BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1611_B04_D0
7ZT.seq
(397 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.585 Ncr_G_C2.585 34 0.73
NCR_G_C2.320 Ncr_G_C2.320 34 0.73
NCR_G_C2.640 Ncr_G_C2.640 32 2.9
NCR_G_C2.621 Ncr_G_C2.621 32 2.9
NCR_G_C2.561 Ncr_G_C2.561 32 2.9
NCR_G_C2.493 Ncr_G_C2.493 32 2.9
NCR_G_C2.440 Ncr_G_C2.440 32 2.9
NCR_G_C2.430 Ncr_G_C2.430 32 2.9
NCR_G_C2.253 Ncr_G_C2.253 32 2.9
NCR_G_C2.068 Ncr_G_C2.068 32 2.9
NCR_G_C2.044 Ncr_G_C2.044 32 2.9
NCR_G_C2.027 Ncr_G_C2.027 32 2.9
>NCR_G_C2.585 Ncr_G_C2.585
Length = 245975
Score = 34.2 bits (17), Expect = 0.73
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 240 gtggtggtgaagctgcc 256
|||||||||||||||||
Sbjct: 120502 gtggtggtgaagctgcc 120518
>NCR_G_C2.320 Ncr_G_C2.320
Length = 80443
Score = 34.2 bits (17), Expect = 0.73
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 46 gaggactctgactttga 62
|||||||||||||||||
Sbjct: 20186 gaggactctgactttga 20202
>NCR_G_C2.640 Ncr_G_C2.640
Length = 147149
Score = 32.2 bits (16), Expect = 2.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 350 ccagggtgtggtggac 365
||||||||||||||||
Sbjct: 108207 ccagggtgtggtggac 108222
>NCR_G_C2.621 Ncr_G_C2.621
Length = 42293
Score = 32.2 bits (16), Expect = 2.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 353 gggtgtggtggactgg 368
||||||||||||||||
Sbjct: 38840 gggtgtggtggactgg 38855
>NCR_G_C2.561 Ncr_G_C2.561
Length = 43969
Score = 32.2 bits (16), Expect = 2.9
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 72 gaaaacaaccgaggga 87
||||||||||||||||
Sbjct: 33116 gaaaacaaccgaggga 33101
>NCR_G_C2.493 Ncr_G_C2.493
Length = 19706
Score = 32.2 bits (16), Expect = 2.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 48 ggactctgactttgaa 63
||||||||||||||||
Sbjct: 14093 ggactctgactttgaa 14108
>NCR_G_C2.440 Ncr_G_C2.440
Length = 156136
Score = 32.2 bits (16), Expect = 2.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 241 tggtggtgaagctgcc 256
||||||||||||||||
Sbjct: 41254 tggtggtgaagctgcc 41269
>NCR_G_C2.430 Ncr_G_C2.430
Length = 226714
Score = 32.2 bits (16), Expect = 2.9
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 288 actggctgaatgaact 303
||||||||||||||||
Sbjct: 187878 actggctgaatgaact 187863
>NCR_G_C2.253 Ncr_G_C2.253
Length = 110253
Score = 32.2 bits (16), Expect = 2.9
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 136 gcgccgagaaggaggtggtc 155
|||| |||||||||||||||
Sbjct: 64391 gcgctgagaaggaggtggtc 64372
>NCR_G_C2.068 Ncr_G_C2.068
Length = 163893
Score = 32.2 bits (16), Expect = 2.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 352 agggtgtggtggactg 367
||||||||||||||||
Sbjct: 85679 agggtgtggtggactg 85694
>NCR_G_C2.044 Ncr_G_C2.044
Length = 101344
Score = 32.2 bits (16), Expect = 2.9
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 376 ctgggccgttgggggg 391
||||||||||||||||
Sbjct: 3292 ctgggccgttgggggg 3277
>NCR_G_C2.027 Ncr_G_C2.027
Length = 84885
Score = 32.2 bits (16), Expect = 2.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 272 aaacgcttgacaagct 287
||||||||||||||||
Sbjct: 22907 aaacgcttgacaagct 22922
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7778
Number of Sequences: 995
Number of extensions: 7778
Number of successful extensions: 41
Number of sequences better than 10.0: 12
length of query: 397
length of database: 37,969,317
effective HSP length: 17
effective length of query: 380
effective length of database: 37,952,402
effective search space: 14421912760
effective search space used: 14421912760
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)