BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1611_A05_B0
9ZT.seq
(432 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.206 Ncr_G_C2.206 36 0.20
NCR_G_C2.690 Ncr_G_C2.690 34 0.80
NCR_G_C2.224 Ncr_G_C2.224 34 0.80
NCR_G_C2.594 Ncr_G_C2.594 32 3.2
NCR_G_C2.416 Ncr_G_C2.416 32 3.2
NCR_G_C2.350 Ncr_G_C2.350 32 3.2
NCR_G_C2.238 Ncr_G_C2.238 32 3.2
NCR_G_C2.064 Ncr_G_C2.064 32 3.2
>NCR_G_C2.206 Ncr_G_C2.206
Length = 43396
Score = 36.2 bits (18), Expect = 0.20
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 8 agtttgtcatgactgaag 25
||||||||||||||||||
Sbjct: 26154 agtttgtcatgactgaag 26171
>NCR_G_C2.690 Ncr_G_C2.690
Length = 112273
Score = 34.2 bits (17), Expect = 0.80
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 43 ggcgctgtggttggcgg 59
|||||||||||||||||
Sbjct: 16548 ggcgctgtggttggcgg 16564
>NCR_G_C2.224 Ncr_G_C2.224
Length = 69257
Score = 34.2 bits (17), Expect = 0.80
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 287 agtgaaaggacaacgac 303
|||||||||||||||||
Sbjct: 58736 agtgaaaggacaacgac 58720
>NCR_G_C2.594 Ncr_G_C2.594
Length = 22956
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 5 gtcagtttgtcatgac 20
||||||||||||||||
Sbjct: 5687 gtcagtttgtcatgac 5702
>NCR_G_C2.416 Ncr_G_C2.416
Length = 188447
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 222 cgtgggtgaagcatgg 237
||||||||||||||||
Sbjct: 41548 cgtgggtgaagcatgg 41563
>NCR_G_C2.350 Ncr_G_C2.350
Length = 51497
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 34 caaaaatcaggcgctg 49
||||||||||||||||
Sbjct: 35301 caaaaatcaggcgctg 35316
>NCR_G_C2.238 Ncr_G_C2.238
Length = 254242
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 242 tcgatgactgctttag 257
||||||||||||||||
Sbjct: 142970 tcgatgactgctttag 142985
>NCR_G_C2.064 Ncr_G_C2.064
Length = 47747
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 174 tctgtgcaacaaacga 189
||||||||||||||||
Sbjct: 44797 tctgtgcaacaaacga 44812
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7872
Number of Sequences: 995
Number of extensions: 7872
Number of successful extensions: 8
Number of sequences better than 10.0: 8
length of query: 432
length of database: 37,969,317
effective HSP length: 17
effective length of query: 415
effective length of database: 37,952,402
effective search space: 15750246830
effective search space used: 15750246830
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)