BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNT3/stackpack/blast_Mgr-N/FgrNT3_0_C01.seq
(336 letters)
Database: /phillip/Ncr/MgrN_SP
1206 sequences; 496,015 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CL1CT1CN1 cl1ct1cn1 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:2; ESTS... 34 0.008
CL250CT262CN268 cl250ct262cn268 COVERAGE:0.99; CRAWID: 1; TOTAL_... 32 0.031
CL259CT271CN277 cl259ct271cn277 COVERAGE:0.98; CRAWID: 1; TOTAL_... 30 0.12
MGNS013BD02F.B mgns013bD02f.b LENGTH:331bp ; DIRECTION:0 ; CLONE... 28 0.49
MGNS013AG04F.B mgns013aG04f.b LENGTH:267bp ; DIRECTION:0 ; CLONE... 26 1.9
MGNS011CE02F.B mgns011cE02f.b LENGTH:485bp ; DIRECTION:0 ; CLONE... 26 1.9
MGNS010AA06F.B mgns010aA06f.b LENGTH:577bp ; DIRECTION:0 ; CLONE... 26 1.9
MGNS004DG12F.B mgns004dG12f.b LENGTH:179bp ; DIRECTION:0 ; CLONE... 26 1.9
MGNS002DB08F.B mgns002dB08f.b LENGTH:338bp ; DIRECTION:0 ; CLONE... 26 1.9
CL41CT48CN51 cl41ct48cn51 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:3... 26 1.9
CL38CT45CN48 cl38ct45cn48 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:2... 26 1.9
CL38CT44CN47 cl38ct44cn47 COVERAGE:1.0; CRAWID: 1; TOTAL_ESTS:1;... 26 1.9
MGNS013DB01F.B mgns013dB01f.b LENGTH:487bp ; DIRECTION:0 ; CLONE... 24 7.6
MGNS013DA11F.B mgns013dA11f.b LENGTH:496bp ; DIRECTION:0 ; CLONE... 24 7.6
MGNS013BB06F.B mgns013bB06f.b LENGTH:450bp ; DIRECTION:0 ; CLONE... 24 7.6
MGNS013AF09F.B mgns013aF09f.b LENGTH:318bp ; DIRECTION:0 ; CLONE... 24 7.6
MGNS012AA04F.B mgns012aA04f.b LENGTH:354bp ; DIRECTION:0 ; CLONE... 24 7.6
MGNS010CB04F.B mgns010cB04f.b LENGTH:490bp ; DIRECTION:0 ; CLONE... 24 7.6
MGNS010BD01F.B mgns010bD01f.b LENGTH:419bp ; DIRECTION:0 ; CLONE... 24 7.6
MGNS008DH12F.B mgns008dH12f.b LENGTH:421bp ; DIRECTION:0 ; CLONE... 24 7.6
MGNS008BA07F.B mgns008bA07f.b LENGTH:408bp ; DIRECTION:0 ; CLONE... 24 7.6
MGNS007BC02F.B mgns007bC02f.b LENGTH:504bp ; DIRECTION:0 ; CLONE... 24 7.6
MGNS002AD03F.B mgns002aD03f.b LENGTH:484bp ; DIRECTION:0 ; CLONE... 24 7.6
MGNS002AC03F.B mgns002aC03f.b LENGTH:374bp ; DIRECTION:0 ; CLONE... 24 7.6
CL58CT65CN68 cl58ct65cn68 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:3... 24 7.6
CL235CT247CN253 cl235ct247cn253 COVERAGE:0.99; CRAWID: 1; TOTAL_... 24 7.6
CL208CT219CN225 cl208ct219cn225 COVERAGE:0.99; CRAWID: 1; TOTAL_... 24 7.6
CL196CT207CN213 cl196ct207cn213 COVERAGE:0.99; CRAWID: 1; TOTAL_... 24 7.6
CL187CT198CN204 cl187ct198cn204 COVERAGE:0.99; CRAWID: 1; TOTAL_... 24 7.6
CL14CT15CN15 cl14ct15cn15 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:6... 24 7.6
CL130CT141CN146 cl130ct141cn146 COVERAGE:0.98; CRAWID: 1; TOTAL_... 24 7.6
>CL1CT1CN1 cl1ct1cn1 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:2;
ESTS:mgns001aA01f.b,mgns007dE0
Length = 891
Score = 34.2 bits (17), Expect = 0.008
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 154 ggtttcaccgagcaaat 170
|||||||||||||||||
Sbjct: 98 ggtttcaccgagcaaat 114
>CL250CT262CN268 cl250ct262cn268 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns009cC10f.b,mgns
Length = 423
Score = 32.2 bits (16), Expect = 0.031
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 83 ccatgaagaagcttgaggag 102
||||||||||| ||||||||
Sbjct: 302 ccatgaagaagattgaggag 321
>CL259CT271CN277 cl259ct271cn277 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgns010aF02f.b,mgns
Length = 484
Score = 30.2 bits (15), Expect = 0.12
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 136 aagcagctcaacgag 150
|||||||||||||||
Sbjct: 113 aagcagctcaacgag 127
>MGNS013BD02F.B mgns013bD02f.b LENGTH:331bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 331
Score = 28.2 bits (14), Expect = 0.49
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 18 caagactgtcttcg 31
||||||||||||||
Sbjct: 313 caagactgtcttcg 326
