TBLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNT3/stackpack/blast_Mgr-N/FgrNT3_0_C01.seq
(336 letters)
Database: /phillip/Ncr/MgrN_SP
1206 sequences; 496,015 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGNS008DH12F.B mgns008dH12f.b LENGTH:421bp ; DIRECTION:0 ; CLONE... 25 0.12
CL65CT73CN76 cl65ct73cn76 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:6... 26 0.13
MGNS009CE07F.B mgns009cE07f.b LENGTH:418bp ; DIRECTION:0 ; CLONE... 24 0.47
MGNS010BE03F.B mgns010bE03f.b LENGTH:526bp ; DIRECTION:0 ; CLONE... 24 0.89
MGNS013DA11F.B mgns013dA11f.b LENGTH:496bp ; DIRECTION:0 ; CLONE... 24 0.89
MGNS001AD02F.B mgns001aD02f.b LENGTH:488bp ; DIRECTION:0 ; CLONE... 23 1.2
MGNS001DB05F.B mgns001dB05f.b LENGTH:367bp ; DIRECTION:0 ; CLONE... 23 1.7
MGNS010AH04F.B mgns010aH04f.b LENGTH:522bp ; DIRECTION:0 ; CLONE... 23 1.7
MGNS011AE11F.B mgns011aE11f.b LENGTH:416bp ; DIRECTION:0 ; CLONE... 23 1.7
CL28CT34CN37 cl28ct34cn37 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:6... 22 2.3
MGNS002CE01F.B mgns002cE01f.b LENGTH:484bp ; DIRECTION:0 ; CLONE... 22 2.3
MGNS008AE08F.B mgns008aE08f.b LENGTH:340bp ; DIRECTION:0 ; CLONE... 22 2.3
MGNS007DF12F.B mgns007dF12f.b LENGTH:440bp ; DIRECTION:0 ; CLONE... 22 3.2
CL105CT116CN121 cl105ct116cn121 COVERAGE:0.99; CRAWID: 1; TOTAL_... 22 3.2
CL224CT235CN241 cl224ct235cn241 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 22 3.2
MGNS007AC10F.B mgns007aC10f.b LENGTH:484bp ; DIRECTION:0 ; CLONE... 22 3.2
MGNS013DA09F.B mgns013dA09f.b LENGTH:446bp ; DIRECTION:0 ; CLONE... 21 4.3
CL215CT226CN232 cl215ct226cn232 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 21 4.3
MGNS002CC05F.B mgns002cC05f.b LENGTH:343bp ; DIRECTION:0 ; CLONE... 21 4.3
CL236CT248CN254 cl236ct248cn254 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 21 4.3
CL84CT94CN98 cl84ct94cn98 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:2... 21 6.0
MGNS007CC08F.B mgns007cC08f.b LENGTH:463bp ; DIRECTION:0 ; CLONE... 21 6.0
MGNS002CF07F.B mgns002cF07f.b LENGTH:463bp ; DIRECTION:0 ; CLONE... 21 6.0
MGNS008BA05F.B mgns008bA05f.b LENGTH:431bp ; DIRECTION:0 ; CLONE... 21 6.0
MGNS002CE10F.B mgns002cE10f.b LENGTH:336bp ; DIRECTION:0 ; CLONE... 21 6.0
MGNS001DC07F.B mgns001dC07f.b LENGTH:351bp ; DIRECTION:0 ; CLONE... 20 8.2
MGNS013DC09F.B mgns013dC09f.b LENGTH:408bp ; DIRECTION:0 ; CLONE... 20 8.2
MGNS007BB04F.B mgns007bB04f.b LENGTH:109bp ; DIRECTION:0 ; CLONE... 20 8.2
CL138CT149CN154 cl138ct149cn154 COVERAGE:0.96; CRAWID: 1; TOTAL_... 20 8.2
MGNS007AH06F.B mgns007aH06f.b LENGTH:451bp ; DIRECTION:0 ; CLONE... 20 8.2
MGNS012AB02F.B mgns012aB02f.b LENGTH:415bp ; DIRECTION:0 ; CLONE... 20 8.2
MGNS011BH05F.B mgns011bH05f.b LENGTH:433bp ; DIRECTION:0 ; CLONE... 20 8.2
MGNS007AC08F.B mgns007aC08f.b LENGTH:531bp ; DIRECTION:0 ; CLONE... 20 8.2
>MGNS008DH12F.B mgns008dH12f.b LENGTH:421bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 421
Score = 25.3 bits (49), Expect(2) = 0.12
Identities = 9/17 (52%), Positives = 12/17 (69%)
Frame = -2 / +3
Query: 191 ALISPLTICSVKPNSLS 141
A ++PLT SV PN L+
Sbjct: 93 AQVAPLTYTSVIPNWLA 143
Score = 19.4 bits (36), Expect(2) = 0.12
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = -1 / +3
Query: 87 HGPVNGGHLS 58
HG NGG++S
Sbjct: 147 HGVENGGYIS 176
>CL65CT73CN76 cl65ct73cn76 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:6;
ESTS:mgns001cA09f.b,mgns002
Length = 498
Score = 26.3 bits (51), Expect = 0.13
Identities = 13/42 (30%), Positives = 21/42 (49%)
Frame = +1 / -1
Query: 16 VKTVFVEHDLDSADTEMTTIDWTMKKLEEAGVTTTQADVEKQ 141
