BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1611_H11_P2
1ZT.seq
(499 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.493 Ncr_G_C2.493 34 0.93
NCR_G_C2.208 Ncr_G_C2.208 34 0.93
NCR_G_C2.712 Ncr_G_C2.712 32 3.7
NCR_G_C2.657 Ncr_G_C2.657 32 3.7
NCR_G_C2.640 Ncr_G_C2.640 32 3.7
NCR_G_C2.539 Ncr_G_C2.539 32 3.7
NCR_G_C2.403 Ncr_G_C2.403 32 3.7
NCR_G_C2.341 Ncr_G_C2.341 32 3.7
NCR_G_C2.214 Ncr_G_C2.214 32 3.7
NCR_G_C2.109 Ncr_G_C2.109 32 3.7
NCR_G_C2.081 Ncr_G_C2.081 32 3.7
NCR_G_C2.023 Ncr_G_C2.023 32 3.7
>NCR_G_C2.493 Ncr_G_C2.493
Length = 19706
Score = 34.2 bits (17), Expect = 0.93
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 26 aatggcgttggtgttgg 42
|||||||||||||||||
Sbjct: 6048 aatggcgttggtgttgg 6032
>NCR_G_C2.208 Ncr_G_C2.208
Length = 202230
Score = 34.2 bits (17), Expect = 0.93
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 62 acattggttggatgttc 78
|||||||||||||||||
Sbjct: 195756 acattggttggatgttc 195772
>NCR_G_C2.712 Ncr_G_C2.712
Length = 37287
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 81 gacggcgaagaagatg 96
||||||||||||||||
Sbjct: 21392 gacggcgaagaagatg 21377
>NCR_G_C2.657 Ncr_G_C2.657
Length = 44760
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 77 tcttgacggcgaagaa 92
||||||||||||||||
Sbjct: 38576 tcttgacggcgaagaa 38561
>NCR_G_C2.640 Ncr_G_C2.640
Length = 147149
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 221 aatgttcgatccctcc 236
||||||||||||||||
Sbjct: 34376 aatgttcgatccctcc 34361
>NCR_G_C2.539 Ncr_G_C2.539
Length = 95985
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 81 gacggcgaagaagatg 96
||||||||||||||||
Sbjct: 86819 gacggcgaagaagatg 86804
>NCR_G_C2.403 Ncr_G_C2.403
Length = 165442
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 389 caacatggaattccaa 404
||||||||||||||||
Sbjct: 61228 caacatggaattccaa 61243
>NCR_G_C2.341 Ncr_G_C2.341
Length = 89049
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 154 cagttctcaaagacta 169
||||||||||||||||
Sbjct: 6562 cagttctcaaagacta 6577
>NCR_G_C2.214 Ncr_G_C2.214
Length = 116813
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 81 gacggcgaagaagatg 96
||||||||||||||||
Sbjct: 111598 gacggcgaagaagatg 111613
>NCR_G_C2.109 Ncr_G_C2.109
Length = 10812
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 303 tgccaagtcccaatct 318
||||||||||||||||
Sbjct: 2706 tgccaagtcccaatct 2691
>NCR_G_C2.081 Ncr_G_C2.081
Length = 48897
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 250 cgaatcatcgatcagc 265
||||||||||||||||
Sbjct: 4400 cgaatcatcgatcagc 4385
>NCR_G_C2.023 Ncr_G_C2.023
Length = 117328
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1 caactcgagcgtcaac 16
||||||||||||||||
Sbjct: 81615 caactcgagcgtcaac 81630
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9050
Number of Sequences: 995
Number of extensions: 9050
Number of successful extensions: 12
Number of sequences better than 10.0: 12
length of query: 499
length of database: 37,969,317
effective HSP length: 17
effective length of query: 482
effective length of database: 37,952,402
effective search space: 18293057764
effective search space used: 18293057764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)