>MGNS013AG04F.B mgns013aG04f.b LENGTH:267bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 267
Score = 26.3 bits (13), Expect = 1.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 314 agctccttattat 326
|||||||||||||
Sbjct: 98 agctccttattat 110
>MGNS011CE02F.B mgns011cE02f.b LENGTH:485bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 485
Score = 26.3 bits (13), Expect = 1.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 284 acgatgtgaacaa 296
|||||||||||||
Sbjct: 287 acgatgtgaacaa 299
>MGNS010AA06F.B mgns010aA06f.b LENGTH:577bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 577
Score = 26.3 bits (13), Expect = 1.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 81 gaccatgaagaag 93
|||||||||||||
Sbjct: 271 gaccatgaagaag 283
>MGNS004DG12F.B mgns004dG12f.b LENGTH:179bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 179
Score = 26.3 bits (13), Expect = 1.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 82 accatgaagaagc 94
|||||||||||||
Sbjct: 166 accatgaagaagc 178
>MGNS002DB08F.B mgns002dB08f.b LENGTH:338bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 338
Score = 26.3 bits (13), Expect = 1.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 220 gctctataccgcg 232
|||||||||||||
Sbjct: 157 gctctataccgcg 169
>CL41CT48CN51 cl41ct48cn51 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:3;
ESTS:mgns001bC02f.b,mgns002
Length = 775
Score = 26.3 bits (13), Expect = 1.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 231 cgctgtcttcgag 243
|||||||||||||
Sbjct: 332 cgctgtcttcgag 344
>CL38CT45CN48 cl38ct45cn48 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:254;
ESTS:mgns001bB04f.b,mgns0
Length = 937
Score = 26.3 bits (13), Expect = 1.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 82 accatgaagaagc 94
|||||||||||||
Sbjct: 215 accatgaagaagc 227
>CL38CT44CN47 cl38ct44cn47 COVERAGE:1.0; CRAWID: 1; TOTAL_ESTS:1;
ESTS:mgns004dF07f.b; LENGTH:
Length = 573
Score = 26.3 bits (13), Expect = 1.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 82 accatgaagaagc 94
|||||||||||||
Sbjct: 159 accatgaagaagc 171
>MGNS013DB01F.B mgns013dB01f.b LENGTH:487bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 487
Score = 24.3 bits (12), Expect = 7.6
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 105 cggtgtcactac 116
||||||||||||
Sbjct: 413 cggtgtcactac 424
>MGNS013DA11F.B mgns013dA11f.b LENGTH:496bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 496
Score = 24.3 bits (12), Expect = 7.6
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 161 ccgagcaaatgg 172
||||||||||||
Sbjct: 190 ccgagcaaatgg 201
>MGNS013BB06F.B mgns013bB06f.b LENGTH:450bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 450
Score = 24.3 bits (12), Expect = 7.6
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 30 cgtcgagcacga 41
||||||||||||
Sbjct: 248 cgtcgagcacga 237
>MGNS013AF09F.B mgns013aF09f.b LENGTH:318bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 318
Score = 24.3 bits (12), Expect = 7.6
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 23 ctgtcttcgtcg 34
||||||||||||
Sbjct: 246 ctgtcttcgtcg 257
>MGNS012AA04F.B mgns012aA04f.b LENGTH:354bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 354
Score = 24.3 bits (12), Expect = 7.6
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 84 catgaagaagct 95
||||||||||||
Sbjct: 298 catgaagaagct 309
>MGNS010CB04F.B mgns010cB04f.b LENGTH:490bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 490
Score = 24.3 bits (12), Expect = 7.6
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 181 gagatcagcgcc 192
||||||||||||
Sbjct: 97 gagatcagcgcc 108
>MGNS010BD01F.B mgns010bD01f.b LENGTH:419bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 419
Score = 24.3 bits (12), Expect = 7.6
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 233 ctgtcttcgagg 244
||||||||||||
Sbjct: 200 ctgtcttcgagg 211