VKT +H L D ++ T+D + L + G TT V+ +
Sbjct: 297 VKTAGADHLLLVLDQKLHTLDGSSGGLRDGGGNTTHQKVDHE 172
>MGNS009CE07F.B mgns009cE07f.b LENGTH:418bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 418
Score = 24.4 bits (47), Expect = 0.47
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -1 / +1
Query: 93 LLHGPVNGGHLSI 55
LLH V+GGHLS+
Sbjct: 337 LLHLAVSGGHLSV 375
>MGNS010BE03F.B mgns010bE03f.b LENGTH:526bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 526
Score = 23.5 bits (45), Expect = 0.89
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -2 / -3
Query: 137 FSTSAWVVVTP 105
FSTS W V++P
Sbjct: 242 FSTSCWAVISP 210
>MGNS013DA11F.B mgns013dA11f.b LENGTH:496bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 496
Score = 23.5 bits (45), Expect = 0.89
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3 / +1
Query: 189 RPLWWLEDKACSIPRCLRGSK 251
RP WWL K R R SK
Sbjct: 136 RPTWWLSTKREQRSRA*RPSK 198
>MGNS001AD02F.B mgns001aD02f.b LENGTH:488bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 488
Score = 23.1 bits (44), Expect = 1.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1 / +3
Query: 108 TGLLKLLHGPVNGGHLSIS 52
+ LL +H P GGH S S
Sbjct: 156 SNLLNSVHHPYAGGHCSAS 212
>MGNS001DB05F.B mgns001dB05f.b LENGTH:367bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 367
Score = 22.6 bits (43), Expect = 1.7
Identities = 14/45 (31%), Positives = 18/45 (39%)
Frame = -2 / +3
Query: 296 LFTS*SLVGSSSNRIFGASKTARYRASFIFQPPERALISPLTICS 162
L S S SSS R+F + S + R + PLT S
Sbjct: 201 LVVSRSAPSSSSPRVFPGYSRTFWATSLVCPSTTRRISPPLTTLS 335
>MGNS010AH04F.B mgns010aH04f.b LENGTH:522bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 522
Score = 22.6 bits (43), Expect = 1.7
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -2 / +3
Query: 320 RSSWPP*RL 294
RSSWPP RL
Sbjct: 237 RSSWPPTRL 263
>MGNS011AE11F.B mgns011aE11f.b LENGTH:416bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 416
Score = 22.6 bits (43), Expect = 1.7
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -3 / +3
Query: 205 NHQRGR*SHP 176
NH+RGR +HP
Sbjct: 252 NHRRGRGAHP 281
>CL28CT34CN37 cl28ct34cn37 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:6;
ESTS:mgns001aF08f.b,mgns001
Length = 854
Score = 22.1 bits (42), Expect = 2.3
Identities = 5/12 (41%), Positives = 7/12 (57%)
Frame = +3 / -1
Query: 186 QRPLWWLEDKAC 221
+RP WW +C
Sbjct: 716 ERPTWWQSSTSC 681
>MGNS002CE01F.B mgns002cE01f.b LENGTH:484bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 484
Score = 22.1 bits (42), Expect = 2.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2 / +3
Query: 224 RASFIFQPPERALISPLTIC 165
R SF+ QPP+R + L C
Sbjct: 117 RLSFVQQPPDRQEPN*LIFC 176
>MGNS008AE08F.B mgns008aE08f.b LENGTH:340bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 340
Score = 22.1 bits (42), Expect = 2.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2 / -1
Query: 230 ALSSRLQRFCC*MSLPMITM 289
ALSS++Q C PMI++
Sbjct: 64 ALSSKIQALCTAARRPMISV 5
>MGNS007DF12F.B mgns007dF12f.b LENGTH:440bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 440
Score = 21.7 bits (41), Expect = 3.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3 / -3
Query: 273 YQ*SRCEQPLGGP 311
+Q SRC + LGGP
Sbjct: 294 WQTSRCMRHLGGP 256
>CL105CT116CN121 cl105ct116cn121 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:7; ESTS:mgns002aC09f.b,mgns
Length = 888
Score = 21.7 bits (41), Expect = 3.2
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +1 / -1
Query: 37 HDLDSADTEMTTIDWTMKKLEEAGVTTTQADV 132
HD +SAD + + W A VTT + +
Sbjct: 768 HDRESADALLNYLAWVGTSSPIALVTTIKTSL 673
