BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1611_G03_N0
5ZT.seq
(458 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.642 Ncr_G_C2.642 40 0.014
NCR_G_C2.640 Ncr_G_C2.640 36 0.22
NCR_G_C2.625 Ncr_G_C2.625 34 0.85
NCR_G_C2.538 Ncr_G_C2.538 34 0.85
NCR_G_C2.508 Ncr_G_C2.508 34 0.85
NCR_G_C2.502 Ncr_G_C2.502 34 0.85
NCR_G_C2.430 Ncr_G_C2.430 34 0.85
NCR_G_C2.404 Ncr_G_C2.404 34 0.85
NCR_G_C2.690 Ncr_G_C2.690 32 3.4
NCR_G_C2.585 Ncr_G_C2.585 32 3.4
NCR_G_C2.568 Ncr_G_C2.568 32 3.4
NCR_G_C2.564 Ncr_G_C2.564 32 3.4
NCR_G_C2.397 Ncr_G_C2.397 32 3.4
NCR_G_C2.349 Ncr_G_C2.349 32 3.4
NCR_G_C2.346 Ncr_G_C2.346 32 3.4
NCR_G_C2.266 Ncr_G_C2.266 32 3.4
NCR_G_C2.230 Ncr_G_C2.230 32 3.4
NCR_G_C2.218 Ncr_G_C2.218 32 3.4
NCR_G_C2.194 Ncr_G_C2.194 32 3.4
NCR_G_C2.189 Ncr_G_C2.189 32 3.4
NCR_G_C2.082 Ncr_G_C2.082 32 3.4
NCR_G_C2.068 Ncr_G_C2.068 32 3.4
>NCR_G_C2.642 Ncr_G_C2.642
Length = 116778
Score = 40.1 bits (20), Expect = 0.014
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 216 ccctccgcggcggcagcggt 235
||||||||||||||||||||
Sbjct: 56514 ccctccgcggcggcagcggt 56533
>NCR_G_C2.640 Ncr_G_C2.640
Length = 147149
Score = 36.2 bits (18), Expect = 0.22
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 32 agcatcagcgatattccc 49
||||||||||||||||||
Sbjct: 86560 agcatcagcgatattccc 86577
>NCR_G_C2.625 Ncr_G_C2.625
Length = 30538
Score = 34.2 bits (17), Expect = 0.85
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 440 ttggccgcggagaatgg 456
|||||||||||||||||
Sbjct: 29072 ttggccgcggagaatgg 29088
>NCR_G_C2.538 Ncr_G_C2.538
Length = 60272
Score = 34.2 bits (17), Expect = 0.85
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 216 ccctccgcggcggcagcggtg 236
|||||||||||||| ||||||
Sbjct: 10542 ccctccgcggcggcggcggtg 10522
>NCR_G_C2.508 Ncr_G_C2.508
Length = 105197
Score = 34.2 bits (17), Expect = 0.85
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 366 cagtcggtccaatcttc 382
|||||||||||||||||
Sbjct: 6453 cagtcggtccaatcttc 6469
>NCR_G_C2.502 Ncr_G_C2.502
Length = 86916
Score = 34.2 bits (17), Expect = 0.85
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 273 tggtcaaggagtctgga 289
|||||||||||||||||
Sbjct: 39231 tggtcaaggagtctgga 39247
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 232 cggtgtcgacggcgcc 247
||||||||||||||||
Sbjct: 72271 cggtgtcgacggcgcc 72256
>NCR_G_C2.430 Ncr_G_C2.430
Length = 226714
Score = 34.2 bits (17), Expect = 0.85
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 228 gcagcggtgtcgacggc 244
|||||||||||||||||
Sbjct: 85481 gcagcggtgtcgacggc 85497
>NCR_G_C2.404 Ncr_G_C2.404
Length = 264766
Score = 34.2 bits (17), Expect = 0.85
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 210 acaagtccctccgcggc 226
|||||||||||||||||
Sbjct: 144409 acaagtccctccgcggc 144393
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 49 cagcctcactcagctc 64
||||||||||||||||
Sbjct: 64400 cagcctcactcagctc 64415
>NCR_G_C2.690 Ncr_G_C2.690
Length = 112273
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 195 tcgtcaacgctgccaa 210
||||||||||||||||
Sbjct: 72714 tcgtcaacgctgccaa 72729
>NCR_G_C2.585 Ncr_G_C2.585
Length = 245975
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 403 cgagaagctcgccatg 418
