BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1610_H02_O0
4ZT.seq
(333 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.044 Ncr_G_C2.044 36 0.16
NCR_G_C2.322 Ncr_G_C2.322 34 0.61
NCR_G_C2.772 Ncr_G_C2.772 32 2.4
NCR_G_C2.676 Ncr_G_C2.676 32 2.4
NCR_G_C2.639 Ncr_G_C2.639 32 2.4
NCR_G_C2.630 Ncr_G_C2.630 32 2.4
NCR_G_C2.570 Ncr_G_C2.570 32 2.4
NCR_G_C2.548 Ncr_G_C2.548 32 2.4
NCR_G_C2.537 Ncr_G_C2.537 32 2.4
NCR_G_C2.430 Ncr_G_C2.430 32 2.4
NCR_G_C2.407 Ncr_G_C2.407 32 2.4
NCR_G_C2.364 Ncr_G_C2.364 32 2.4
NCR_G_C2.340 Ncr_G_C2.340 32 2.4
NCR_G_C2.339 Ncr_G_C2.339 32 2.4
NCR_G_C2.212 Ncr_G_C2.212 32 2.4
NCR_G_C2.107 Ncr_G_C2.107 32 2.4
NCR_G_C2.040 Ncr_G_C2.040 32 2.4
NCR_G_C2.039 Ncr_G_C2.039 32 2.4
NCR_G_C2.851 Ncr_G_C2.851 30 9.6
NCR_G_C2.759 Ncr_G_C2.759 30 9.6
NCR_G_C2.734 Ncr_G_C2.734 30 9.6
NCR_G_C2.539 Ncr_G_C2.539 30 9.6
NCR_G_C2.503 Ncr_G_C2.503 30 9.6
NCR_G_C2.416 Ncr_G_C2.416 30 9.6
NCR_G_C2.394 Ncr_G_C2.394 30 9.6
NCR_G_C2.388 Ncr_G_C2.388 30 9.6
NCR_G_C2.379 Ncr_G_C2.379 30 9.6
NCR_G_C2.202 Ncr_G_C2.202 30 9.6
NCR_G_C2.184 Ncr_G_C2.184 30 9.6
NCR_G_C2.169 Ncr_G_C2.169 30 9.6
NCR_G_C2.033 Ncr_G_C2.033 30 9.6
>NCR_G_C2.044 Ncr_G_C2.044
Length = 101344
Score = 36.2 bits (18), Expect = 0.16
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 89 tgctgttgataatggaaa 106
||||||||||||||||||
Sbjct: 96206 tgctgttgataatggaaa 96189
>NCR_G_C2.322 Ncr_G_C2.322
Length = 116391
Score = 34.2 bits (17), Expect = 0.61
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 5 cagaacgtgtcctgttc 21
|||||||||||||||||
Sbjct: 110607 cagaacgtgtcctgttc 110623
>NCR_G_C2.772 Ncr_G_C2.772
Length = 12637
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 225 aggactacaaggaact 240
||||||||||||||||
Sbjct: 5226 aggactacaaggaact 5241
>NCR_G_C2.676 Ncr_G_C2.676
Length = 48155
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 16 ctgttcatttcgcctt 31
||||||||||||||||
Sbjct: 3740 ctgttcatttcgcctt 3755
>NCR_G_C2.639 Ncr_G_C2.639
Length = 36158
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 141 gctgcgtttgttctcg 156
||||||||||||||||
Sbjct: 22009 gctgcgtttgttctcg 22024
>NCR_G_C2.630 Ncr_G_C2.630
Length = 57359
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 141 gctgcgtttgttctcg 156
||||||||||||||||
Sbjct: 41625 gctgcgtttgttctcg 41610
>NCR_G_C2.570 Ncr_G_C2.570
Length = 65061
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 141 gctgcgtttgttctcg 156
||||||||||||||||
Sbjct: 62969 gctgcgtttgttctcg 62984
>NCR_G_C2.548 Ncr_G_C2.548
Length = 30682
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 91 ctgttgataatggaaa 106
||||||||||||||||
Sbjct: 1723 ctgttgataatggaaa 1708
>NCR_G_C2.537 Ncr_G_C2.537
Length = 40376
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 141 gctgcgtttgttctcg 156
||||||||||||||||
Sbjct: 603 gctgcgtttgttctcg 618
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 141 gctgcgtttgttctcg 156
||||||||||||||||
Sbjct: 1093 gctgcgtttgttctcg 1078
>NCR_G_C2.430 Ncr_G_C2.430
Length = 226714
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 202 tttgaggttggtgaag 217
||||||||||||||||
Sbjct: 76786 tttgaggttggtgaag 76771
>NCR_G_C2.407 Ncr_G_C2.407
Length = 67558
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 141 gctgcgtttgttctcg 156
||||||||||||||||
Sbjct: 5210 gctgcgtttgttctcg 5225
>NCR_G_C2.364 Ncr_G_C2.364
Length = 87437
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 141 gctgcgtttgttctcg 156
||||||||||||||||
Sbjct: 4465 gctgcgtttgttctcg 4450
>NCR_G_C2.340 Ncr_G_C2.340
Length = 74466
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 141 gctgcgtttgttctcg 156
||||||||||||||||
Sbjct: 1413 gctgcgtttgttctcg 1398
>NCR_G_C2.339 Ncr_G_C2.339
Length = 67925
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 141 gctgcgtttgttctcg 156
||||||||||||||||
Sbjct: 65115 gctgcgtttgttctcg 65130
>NCR_G_C2.212 Ncr_G_C2.212
Length = 9028
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 141 gctgcgtttgttctcg 156
||||||||||||||||
Sbjct: 5495 gctgcgtttgttctcg 5510
>NCR_G_C2.107 Ncr_G_C2.107
Length = 97891
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 84 gctggtgctgttgata 99
