BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1612_D10_H2
0ZT.seq
(355 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.300 Ncr_G_C2.300 36 0.17
NCR_G_C2.380 Ncr_G_C2.380 32 2.6
NCR_G_C2.341 Ncr_G_C2.341 32 2.6
NCR_G_C2.327 Ncr_G_C2.327 32 2.6
NCR_G_C2.253 Ncr_G_C2.253 32 2.6
NCR_G_C2.225 Ncr_G_C2.225 32 2.6
NCR_G_C2.125 Ncr_G_C2.125 32 2.6
NCR_G_C2.022_2 Ncr_G_C2.022_2.seq Continuation (2 of 6) of Ncr_G... 32 2.6
>NCR_G_C2.300 Ncr_G_C2.300
Length = 27689
Score = 36.2 bits (18), Expect = 0.17
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 205 caacaccaagcccgctcatttc 226
|||||||||| |||||||||||
Sbjct: 3095 caacaccaagaccgctcatttc 3116
>NCR_G_C2.380 Ncr_G_C2.380
Length = 179343
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 120 cacaatactgcaacct 135
||||||||||||||||
Sbjct: 156196 cacaatactgcaacct 156211
>NCR_G_C2.341 Ncr_G_C2.341
Length = 89049
Score = 32.2 bits (16), Expect = 2.6
Identities = 25/28 (89%)
Strand = Plus / Plus
Query: 194 aacagcatcgtcaacaccaagcccgctc 221
|||||||||||||| | | |||||||||
Sbjct: 7389 aacagcatcgtcaatagcgagcccgctc 7416
>NCR_G_C2.327 Ncr_G_C2.327
Length = 167595
Score = 32.2 bits (16), Expect = 2.6
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 225 tcctcgacggtctggaccgt 244
|||||| |||||||||||||
Sbjct: 66840 tcctcggcggtctggaccgt 66859
>NCR_G_C2.253 Ncr_G_C2.253
Length = 110253
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 319 tgaggttatgttgctg 334
||||||||||||||||
Sbjct: 30038 tgaggttatgttgctg 30023
>NCR_G_C2.225 Ncr_G_C2.225
Length = 107875
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 172 tgtatgttcctggtgg 187
||||||||||||||||
Sbjct: 95944 tgtatgttcctggtgg 95959
>NCR_G_C2.125 Ncr_G_C2.125
Length = 138790
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 121 acaatactgcaacctg 136
||||||||||||||||
Sbjct: 93251 acaatactgcaacctg 93236
>NCR_G_C2.022_2 Ncr_G_C2.022_2.seq Continuation (2 of 6) of Ncr_G_C2.022
from base 100001
Length = 110000
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 204 tcaacaccaagcccgc 219
||||||||||||||||
Sbjct: 54431 tcaacaccaagcccgc 54446
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6470
Number of Sequences: 995
Number of extensions: 6470
Number of successful extensions: 29
Number of sequences better than 10.0: 8
length of query: 355
length of database: 37,969,317
effective HSP length: 16
effective length of query: 339
effective length of database: 37,953,397
effective search space: 12866201583
effective search space used: 12866201583
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)