BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1610_H03_O0
6ZT.seq
(513 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.694 Ncr_G_C2.694 34 0.96
NCR_G_C2.592 Ncr_G_C2.592 34 0.96
NCR_G_C2.032 Ncr_G_C2.032 34 0.96
NCR_G_C2.850 Ncr_G_C2.850 32 3.8
NCR_G_C2.733 Ncr_G_C2.733 32 3.8
NCR_G_C2.569 Ncr_G_C2.569 32 3.8
NCR_G_C2.430 Ncr_G_C2.430 32 3.8
NCR_G_C2.111 Ncr_G_C2.111 32 3.8
NCR_G_C2.106 Ncr_G_C2.106 32 3.8
NCR_G_C2.057 Ncr_G_C2.057 32 3.8
NCR_G_C2.046 Ncr_G_C2.046 32 3.8
NCR_G_C2.013 Ncr_G_C2.013 32 3.8
>NCR_G_C2.694 Ncr_G_C2.694
Length = 56391
Score = 34.2 bits (17), Expect = 0.96
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 112 taaaacgtcagaatctc 128
|||||||||||||||||
Sbjct: 12302 taaaacgtcagaatctc 12286
>NCR_G_C2.592 Ncr_G_C2.592
Length = 186696
Score = 34.2 bits (17), Expect = 0.96
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 352 tgggtcttgctcgcgga 368
|||||||||||||||||
Sbjct: 10393 tgggtcttgctcgcgga 10377
>NCR_G_C2.032 Ncr_G_C2.032
Length = 80998
Score = 34.2 bits (17), Expect = 0.96
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 398 acagcccaagaccttgg 414
|||||||||||||||||
Sbjct: 66916 acagcccaagaccttgg 66900
>NCR_G_C2.850 Ncr_G_C2.850
Length = 26337
Score = 32.2 bits (16), Expect = 3.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 14 tcggtcatgatttcga 29
||||||||||||||||
Sbjct: 11591 tcggtcatgatttcga 11576
>NCR_G_C2.733 Ncr_G_C2.733
Length = 28276
Score = 32.2 bits (16), Expect = 3.8
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 208 tggcacaacgccctcc 223
||||||||||||||||
Sbjct: 7502 tggcacaacgccctcc 7517
>NCR_G_C2.569 Ncr_G_C2.569
Length = 192756
Score = 32.2 bits (16), Expect = 3.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 309 cgtgctcacaccaaag 324
||||||||||||||||
Sbjct: 100368 cgtgctcacaccaaag 100353
>NCR_G_C2.430 Ncr_G_C2.430
Length = 226714
Score = 32.2 bits (16), Expect = 3.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 159 cttttcacaccaaaaa 174
||||||||||||||||
Sbjct: 97159 cttttcacaccaaaaa 97144
>NCR_G_C2.111 Ncr_G_C2.111
Length = 322912
Score = 32.2 bits (16), Expect = 3.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 159 cttttcacaccaaaaa 174
||||||||||||||||
Sbjct: 41388 cttttcacaccaaaaa 41373
>NCR_G_C2.106 Ncr_G_C2.106
Length = 177512
Score = 32.2 bits (16), Expect = 3.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 242 cctccagattcttctc 257
||||||||||||||||
Sbjct: 95876 cctccagattcttctc 95861
>NCR_G_C2.057 Ncr_G_C2.057
Length = 66877
Score = 32.2 bits (16), Expect = 3.8
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 403 ccaagaccttggaaga 418
||||||||||||||||
Sbjct: 6872 ccaagaccttggaaga 6887
>NCR_G_C2.046 Ncr_G_C2.046
Length = 62443
Score = 32.2 bits (16), Expect = 3.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 96 aaaggatgtcaatccc 111
||||||||||||||||
Sbjct: 20361 aaaggatgtcaatccc 20346
>NCR_G_C2.013 Ncr_G_C2.013
Length = 121415
Score = 32.2 bits (16), Expect = 3.8
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 434 ttctaggcttggttta 449
||||||||||||||||
Sbjct: 104094 ttctaggcttggttta 104109
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8229
Number of Sequences: 995
Number of extensions: 8229
Number of successful extensions: 12
Number of sequences better than 10.0: 12
length of query: 513
length of database: 37,969,317
effective HSP length: 17
effective length of query: 496
effective length of database: 37,952,402
effective search space: 18824391392
effective search space used: 18824391392
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)