TBLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1610_H11_O2
2ZT.seq
(324 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.721 Ncr_G_C2.721 33 0.13
NCR_G_C2.332 Ncr_G_C2.332 31 0.33
NCR_G_C2.340 Ncr_G_C2.340 30 0.63
NCR_G_C2.344 Ncr_G_C2.344 30 0.86
NCR_G_C2.753 Ncr_G_C2.753 29 1.2
NCR_G_C2.321 Ncr_G_C2.321 29 1.6
NCR_G_C2.312 Ncr_G_C2.312 29 1.6
NCR_G_C2.215 Ncr_G_C2.215 29 1.6
NCR_G_C2.086 Ncr_G_C2.086 29 2.2
NCR_G_C2.175 Ncr_G_C2.175 29 2.2
NCR_G_C2.218 Ncr_G_C2.218 29 2.2
NCR_G_C2.129 Ncr_G_C2.129 29 2.2
NCR_G_C2.329 Ncr_G_C2.329 28 3.1
NCR_G_C2.032 Ncr_G_C2.032 28 3.1
NCR_G_C2.042_1 Ncr_G_C2.042_1.seq Continuation (1 of 6) of Ncr_G... 25 3.4
NCR_G_C2.847 Ncr_G_C2.847 27 5.8
NCR_G_C2.433 Ncr_G_C2.433 27 5.8
NCR_G_C2.359 Ncr_G_C2.359 27 5.8
NCR_G_C2.727 Ncr_G_C2.727 27 5.8
NCR_G_C2.423 Ncr_G_C2.423 25 6.0
NCR_G_C2.255 Ncr_G_C2.255 27 8.0
NCR_G_C2.047 Ncr_G_C2.047 27 8.0
NCR_G_C2.499 Ncr_G_C2.499 27 8.0
NCR_G_C2.301 Ncr_G_C2.301 27 8.0
NCR_G_C2.149 Ncr_G_C2.149 27 8.0
NCR_G_C2.681 Ncr_G_C2.681 27 8.0
NCR_G_C2.080 Ncr_G_C2.080 27 8.0
NCR_G_C2.148 Ncr_G_C2.148 27 8.0
NCR_G_C2.156 Ncr_G_C2.156 22 8.3
NCR_G_C2.439 Ncr_G_C2.439 25 8.4
NCR_G_C2.336 Ncr_G_C2.336 25 9.2
>NCR_G_C2.721 Ncr_G_C2.721
Length = 23504
Score = 32.7 bits (65), Expect = 0.13
Identities = 10/16 (62%), Positives = 12/16 (74%)
Frame = +1 / -3
Query: 175 YFFYFFLQRDMHCMQQ 222
YFF+FFL R+ HC Q
Sbjct: 17349 YFFFFFLSREFHCRAQ 17302
>NCR_G_C2.332 Ncr_G_C2.332
Length = 41927
Score = 31.3 bits (62), Expect = 0.33
Identities = 10/18 (55%), Positives = 13/18 (71%)
Frame = -3 / +2
Query: 322 CSTRIICIMYRIWNTAVD 269
C TRI+CI +R W T V+
Sbjct: 39539 CQTRILCIAFRGWRTGVN 39592
>NCR_G_C2.340 Ncr_G_C2.340
Length = 74466
Score = 30.4 bits (60), Expect = 0.63
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2 / -1
Query: 116 PISDRLIPTWRAQVQLSWFP 57
P+SDRL WR + SWFP
Sbjct: 52194 PLSDRLGNLWRMSERESWFP 52135
>NCR_G_C2.344 Ncr_G_C2.344
Length = 99019
Score = 29.9 bits (59), Expect = 0.86
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2 / -2
Query: 134 LYRHPIPISDRLIPTWRAQVQLSWF 60
L+ HPIP S R +PT + WF
Sbjct: 80859 LFVHPIPYSGRRVPTGAPTCPVVWF 80785
>NCR_G_C2.753 Ncr_G_C2.753
Length = 34058
Score = 29.5 bits (58), Expect = 1.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1 / -1
Query: 154 LSEHLQRYFFYFFLQRDMHCMQQELLALLKGVQS 255
L+ L +Y F+F L RD CM + L +QS
Sbjct: 16712 LATRLSKYLFFFRLIRDCRCMGRTCLLTTIDLQS 16611
>NCR_G_C2.321 Ncr_G_C2.321
Length = 66076
Score = 29.0 bits (57), Expect = 1.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2 / +2
