BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1612_B08_D1
6ZT.seq
(477 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.600 Ncr_G_C2.600 34 0.89
NCR_G_C2.585 Ncr_G_C2.585 34 0.89
NCR_G_C2.202 Ncr_G_C2.202 34 0.89
NCR_G_C2.489 Ncr_G_C2.489 32 3.5
NCR_G_C2.445 Ncr_G_C2.445 32 3.5
NCR_G_C2.216 Ncr_G_C2.216 32 3.5
NCR_G_C2.155 Ncr_G_C2.155 32 3.5
NCR_G_C2.070 Ncr_G_C2.070 32 3.5
>NCR_G_C2.600 Ncr_G_C2.600
Length = 61362
Score = 34.2 bits (17), Expect = 0.89
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 156 actactcgagccagcat 172
|||||||||||||||||
Sbjct: 19245 actactcgagccagcat 19229
>NCR_G_C2.585 Ncr_G_C2.585
Length = 245975
Score = 34.2 bits (17), Expect = 0.89
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 64 gggccggaaacctcgac 80
|||||||||||||||||
Sbjct: 25177 gggccggaaacctcgac 25161
>NCR_G_C2.202 Ncr_G_C2.202
Length = 148112
Score = 34.2 bits (17), Expect = 0.89
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 51 tacgccgagtactgggc 67
|||||||||||||||||
Sbjct: 116269 tacgccgagtactgggc 116285
>NCR_G_C2.489 Ncr_G_C2.489
Length = 72191
Score = 32.2 bits (16), Expect = 3.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 267 tcaatggacagggctt 282
||||||||||||||||
Sbjct: 9008 tcaatggacagggctt 8993
>NCR_G_C2.445 Ncr_G_C2.445
Length = 167464
Score = 32.2 bits (16), Expect = 3.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 447 ctggtatcataaaatg 462
||||||||||||||||
Sbjct: 167219 ctggtatcataaaatg 167204
>NCR_G_C2.216 Ncr_G_C2.216
Length = 48088
Score = 32.2 bits (16), Expect = 3.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 59 gtactgggccggaaac 74
||||||||||||||||
Sbjct: 1316 gtactgggccggaaac 1331
>NCR_G_C2.155 Ncr_G_C2.155
Length = 89720
Score = 32.2 bits (16), Expect = 3.5
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 358 caatgggatattattggcaa 377
|||||||||||| |||||||
Sbjct: 89330 caatgggatatttttggcaa 89311
>NCR_G_C2.070 Ncr_G_C2.070
Length = 89843
Score = 32.2 bits (16), Expect = 3.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 275 cagggcttttctttcg 290
||||||||||||||||
Sbjct: 70769 cagggcttttctttcg 70754
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7061
Number of Sequences: 995
Number of extensions: 7061
Number of successful extensions: 8
Number of sequences better than 10.0: 8
length of query: 477
length of database: 37,969,317
effective HSP length: 17
effective length of query: 460
effective length of database: 37,952,402
effective search space: 17458104920
effective search space used: 17458104920
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)