BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1612_B03_D0
6ZT.seq
(577 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.497 Ncr_G_C2.497 42 0.004
NCR_G_C2.711 Ncr_G_C2.711 36 0.27
NCR_G_C2.698 Ncr_G_C2.698 34 1.1
NCR_G_C2.041 Ncr_G_C2.041 34 1.1
NCR_G_C2.628 Ncr_G_C2.628 32 4.3
NCR_G_C2.568 Ncr_G_C2.568 32 4.3
NCR_G_C2.441 Ncr_G_C2.441 32 4.3
NCR_G_C2.416 Ncr_G_C2.416 32 4.3
NCR_G_C2.340 Ncr_G_C2.340 32 4.3
NCR_G_C2.256 Ncr_G_C2.256 32 4.3
NCR_G_C2.072 Ncr_G_C2.072 32 4.3
NCR_G_C2.018 Ncr_G_C2.018 32 4.3
>NCR_G_C2.497 Ncr_G_C2.497
Length = 192966
Score = 42.1 bits (21), Expect = 0.004
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 34 gagatggctgtggagaacttgtctgaaatgtttgagaagcc 74
|||||||| || |||||| |||| || ||||||||||||||
Sbjct: 24800 gagatggcggtagagaacctgtccgagatgtttgagaagcc 24760
Score = 34.2 bits (17), Expect = 1.1
Identities = 26/29 (89%)
Strand = Plus / Minus
Query: 115 atggataaaacgtcatactgcaacaagcg 143
||||| || ||||| ||||||||||||||
Sbjct: 24719 atggacaagacgtcgtactgcaacaagcg 24691
>NCR_G_C2.711 Ncr_G_C2.711
Length = 50701
Score = 36.2 bits (18), Expect = 0.27
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 348 gagttgaactcccagtcc 365
||||||||||||||||||
Sbjct: 20223 gagttgaactcccagtcc 20206
>NCR_G_C2.698 Ncr_G_C2.698
Length = 41041
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 240 tcatcgtcgctgaagta 256
|||||||||||||||||
Sbjct: 33544 tcatcgtcgctgaagta 33560
Score = 32.2 bits (16), Expect = 4.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 392 gatgattggccaatca 407
||||||||||||||||
Sbjct: 17712 gatgattggccaatca 17727
>NCR_G_C2.041 Ncr_G_C2.041
Length = 93302
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 342 agctatgagttgaactc 358
|||||||||||||||||
Sbjct: 91571 agctatgagttgaactc 91555
>NCR_G_C2.628 Ncr_G_C2.628
Length = 55709
Score = 32.2 bits (16), Expect = 4.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 311 acagcattcattgtcg 326
||||||||||||||||
Sbjct: 29609 acagcattcattgtcg 29624
>NCR_G_C2.568 Ncr_G_C2.568
Length = 267169
Score = 32.2 bits (16), Expect = 4.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 62 tgtttgagaagcccat 77
||||||||||||||||
Sbjct: 209630 tgtttgagaagcccat 209645
>NCR_G_C2.441 Ncr_G_C2.441
Length = 223615
Score = 32.2 bits (16), Expect = 4.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 353 gaactcccagtccttg 368
||||||||||||||||
Sbjct: 50972 gaactcccagtccttg 50957
>NCR_G_C2.416 Ncr_G_C2.416
Length = 188447
Score = 32.2 bits (16), Expect = 4.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 34 gagatggctgtggaga 49
||||||||||||||||
Sbjct: 86401 gagatggctgtggaga 86416
>NCR_G_C2.340 Ncr_G_C2.340
Length = 74466
Score = 32.2 bits (16), Expect = 4.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 182 caaatggcgaatggaa 197
||||||||||||||||
Sbjct: 56436 caaatggcgaatggaa 56421
>NCR_G_C2.256 Ncr_G_C2.256
Length = 141304
Score = 32.2 bits (16), Expect = 4.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 378 cagcgtgcggccaaga 393
||||||||||||||||
Sbjct: 50453 cagcgtgcggccaaga 50468
>NCR_G_C2.072 Ncr_G_C2.072
Length = 33319
Score = 32.2 bits (16), Expect = 4.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 218 ctgccactacctctgc 233
||||||||||||||||
Sbjct: 19380 ctgccactacctctgc 19365
>NCR_G_C2.018 Ncr_G_C2.018
Length = 27611
Score = 32.2 bits (16), Expect = 4.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 26 aagatcttgagatggc 41
||||||||||||||||
Sbjct: 12360 aagatcttgagatggc 12345
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9129
Number of Sequences: 995
Number of extensions: 9129
Number of successful extensions: 14
Number of sequences better than 10.0: 12
length of query: 577
length of database: 37,969,317
effective HSP length: 17
effective length of query: 560
effective length of database: 37,952,402
effective search space: 21253345120
effective search space used: 21253345120
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)