BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1611_A03_B0
5ZT.seq
(371 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.379 Ncr_G_C2.379 36 0.17
NCR_G_C2.583 Ncr_G_C2.583 34 0.69
NCR_G_C2.341 Ncr_G_C2.341 34 0.69
NCR_G_C2.246 Ncr_G_C2.246 34 0.69
NCR_G_C2.686 Ncr_G_C2.686 32 2.7
NCR_G_C2.681 Ncr_G_C2.681 32 2.7
NCR_G_C2.574 Ncr_G_C2.574 32 2.7
NCR_G_C2.550 Ncr_G_C2.550 32 2.7
NCR_G_C2.539 Ncr_G_C2.539 32 2.7
NCR_G_C2.523 Ncr_G_C2.523 32 2.7
NCR_G_C2.502 Ncr_G_C2.502 32 2.7
NCR_G_C2.301 Ncr_G_C2.301 32 2.7
>NCR_G_C2.379 Ncr_G_C2.379
Length = 245776
Score = 36.2 bits (18), Expect = 0.17
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 327 acagaaggaggcaaagaa 344
||||||||||||||||||
Sbjct: 75290 acagaaggaggcaaagaa 75307
>NCR_G_C2.583 Ncr_G_C2.583
Length = 64275
Score = 34.2 bits (17), Expect = 0.69
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 104 tcatcatgcctctgcca 120
|||||||||||||||||
Sbjct: 64068 tcatcatgcctctgcca 64052
>NCR_G_C2.341 Ncr_G_C2.341
Length = 89049
Score = 34.2 bits (17), Expect = 0.69
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 337 gcaaagaagaccatcgc 353
|||||||||||||||||
Sbjct: 87575 gcaaagaagaccatcgc 87591
>NCR_G_C2.246 Ncr_G_C2.246
Length = 86567
Score = 34.2 bits (17), Expect = 0.69
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 330 gaaggaggcaaagaaga 346
|||||||||||||||||
Sbjct: 35127 gaaggaggcaaagaaga 35111
>NCR_G_C2.686 Ncr_G_C2.686
Length = 41475
Score = 32.2 bits (16), Expect = 2.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 113 ctctgccagcatctac 128
||||||||||||||||
Sbjct: 2835 ctctgccagcatctac 2850
>NCR_G_C2.681 Ncr_G_C2.681
Length = 124507
Score = 32.2 bits (16), Expect = 2.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 27 ttgtcctttccatctc 42
||||||||||||||||
Sbjct: 78869 ttgtcctttccatctc 78884
>NCR_G_C2.574 Ncr_G_C2.574
Length = 180542
Score = 32.2 bits (16), Expect = 2.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 329 agaaggaggcaaagaa 344
||||||||||||||||
Sbjct: 26121 agaaggaggcaaagaa 26106
>NCR_G_C2.550 Ncr_G_C2.550
Length = 52027
Score = 32.2 bits (16), Expect = 2.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 330 gaaggaggcaaagaag 345
||||||||||||||||
Sbjct: 20387 gaaggaggcaaagaag 20402
>NCR_G_C2.539 Ncr_G_C2.539
Length = 95985
Score = 32.2 bits (16), Expect = 2.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 277 tgttgcgtcgagttca 292
||||||||||||||||
Sbjct: 12014 tgttgcgtcgagttca 12029
>NCR_G_C2.523 Ncr_G_C2.523
Length = 130581
Score = 32.2 bits (16), Expect = 2.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 28 tgtcctttccatctca 43
||||||||||||||||
Sbjct: 66423 tgtcctttccatctca 66408
>NCR_G_C2.502 Ncr_G_C2.502
Length = 86916
Score = 32.2 bits (16), Expect = 2.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 332 aggaggcaaagaagac 347
||||||||||||||||
Sbjct: 42878 aggaggcaaagaagac 42893
>NCR_G_C2.301 Ncr_G_C2.301
Length = 71471
Score = 32.2 bits (16), Expect = 2.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 331 aaggaggcaaagaaga 346
||||||||||||||||
Sbjct: 23000 aaggaggcaaagaaga 23015
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6062
Number of Sequences: 995
Number of extensions: 6062
Number of successful extensions: 42
Number of sequences better than 10.0: 12
length of query: 371
length of database: 37,969,317
effective HSP length: 16
effective length of query: 355
effective length of database: 37,953,397
effective search space: 13473455935
effective search space used: 13473455935
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)