>MGNS008DH12F.B mgns008dH12f.b LENGTH:421bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 421
Score = 24.3 bits (12), Expect = 7.6
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 60 tgagatgaccac 71
||||||||||||
Sbjct: 276 tgagatgaccac 265
>MGNS008BA07F.B mgns008bA07f.b LENGTH:408bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 408
Score = 24.3 bits (12), Expect = 7.6
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 130 gtcgagaagcag 141
||||||||||||
Sbjct: 365 gtcgagaagcag 354
>MGNS007BC02F.B mgns007bC02f.b LENGTH:504bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 504
Score = 24.3 bits (12), Expect = 7.6
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 12 cgaggtcaagac 23
||||||||||||
Sbjct: 305 cgaggtcaagac 316
>MGNS002AD03F.B mgns002aD03f.b LENGTH:484bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 484
Score = 24.3 bits (12), Expect = 7.6
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 92 agcttgaggagg 103
||||||||||||
Sbjct: 207 agcttgaggagg 196
>MGNS002AC03F.B mgns002aC03f.b LENGTH:374bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 374
Score = 24.3 bits (12), Expect = 7.6
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 74 ttgactggacca 85
||||||||||||
Sbjct: 281 ttgactggacca 292
>CL58CT65CN68 cl58ct65cn68 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:3;
ESTS:mgns001bG11f.b,mgns009
Length = 532
Score = 24.3 bits (12), Expect = 7.6
Identities = 15/16 (93%)
Strand = Plus / Minus
Query: 201 tggttggaagataaag 216
||||||||||| ||||
Sbjct: 62 tggttggaagacaaag 47
>CL235CT247CN253 cl235ct247cn253 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgns008cD11f.b,mgns
Length = 537
Score = 24.3 bits (12), Expect = 7.6
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 207 gaagataaagct 218
||||||||||||
Sbjct: 172 gaagataaagct 183
>CL208CT219CN225 cl208ct219cn225 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns007cA09f.b,mgns
Length = 672
Score = 24.3 bits (12), Expect = 7.6
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 135 gaagcagctcaa 146
||||||||||||
Sbjct: 275 gaagcagctcaa 286
>CL196CT207CN213 cl196ct207cn213 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns007bA01f.b,mgns
Length = 517
Score = 24.3 bits (12), Expect = 7.6
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 100 gaggccggtgtc 111
||||||||||||
Sbjct: 235 gaggccggtgtc 246
>CL187CT198CN204 cl187ct198cn204 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns007aD02f.b,mgns
Length = 852
Score = 24.3 bits (12), Expect = 7.6
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 209 agataaagcttg 220
||||||||||||
Sbjct: 533 agataaagcttg 522
>CL14CT15CN15 cl14ct15cn15 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:6;
ESTS:mgns001aC01f.b,mgns002
Length = 691
Score = 24.3 bits (12), Expect = 7.6
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 195 ctctggtggttg 206
||||||||||||
Sbjct: 87 ctctggtggttg 76
>CL130CT141CN146 cl130ct141cn146 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:4; ESTS:mgns002bF03f.b,mgns
Length = 1180
Score = 24.3 bits (12), Expect = 7.6
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 88 aagaagcttgag 99
||||||||||||
Sbjct: 1124 aagaagcttgag 1135
Database: /phillip/Ncr/MgrN_SP
Posted date: Feb 18, 2002 5:07 PM
Number of letters in database: 496,015
Number of sequences in database: 1206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 108
Number of Sequences: 1206
Number of extensions: 108
Number of successful extensions: 31
Number of sequences better than 10.0: 31
length of query: 336
length of database: 496,015
effective HSP length: 13
effective length of query: 323
effective length of database: 480,337
effective search space: 155148851
effective search space used: 155148851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 12 (24.3 bits)