||||||||||
Sbjct: 34675 cctcaaaggcctgctc 34660
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5476
Number of Sequences: 995
Number of extensions: 5476
Number of successful extensions: 23
Number of sequences better than 10.0: 7
length of query: 358
length of database: 37,969,317
effective HSP length: 16
effective length of query: 342
effective length of database: 37,953,397
effective search space: 12980061774
effective search space used: 12980061774
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)