Query: 122 PIPISDRLIPTWRAQVQLSW 63
P P+S L PTW + +LSW
Sbjct: 22196 PPPVSSGLAPTWPTR*RLSW 22255
>NCR_G_C2.312 Ncr_G_C2.312
Length = 102336
Score = 29.0 bits (57), Expect = 1.6
Identities = 12/32 (37%), Positives = 19/32 (58%)
Frame = -1 / -2
Query: 315 LVLFVSCIVSGILLWIQFCNTLNAF*QC**LL 220
L+L + + GI ++I +CN NA + * LL
Sbjct: 50090 LILLIKKLSGGIYIYINYCNINNAILKI*YLL 49995
>NCR_G_C2.215 Ncr_G_C2.215
Length = 79770
Score = 29.0 bits (57), Expect = 1.6
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2 / +1
Query: 122 PIPISDRLIPTWRAQ 78
P+P+S +L PTW AQ
Sbjct: 64981 PLPLSTKLFPTWLAQ 65025
>NCR_G_C2.086 Ncr_G_C2.086
Length = 127572
Score = 28.6 bits (56), Expect = 2.2
Identities = 11/35 (31%), Positives = 19/35 (53%)
Frame = -3 / -1
Query: 322 CSTRIICIMYRIWNTAVDTVLQYSERLLTMLITPA 218
C T + C Y+ T D+ + + + T+LITP+
Sbjct: 24534 CRTEVSCPFYKSTLTRADSEPRAARAVFTLLITPS 24430
>NCR_G_C2.175 Ncr_G_C2.175
Length = 57986
Score = 28.6 bits (56), Expect = 2.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2 / +2
Query: 293 SYLEYCCGYSFAIL*TPFNNAN 228
SYLEYCC +S I +P A+
Sbjct: 57785 SYLEYCCFFSLPIKVSPQRTAH 57850
>NCR_G_C2.218 Ncr_G_C2.218
Length = 129490
Score = 28.6 bits (56), Expect = 2.2
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -3 / +1
Query: 76 FNSHGFQIFYALCFDSL 26
FNS GF IF LCF L
Sbjct: 92959 FNSFGFLIFVVLCFSCL 93009
>NCR_G_C2.129 Ncr_G_C2.129
Length = 50015
Score = 28.6 bits (56), Expect = 2.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2 / +2
Query: 140 GHLYRHPIPISDRLIPTWRAQVQLS 66
G L R P+P +D P W +Q LS
Sbjct: 3932 GFLLRIPLPSTDSCAPLWPSQTTLS 4006
>NCR_G_C2.329 Ncr_G_C2.329
Length = 53959
Score = 28.1 bits (55), Expect = 3.1
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -2 / -1
Query: 95 PTWRAQVQLSWFP 57
PTW A +Q+ WFP
Sbjct: 44554 PTWNALLQVMWFP 44516
>NCR_G_C2.032 Ncr_G_C2.032
Length = 80998
Score = 28.1 bits (55), Expect = 3.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2 / -2
Query: 161 SDR*LITGHLYRHPIPIS 108
S R LI+GHL RH IP++
Sbjct: 29115 SGRFLISGHLNRHAIPLT 29062
>NCR_G_C2.042_1 Ncr_G_C2.042_1.seq Continuation (1 of 6) of
Ncr_G_C2.042 from base 1
Length = 110000
Score = 24.9 bits (48), Expect(2) = 3.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1 / -3
Query: 175 YFFYFFLQRDMHCMQQEL 228
+FF+FFL+ + C EL
Sbjct: 3507 FFFFFFLRDRLRCGDDEL 3454
Score = 20.8 bits (39), Expect(2) = 3.4
Identities = 6/14 (42%), Positives = 9/14 (63%)
Frame = +1 / -2
Query: 148 SYLSEHLQRYFFYF 189
S+ SE +FF+F
Sbjct: 3547 SFFSEFFFFFFFFF 3506
>NCR_G_C2.847 Ncr_G_C2.847
Length = 44665