||||||||||||||||
Sbjct: 96593 gctggtgctgttgata 96608
Score = 30.2 bits (15), Expect = 9.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 161 tgttggaaacaatgt 175
|||||||||||||||
Sbjct: 39827 tgttggaaacaatgt 39841
>NCR_G_C2.040 Ncr_G_C2.040
Length = 2279
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 141 gctgcgtttgttctcg 156
||||||||||||||||
Sbjct: 1706 gctgcgtttgttctcg 1691
>NCR_G_C2.039 Ncr_G_C2.039
Length = 12103
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 141 gctgcgtttgttctcg 156
||||||||||||||||
Sbjct: 9931 gctgcgtttgttctcg 9946
>NCR_G_C2.851 Ncr_G_C2.851
Length = 16919
Score = 30.2 bits (15), Expect = 9.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 309 acaagataacaagattgaa 327
|||||| ||||||||||||
Sbjct: 9408 acaagacaacaagattgaa 9426
>NCR_G_C2.759 Ncr_G_C2.759
Length = 32694
Score = 30.2 bits (15), Expect = 9.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 136 actatgctgcgtttg 150
|||||||||||||||
Sbjct: 3887 actatgctgcgtttg 3901
>NCR_G_C2.734 Ncr_G_C2.734
Length = 32712
Score = 30.2 bits (15), Expect = 9.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 89 tgctgttgataatgg 103
|||||||||||||||
Sbjct: 28620 tgctgttgataatgg 28606
>NCR_G_C2.539 Ncr_G_C2.539
Length = 95985
Score = 30.2 bits (15), Expect = 9.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 145 cgtttgttctcgatc 159
|||||||||||||||
Sbjct: 63353 cgtttgttctcgatc 63367
>NCR_G_C2.503 Ncr_G_C2.503
Length = 39824
Score = 30.2 bits (15), Expect = 9.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 197 agggatttgaggttggtga 215
||||||||||||| |||||
Sbjct: 27778 agggatttgaggtgggtga 27796
>NCR_G_C2.416 Ncr_G_C2.416
Length = 188447
Score = 30.2 bits (15), Expect = 9.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 197 agggatttgaggttg 211
|||||||||||||||
Sbjct: 28358 agggatttgaggttg 28372
>NCR_G_C2.394 Ncr_G_C2.394
Length = 74819
Score = 30.2 bits (15), Expect = 9.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 309 acaagataacaagat 323
|||||||||||||||
Sbjct: 11528 acaagataacaagat 11542
>NCR_G_C2.388 Ncr_G_C2.388
Length = 80958
Score = 30.2 bits (15), Expect = 9.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 48 aagcatgtcgatgag 62
|||||||||||||||
Sbjct: 52737 aagcatgtcgatgag 52751
>NCR_G_C2.379 Ncr_G_C2.379
Length = 245776
Score = 30.2 bits (15), Expect = 9.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 197 agggatttgaggttg 211
|||||||||||||||
Sbjct: 117473 agggatttgaggttg 117459
>NCR_G_C2.202 Ncr_G_C2.202
Length = 148112
Score = 30.2 bits (15), Expect = 9.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 84 gctggtgctgttgat 98
|||||||||||||||
Sbjct: 136299 gctggtgctgttgat 136285
>NCR_G_C2.184 Ncr_G_C2.184
Length = 27440
Score = 30.2 bits (15), Expect = 9.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 265 ctattaccataccaactgc 283
||||| |||||||||||||
Sbjct: 6575 ctattgccataccaactgc 6593
>NCR_G_C2.169 Ncr_G_C2.169
Length = 54533
Score = 30.2 bits (15), Expect = 9.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 247 cgtataggcacaaca 261
|||||||||||||||
Sbjct: 7496 cgtataggcacaaca 7510
>NCR_G_C2.033 Ncr_G_C2.033
Length = 166617
Score = 30.2 bits (15), Expect = 9.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 83 agctggtgctgttga 97
|||||||||||||||
Sbjct: 149104 agctggtgctgttga 149090
Score = 30.2 bits (15), Expect = 9.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 82 aagctggtgctgttg 96
|||||||||||||||
Sbjct: 149090 aagctggtgctgttg 149076
Score = 30.2 bits (15), Expect = 9.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 128 gcccgggtactatgc 142
|||||||||||||||
Sbjct: 15570 gcccgggtactatgc 15556
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5491
Number of Sequences: 995
Number of extensions: 5491
Number of successful extensions: 35
Number of sequences better than 10.0: 31
length of query: 333
length of database: 37,969,317
effective HSP length: 16
effective length of query: 317
effective length of database: 37,953,397
effective search space: 12031226849
effective search space used: 12031226849
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)