BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1610_H11_O2
2ZT.seq
(324 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.497 Ncr_G_C2.497 34 0.60
NCR_G_C2.234 Ncr_G_C2.234 34 0.60
NCR_G_C2.739 Ncr_G_C2.739 32 2.4
NCR_G_C2.195 Ncr_G_C2.195 32 2.4
NCR_G_C2.076 Ncr_G_C2.076 32 2.4
NCR_G_C2.042_5 Ncr_G_C2.042_5.seq Continuation (5 of 6) of Ncr_G... 32 2.4
NCR_G_C2.661 Ncr_G_C2.661 30 9.3
NCR_G_C2.653 Ncr_G_C2.653 30 9.3
NCR_G_C2.640 Ncr_G_C2.640 30 9.3
NCR_G_C2.615 Ncr_G_C2.615 30 9.3
NCR_G_C2.509 Ncr_G_C2.509 30 9.3
NCR_G_C2.411 Ncr_G_C2.411 30 9.3
NCR_G_C2.344 Ncr_G_C2.344 30 9.3
NCR_G_C2.340 Ncr_G_C2.340 30 9.3
NCR_G_C2.322 Ncr_G_C2.322 30 9.3
NCR_G_C2.239 Ncr_G_C2.239 30 9.3
NCR_G_C2.230 Ncr_G_C2.230 30 9.3
NCR_G_C2.220 Ncr_G_C2.220 30 9.3
NCR_G_C2.162 Ncr_G_C2.162 30 9.3
NCR_G_C2.145 Ncr_G_C2.145 30 9.3
NCR_G_C2.128 Ncr_G_C2.128 30 9.3
NCR_G_C2.044 Ncr_G_C2.044 30 9.3
>NCR_G_C2.497 Ncr_G_C2.497
Length = 192966
Score = 34.2 bits (17), Expect = 0.60
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 77 cctgagcccgccaagtc 93
|||||||||||||||||
Sbjct: 74563 cctgagcccgccaagtc 74547
>NCR_G_C2.234 Ncr_G_C2.234
Length = 40564
Score = 34.2 bits (17), Expect = 0.60
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 111 aattgggatgggatgac 127
|||||||||||||||||
Sbjct: 32635 aattgggatgggatgac 32651
>NCR_G_C2.739 Ncr_G_C2.739
Length = 74477
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 12 tggcgacgcctgtgaa 27
||||||||||||||||
Sbjct: 27886 tggcgacgcctgtgaa 27901
>NCR_G_C2.195 Ncr_G_C2.195
Length = 69890
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 78 ctgagcccgccaagtc 93
||||||||||||||||
Sbjct: 66531 ctgagcccgccaagtc 66516
>NCR_G_C2.076 Ncr_G_C2.076
Length = 241344
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 146 tgagttacctatcgga 161
||||||||||||||||
Sbjct: 108962 tgagttacctatcgga 108977
>NCR_G_C2.042_5 Ncr_G_C2.042_5.seq Continuation (5 of 6) of Ncr_G_C2.042
from base 400001
Length = 110000
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 20 cctgtgaaggctatca 35
||||||||||||||||
Sbjct: 33053 cctgtgaaggctatca 33068
>NCR_G_C2.661 Ncr_G_C2.661
Length = 81294
Score = 30.2 bits (15), Expect = 9.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 76 acctgagcccgccaagtcg 94
|||| ||||||||||||||
Sbjct: 4850 accttagcccgccaagtcg 4868
>NCR_G_C2.653 Ncr_G_C2.653
Length = 89660
Score = 30.2 bits (15), Expect = 9.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 259 gcaaaactgtatcca 273
|||||||||||||||
Sbjct: 63687 gcaaaactgtatcca 63701
>NCR_G_C2.640 Ncr_G_C2.640
Length = 147149
Score = 30.2 bits (15), Expect = 9.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 111 aattgggatgggatg 125
|||||||||||||||
Sbjct: 103742 aattgggatgggatg 103756
>NCR_G_C2.615 Ncr_G_C2.615
Length = 130067
Score = 30.2 bits (15), Expect = 9.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 69 gagttgaacctgagc 83
|||||||||||||||
Sbjct: 84105 gagttgaacctgagc 84091
>NCR_G_C2.509 Ncr_G_C2.509
Length = 86172
Score = 30.2 bits (15), Expect = 9.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 137 gacctgttatgagtt 151
|||||||||||||||
Sbjct: 35586 gacctgttatgagtt 35572
>NCR_G_C2.411 Ncr_G_C2.411
Length = 84634
Score = 30.2 bits (15), Expect = 9.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 224 agttattagcattgt 238
|||||||||||||||
Sbjct: 4858 agttattagcattgt 4844
>NCR_G_C2.344 Ncr_G_C2.344
Length = 99019
Score = 30.2 bits (15), Expect = 9.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 125 gacgatatagatgac 139
|||||||||||||||
Sbjct: 39238 gacgatatagatgac 39252
>NCR_G_C2.340 Ncr_G_C2.340
Length = 74466
Score = 30.2 bits (15), Expect = 9.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 80 gagcccgccaagtcg 94
|||||||||||||||
Sbjct: 11279 gagcccgccaagtcg 11265
>NCR_G_C2.322 Ncr_G_C2.322
Length = 116391
Score = 30.2 bits (15), Expect = 9.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 49 agaagatctggaaac 63
|||||||||||||||
Sbjct: 15246 agaagatctggaaac 15260
>NCR_G_C2.239 Ncr_G_C2.239
Length = 49522
Score = 30.2 bits (15), Expect = 9.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 14 gcgacgcctgtgaag 28
|||||||||||||||
Sbjct: 9609 gcgacgcctgtgaag 9623
>NCR_G_C2.230 Ncr_G_C2.230
Length = 223934
Score = 30.2 bits (15), Expect = 9.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 240 aaaaggcgttcagag 254
|||||||||||||||
Sbjct: 131558 aaaaggcgttcagag 131544
>NCR_G_C2.220 Ncr_G_C2.220
Length = 142147
Score = 30.2 bits (15), Expect = 9.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 307 taatacgagttgaac 321
|||||||||||||||
Sbjct: 119388 taatacgagttgaac 119402
>NCR_G_C2.162 Ncr_G_C2.162
Length = 33378
Score = 30.2 bits (15), Expect = 9.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 105 atcagaaattgggat 119
|||||||||||||||
Sbjct: 5322 atcagaaattgggat 5336
>NCR_G_C2.145 Ncr_G_C2.145
Length = 35249
Score = 30.2 bits (15), Expect = 9.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 25 gaaggctatcaaaac 39
|||||||||||||||
Sbjct: 744 gaaggctatcaaaac 730
>NCR_G_C2.128 Ncr_G_C2.128
Length = 227066
Score = 30.2 bits (15), Expect = 9.3
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 13 ggcgacgcctgtgaaggctatca 35
|||| |||||| |||||||||||
Sbjct: 83963 ggcgccgcctgcgaaggctatca 83941
>NCR_G_C2.044 Ncr_G_C2.044
Length = 101344
Score = 30.2 bits (15), Expect = 9.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 121 ggatgacgatataga 135
|||||||||||||||
Sbjct: 35340 ggatgacgatataga 35354
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4235
Number of Sequences: 995
Number of extensions: 4235
Number of successful extensions: 22
Number of sequences better than 10.0: 22
length of query: 324
length of database: 37,969,317
effective HSP length: 16
effective length of query: 308
effective length of database: 37,953,397
effective search space: 11689646276
effective search space used: 11689646276
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)