Score = 27.2 bits (53), Expect = 5.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3 / -1
Query: 295 YRIWNTAVDTVLQYSERLLTMLI 227
+R W T +D +LQY + T L+
Sbjct: 39034 FRNWTTTLDAILQYRQDFTTNLM 38966
>NCR_G_C2.433 Ncr_G_C2.433
Length = 43583
Score = 27.2 bits (53), Expect = 5.8
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -2 / +3
Query: 140 GHLYRHPIPISDRLIPTWRAQVQLSWFPD 54
G + H IP+S + + + +SWFP+
Sbjct: 15015 GESHSHSIPLSKAAVLIRSSPLDVSWFPE 15101
>NCR_G_C2.359 Ncr_G_C2.359
Length = 41101
Score = 27.2 bits (53), Expect = 5.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2 / +2
Query: 143 TGHLYRHPIPISDRLIPTW 87
TG+LY HP+ L P W
Sbjct: 32564 TGYLYGHPVAGQGSLTPLW 32620
>NCR_G_C2.727 Ncr_G_C2.727
Length = 67009
Score = 27.2 bits (53), Expect = 5.8
Identities = 11/32 (34%), Positives = 16/32 (49%)
Frame = -3 / +1
Query: 253 SERLLTMLITPAAYNACPFVXXXXXNTAVNAP 158
S RLLT++ ++ CP +T V AP
Sbjct: 31600 SHRLLTLVAESCSHVECPLFSILNTSTTVGAP 31695
>NCR_G_C2.423 Ncr_G_C2.423
Length = 97362
Score = 25.3 bits (49), Expect(2) = 6.0
Identities = 11/29 (37%), Positives = 13/29 (43%)
Frame = +2 / +2
Query: 26 KAIKTKSIEDLETMRVEPEPAKSVSIYQK 112
K +K +EDLE E SI QK
Sbjct: 37979 KLVKRSKLEDLERNMKRAEDTLQTSILQK 38065
Score = 19.4 bits (36), Expect(2) = 6.0
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +3 / +2
Query: 210 LYAAGVISIVK 242
LYAA I I+K
Sbjct: 38069 LYAAPYIRIIK 38101
>NCR_G_C2.255 Ncr_G_C2.255
Length = 59092
Score = 26.7 bits (52), Expect = 8.0
Identities = 7/16 (43%), Positives = 13/16 (80%)
Frame = +1 / -1
Query: 142 VMSYLSEHLQRYFFYF 189
++S+L+ HL +FF+F
Sbjct: 19393 IISFLAFHLSFFFFFF 19346
>NCR_G_C2.047 Ncr_G_C2.047
Length = 11556
Score = 26.7 bits (52), Expect = 8.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1 / -2
Query: 19 ACEGYQNKEHRRSGNHES*T*ARQVGINLSE 111
+CE Q EH RSG +ES + I LSE
Sbjct: 4994 SCESDQLMEHNRSGKNESESLTAPSCIPLSE 4902
>NCR_G_C2.499 Ncr_G_C2.499
Length = 19845
Score = 26.7 bits (52), Expect = 8.0
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1 / +1
Query: 175 YFFYFFLQRDMHC 213
YFFYFF+ R+ C
Sbjct: 4258 YFFYFFIGREFMC 4296
>NCR_G_C2.301 Ncr_G_C2.301
Length = 71471
Score = 26.7 bits (52), Expect = 8.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1 / +1
Query: 196 QRDMHCMQQELLALLKGVQSIAKLYPQQYSR 288
Q D H Q + + LL S+ LYP Y++
Sbjct: 60103 QHDQHRKQSKSIKLLGSPGSLVMLYPIHYAK 60195
>NCR_G_C2.149 Ncr_G_C2.149
Length = 60481
Score = 26.7 bits (52), Expect = 8.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1 / -2
Query: 151 YLSEHLQRYFFYFF 192
YLS HL +FF+FF
Sbjct: 10899 YLSLHLSTWFFFFF 10858
>NCR_G_C2.681 Ncr_G_C2.681
Length = 124507
