BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1612_F04_L0
8ZT.seq
(203 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.418 Ncr_G_C2.418 34 0.36
NCR_G_C2.642 Ncr_G_C2.642 32 1.4
NCR_G_C2.445 Ncr_G_C2.445 32 1.4
NCR_G_C2.132 Ncr_G_C2.132 32 1.4
NCR_G_C2.054 Ncr_G_C2.054 32 1.4
NCR_G_C2.568 Ncr_G_C2.568 30 5.6
NCR_G_C2.458 Ncr_G_C2.458 30 5.6
NCR_G_C2.298 Ncr_G_C2.298 30 5.6
NCR_G_C2.265 Ncr_G_C2.265 30 5.6
NCR_G_C2.233 Ncr_G_C2.233 30 5.6
NCR_G_C2.106 Ncr_G_C2.106 30 5.6
NCR_G_C2.077 Ncr_G_C2.077 30 5.6
NCR_G_C2.076 Ncr_G_C2.076 30 5.6
NCR_G_C2.042_4 Ncr_G_C2.042_4.seq Continuation (4 of 6) of Ncr_G... 30 5.6
NCR_G_C2.013 Ncr_G_C2.013 30 5.6
>NCR_G_C2.418 Ncr_G_C2.418
Length = 47903
Score = 34.2 bits (17), Expect = 0.36
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 123 tgctggctttggctatg 139
|||||||||||||||||
Sbjct: 5468 tgctggctttggctatg 5452
>NCR_G_C2.642 Ncr_G_C2.642
Length = 116778
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 163 tggggccttcgatggg 178
||||||||||||||||
Sbjct: 10481 tggggccttcgatggg 10496
>NCR_G_C2.445 Ncr_G_C2.445
Length = 167464
Score = 32.2 bits (16), Expect = 1.4
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 84 tctcttgggccacctttgtg 103
|||| |||||||||||||||
Sbjct: 76680 tctcctgggccacctttgtg 76699
>NCR_G_C2.132 Ncr_G_C2.132
Length = 33196
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 103 ggcatcgccattggat 118
||||||||||||||||
Sbjct: 8662 ggcatcgccattggat 8677
>NCR_G_C2.054 Ncr_G_C2.054
Length = 33329
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 121 gttgctggctttggct 136
||||||||||||||||
Sbjct: 20705 gttgctggctttggct 20720
>NCR_G_C2.568 Ncr_G_C2.568
Length = 267169
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 51 tttggttgtagccgc 65
|||||||||||||||
Sbjct: 4980 tttggttgtagccgc 4966
>NCR_G_C2.458 Ncr_G_C2.458
Length = 32375
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 121 gttgctggctttggc 135
|||||||||||||||
Sbjct: 27784 gttgctggctttggc 27770
>NCR_G_C2.298 Ncr_G_C2.298
Length = 253576
Score = 30.2 bits (15), Expect = 5.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 7 ggctccgtcaatatcccaa 25
||||| |||||||||||||
Sbjct: 199950 ggctctgtcaatatcccaa 199968
>NCR_G_C2.265 Ncr_G_C2.265
Length = 91342
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 162 ttggggccttcgatg 176
|||||||||||||||
Sbjct: 76174 ttggggccttcgatg 76188
>NCR_G_C2.233 Ncr_G_C2.233
Length = 15106
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 120 tgttgctggctttgg 134
|||||||||||||||
Sbjct: 5750 tgttgctggctttgg 5764
>NCR_G_C2.106 Ncr_G_C2.106
Length = 177512
Score = 30.2 bits (15), Expect = 5.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 169 cttcgatgggttgagaacc 187
|||| ||||||||||||||
Sbjct: 83524 cttctatgggttgagaacc 83506
>NCR_G_C2.077 Ncr_G_C2.077
Length = 64403
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 13 gtcaatatcccaaca 27
|||||||||||||||
Sbjct: 20769 gtcaatatcccaaca 20783
>NCR_G_C2.076 Ncr_G_C2.076
Length = 241344
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 127 ggctttggctatgcc 141
|||||||||||||||
Sbjct: 48676 ggctttggctatgcc 48690
>NCR_G_C2.042_4 Ncr_G_C2.042_4.seq Continuation (4 of 6) of Ncr_G_C2.042
from base 300001
Length = 110000
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 114 tggatatgttgctgg 128
|||||||||||||||
Sbjct: 59960 tggatatgttgctgg 59946
>NCR_G_C2.013 Ncr_G_C2.013
Length = 121415
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 102 tggcatcgccattgg 116
|||||||||||||||
Sbjct: 92517 tggcatcgccattgg 92503
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3352
Number of Sequences: 995
Number of extensions: 3352
Number of successful extensions: 15
Number of sequences better than 10.0: 15
length of query: 203
length of database: 37,969,317
effective HSP length: 16
effective length of query: 187
effective length of database: 37,953,397
effective search space: 7097285239
effective search space used: 7097285239
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)