BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_NCR/FgrNCT3P_1613_A01_A0
1Z5T.seq
(653 letters)
Database: /phillip/Ncr/Ncr_G
995 sequences; 37,969,317 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCR_G_C2.042_5 Ncr_G_C2.042_5.seq Continuation (5 of 6) of Ncr_G... 52 5e-06
NCR_G_C2.701 Ncr_G_C2.701 36 0.31
NCR_G_C2.051 Ncr_G_C2.051 34 1.2
NCR_G_C2.023 Ncr_G_C2.023 34 1.2
NCR_G_C2.013 Ncr_G_C2.013 34 1.2
NCR_G_C2.688 Ncr_G_C2.688 32 4.9
NCR_G_C2.687 Ncr_G_C2.687 32 4.9
NCR_G_C2.615 Ncr_G_C2.615 32 4.9
NCR_G_C2.368 Ncr_G_C2.368 32 4.9
NCR_G_C2.259 Ncr_G_C2.259 32 4.9
NCR_G_C2.208 Ncr_G_C2.208 32 4.9
NCR_G_C2.067 Ncr_G_C2.067 32 4.9
NCR_G_C2.055 Ncr_G_C2.055 32 4.9
NCR_G_C2.010 Ncr_G_C2.010 32 4.9
>NCR_G_C2.042_5 Ncr_G_C2.042_5.seq Continuation (5 of 6) of Ncr_G_C2.042
from base 400001
Length = 110000
Score = 52.0 bits (26), Expect = 5e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 602 gagcacgaccaggatgacttctggcaggctccggcccacttc 643
|||||||||||||| | |||||||||||| || |||||||||
Sbjct: 23817 gagcacgaccaggacggcttctggcaggcgcccgcccacttc 23776
>NCR_G_C2.701 Ncr_G_C2.701
Length = 74456
Score = 36.2 bits (18), Expect = 0.31
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 22 tcacttcgtggccaagca 39
||||||||||||||||||
Sbjct: 31959 tcacttcgtggccaagca 31976
>NCR_G_C2.051 Ncr_G_C2.051
Length = 40154
Score = 34.2 bits (17), Expect = 1.2
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 360 tgcaaatcatcgagtggtcga 380
|||||| ||||||||||||||
Sbjct: 24241 tgcaaaccatcgagtggtcga 24261
>NCR_G_C2.023 Ncr_G_C2.023
Length = 117328
Score = 34.2 bits (17), Expect = 1.2
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 27 tcgtggccaagcagctcgagg 47
||||| |||||||||||||||
Sbjct: 102656 tcgtgaccaagcagctcgagg 102676
>NCR_G_C2.013 Ncr_G_C2.013
Length = 121415
Score = 34.2 bits (17), Expect = 1.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 49 aaaggagattttctcgg 65
|||||||||||||||||
Sbjct: 4311 aaaggagattttctcgg 4295
Score = 32.2 bits (16), Expect = 4.9
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 230 caggagcgtgtcaagggcga 249
||||||||||| ||||||||
Sbjct: 37118 caggagcgtgtgaagggcga 37099
>NCR_G_C2.688 Ncr_G_C2.688
Length = 28516
Score = 32.2 bits (16), Expect = 4.9
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 251 tttggcgagcaggatc 266
||||||||||||||||
Sbjct: 5996 tttggcgagcaggatc 5981
>NCR_G_C2.687 Ncr_G_C2.687
Length = 148317
Score = 32.2 bits (16), Expect = 4.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 229 acaggagcgtgtcaag 244
||||||||||||||||
Sbjct: 2970 acaggagcgtgtcaag 2985
>NCR_G_C2.615 Ncr_G_C2.615
Length = 130067
Score = 32.2 bits (16), Expect = 4.9
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 307 ggcattgaagatgatt 322
||||||||||||||||
Sbjct: 121116 ggcattgaagatgatt 121101
>NCR_G_C2.368 Ncr_G_C2.368
Length = 44122
Score = 32.2 bits (16), Expect = 4.9
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 108 ctgccgttgctgaatttctc 127
|||||||||||||| |||||
Sbjct: 24147 ctgccgttgctgaaattctc 24128
>NCR_G_C2.259 Ncr_G_C2.259
Length = 185660
Score = 32.2 bits (16), Expect = 4.9
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 86 agtgccaagagcgctg 101
||||||||||||||||
Sbjct: 23362 agtgccaagagcgctg 23347
>NCR_G_C2.208 Ncr_G_C2.208
Length = 202230
Score = 32.2 bits (16), Expect = 4.9
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 110 gccgttgctgaatttc 125
||||||||||||||||
Sbjct: 92035 gccgttgctgaatttc 92020
>NCR_G_C2.067 Ncr_G_C2.067
Length = 49858
Score = 32.2 bits (16), Expect = 4.9
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 134 ctgggcttggctattg 149
||||||||||||||||
Sbjct: 1063 ctgggcttggctattg 1048
>NCR_G_C2.055 Ncr_G_C2.055
Length = 79879
Score = 32.2 bits (16), Expect = 4.9
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 35 aagcagctcgaggcaaagga 54
|||||||||||||| |||||
Sbjct: 52693 aagcagctcgaggccaagga 52712
>NCR_G_C2.010 Ncr_G_C2.010
Length = 27287
Score = 32.2 bits (16), Expect = 4.9
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 493 tacatacattgtggaggatg 512
|||| |||||||||||||||
Sbjct: 13841 tacaaacattgtggaggatg 13860
Database: /phillip/Ncr/Ncr_G
Posted date: Jan 24, 2002 1:55 PM
Number of letters in database: 37,969,317
Number of sequences in database: 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11211
Number of Sequences: 995
Number of extensions: 11211
Number of successful extensions: 15
Number of sequences better than 10.0: 14
length of query: 653
length of database: 37,969,317
effective HSP length: 17
effective length of query: 636
effective length of database: 37,952,402
effective search space: 24137727672
effective search space used: 24137727672
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)