Score = 26.7 bits (52), Expect = 8.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2 / -1
Query: 131 YRHPIPISDRLIPTWRAQVQLSW 63
YRH I +S R++ VQL W
Sbjct: 77290 YRHVIDVSSRVLVLCSCAVQLRW 77222
>NCR_G_C2.080 Ncr_G_C2.080
Length = 6236
Score = 26.7 bits (52), Expect = 8.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1 / +2
Query: 309 LFVSCIVSGILLWI 268
LFV C + GILLW+
Sbjct: 5444 LFVFCFLFGILLWV 5485
>NCR_G_C2.148 Ncr_G_C2.148
Length = 98105
Score = 26.7 bits (52), Expect = 8.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3 / -3
Query: 213 YAAGVISIVKRRSEYCKTVSTAVFQIRYMIQIIRVE 320
Y G +R+ E K ++ ++RY + IIR+E
Sbjct: 27639 YPFGQAGAARRQQEGLKRITWIRAEVRYSLDIIRLE 27532
>NCR_G_C2.156 Ncr_G_C2.156
Length = 67929
Score = 22.1 bits (42), Expect(2) = 8.3
Identities = 8/32 (25%), Positives = 16/32 (50%)
Frame = +1 / -3
Query: 172 RYFFYFFLQRDMHCMQQELLALLKGVQSIAKL 267
R++ +F+L C+Q L++ +I L
Sbjct: 13846 RFYLFFYLTHYFLCIQPTSLSIPSSTTTICHL 13751
Score = 22.1 bits (42), Expect(2) = 8.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3 / -2
Query: 6 RSWRRL*RLSKQRA*KIWK 62
R+W+ +* L + KIWK
Sbjct: 13988 RNWQSI*LLIRDSCWKIWK 13932
>NCR_G_C2.439 Ncr_G_C2.439
Length = 63445
Score = 24.9 bits (48), Expect(2) = 8.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1 / +2
Query: 127 RYR*PVMSYLSEHLQRYFFYF 189
RY P +S + H+ +FF+F
Sbjct: 27326 RYCTPSLSLHAAHVLSFFFFF 27388
Score = 19.4 bits (36), Expect(2) = 8.4
Identities = 5/18 (27%), Positives = 11/18 (60%)
Frame = +1 / +3
Query: 175 YFFYFFLQRDMHCMQQEL 228
+FF+FF + H +++
Sbjct: 27384 FFFFFFFFQPQHFKARDI 27437
>NCR_G_C2.336 Ncr_G_C2.336
Length = 27241
Score = 25.3 bits (49), Expect(2) = 9.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2 / +2
Query: 116 PISDRLIPTWRAQVQLSWFPDL 51
P + L+P R VQLSWF L
Sbjct: 5360 PSTLELLPQRRGGVQLSWFSRL 5425
Score = 18.9 bits (35), Expect(2) = 9.2
Identities = 8/24 (33%), Positives = 12/24 (49%)
Frame = -3 / +1
Query: 283 NTAVDTVLQYSERLLTMLITPAAY 212
N+ + L S R + TP+AY
Sbjct: 5257 NSPQNRQLTQSGRACSSYETPSAY 5328
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
0.318 0.135 0.401
Matrix: BLOSUM62
Number of Hits to DB: 27961846
Number of Sequences: 995
Number of extensions: 346876
Number of successful extensions: 21057
Number of sequences better than 10.0: 31
length of query: 108
length of database: 12,656,439
effective HSP length: 44
effective length of query: 63
effective length of database: 12,612,659
effective search space: 794597517
effective search space used: 794597517
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 51 (26.3 bits)