||||||||||||||||
Sbjct: 18779 cgagaagctcgccatg 18764
>NCR_G_C2.568 Ncr_G_C2.568
Length = 267169
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 45 ttcccagcctcactca 60
||||||||||||||||
Sbjct: 87367 ttcccagcctcactca 87352
>NCR_G_C2.564 Ncr_G_C2.564
Length = 150940
Score = 32.2 bits (16), Expect = 3.4
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 356 gtcatccacacagtcggtcc 375
||||||||||| ||||||||
Sbjct: 84245 gtcatccacacggtcggtcc 84226
Score = 32.2 bits (16), Expect = 3.4
Identities = 46/56 (82%)
Strand = Plus / Minus
Query: 164 ggagacatcaccgaactccgtatcgacgccatcgtcaacgctgccaacaagtccct 219
|||||||||||| |||| | |||| ||||| |||||||| || ||||| |||||
Sbjct: 84437 ggagacatcaccaaacttcaggtcgatgccattgtcaacgccgcaaacaactccct 84382
>NCR_G_C2.397 Ncr_G_C2.397
Length = 35425
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 331 gggatacaaacttcct 346
||||||||||||||||
Sbjct: 17616 gggatacaaacttcct 17601
>NCR_G_C2.349 Ncr_G_C2.349
Length = 77580
Score = 32.2 bits (16), Expect = 3.4
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 222 gcggcggcagcggtgtcgacggcg 245
||||||||||||| | ||||||||
Sbjct: 29272 gcggcggcagcggcgacgacggcg 29295
>NCR_G_C2.346 Ncr_G_C2.346
Length = 31295
Score = 32.2 bits (16), Expect = 3.4
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 255 gcgctgcaggacctgacctg 274
||||||||||||| ||||||
Sbjct: 18028 gcgctgcaggaccagacctg 18009
>NCR_G_C2.266 Ncr_G_C2.266
Length = 45896
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 310 cggtgatgctgtcatc 325
||||||||||||||||
Sbjct: 9054 cggtgatgctgtcatc 9039
>NCR_G_C2.230 Ncr_G_C2.230
Length = 223934
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 24 gcatcagaagcatcag 39
||||||||||||||||
Sbjct: 223677 gcatcagaagcatcag 223692
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 20 atgggcatcagaagca 35
||||||||||||||||
Sbjct: 97617 atgggcatcagaagca 97602
>NCR_G_C2.218 Ncr_G_C2.218
Length = 129490
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 403 cgagaagctcgccatg 418
||||||||||||||||
Sbjct: 91557 cgagaagctcgccatg 91542
>NCR_G_C2.194 Ncr_G_C2.194
Length = 74501
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 25 catcagaagcatcagc 40
||||||||||||||||
Sbjct: 3043 catcagaagcatcagc 3058
>NCR_G_C2.189 Ncr_G_C2.189
Length = 127770
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 190 cgccatcgtcaacgct 205
||||||||||||||||
Sbjct: 70470 cgccatcgtcaacgct 70485
>NCR_G_C2.082 Ncr_G_C2.082
Length = 85760
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 220 ccgcggcggcagcggt 235
||||||||||||||||
Sbjct: 40671 ccgcggcggcagcggt 40686
>NCR_G_C2.068 Ncr_G_C2.068
Length = 163893
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 206 gccaacaagtccctcc 221
||||||||||||||||
Sbjct: 55193 gccaacaagtccctcc 55208
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8800
Number of Sequences: 995
Number of extensions: 8800
Number of successful extensions: 26
Number of sequences better than 10.0: 22
length of query: 458
length of database: 37,969,317
effective HSP length: 17
effective length of query: 441
effective length of database: 37,952,402
effective search space: 16737009282
effective search space used: 16737009282
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)