>CL224CT235CN241 cl224ct235cn241 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns008aD07f.b,mgns0
Length = 389
Score = 21.7 bits (41), Expect = 3.2
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -2 / +1
Query: 188 LISPLTICSVK 156
LISP++ICS K
Sbjct: 16 LISPVSICSSK 48
>MGNS007AC10F.B mgns007aC10f.b LENGTH:484bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 484
Score = 21.7 bits (41), Expect = 3.2
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1 / -1
Query: 187 SALSGGWKIK 216
SAL GGW +K
Sbjct: 367 SALGGGWVVK 338
Score = 20.3 bits (38), Expect = 8.2
Identities = 5/9 (55%), Positives = 7/9 (77%)
Frame = -3 / -3
Query: 304 PKGCSHRDH 278
P+GC HR +
Sbjct: 218 PRGCGHRHY 192
>MGNS013DA09F.B mgns013dA09f.b LENGTH:446bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 446
Score = 21.2 bits (40), Expect = 4.3
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = -3 / +2
Query: 238 RQRGIEQALSSNHQRGR*SH 179
+QRG Q L + RG H
Sbjct: 128 QQRGCRQQLPLHPARGHLCH 187
>CL215CT226CN232 cl215ct226cn232 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns007cG11f.b,mgns0
Length = 851
Score = 21.2 bits (40), Expect = 4.3
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = +3 / -2
Query: 186 QRPLW 200
+RPLW
Sbjct: 211 ERPLW 197
>MGNS002CC05F.B mgns002cC05f.b LENGTH:343bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 343
Score = 21.2 bits (40), Expect = 4.3
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +1 / +2
Query: 205 WKIKLALYRAVFEAPKILLLD 267
W+++L L + A ++L LD
Sbjct: 62 WRVQLTLSKIRRAARQLLTLD 124
>CL236CT248CN254 cl236ct248cn254 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns008cE02f.b,mgns0
Length = 330
Score = 21.2 bits (40), Expect = 4.3
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +1 / +2
Query: 226 YRAVFEAPK 252
YRA+F PK
Sbjct: 14 YRAIFHQPK 40
>CL84CT94CN98 cl84ct94cn98 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:2;
ESTS:mgns001cH05f.b,mgns013
Length = 395
Score = 20.8 bits (39), Expect = 6.0
Identities = 4/4 (100%), Positives = 4/4 (100%)
Frame = +3 / +3
Query: 108 CHYH 119
CHYH
Sbjct: 111 CHYH 122
>MGNS007CC08F.B mgns007cC08f.b LENGTH:463bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 463
Score = 20.8 bits (39), Expect = 6.0
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +3 / -1
Query: 105 RCHYHPG*CREAAQ 146
RC HP CR A +
Sbjct: 124 RCKVHPMTCRSARE 83
>MGNS002CF07F.B mgns002cF07f.b LENGTH:463bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 463
Score = 20.8 bits (39), Expect = 6.0
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2 / +1
Query: 320 RSSWPP*R 297
R SWPP*R
Sbjct: 97 RCSWPP*R 120
>MGNS008BA05F.B mgns008bA05f.b LENGTH:431bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 431
Score = 20.8 bits (39), Expect = 6.0
Identities = 7/9 (77%), Positives = 9/9 (99%)
Frame = -1 / -2
Query: 123 LGGSDTGLL 97
LGG+DTGL+
Sbjct: 55 LGGTDTGLV 29
>MGNS002CE10F.B mgns002cE10f.b LENGTH:336bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 336
Score = 20.8 bits (39), Expect = 6.0
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = +3 / +1
Query: 219 CSIPRCLRGSKDSVAR*AYQ*SRCEQPLG 305
C +PRCL S +A A Q +G
Sbjct: 229 CLMPRCLMSSSTRLA*RALQRPGTGVRMG 315
>MGNS001DC07F.B mgns001dC07f.b LENGTH:351bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 351
Score = 20.3 bits (38), Expect = 8.2
Identities = 8/34 (23%), Positives = 13/34 (37%)
Frame = -2 / +3
Query: 209 FQPPERALISPLTICSVKPNSLSCFSTSAWVVVT 108
F PP+ P S + + S+ W +T
Sbjct: 120 FNPPKWTPTRPRASSSTSTTTSTRASSRRWSTMT 221
>MGNS013DC09F.B mgns013dC09f.b LENGTH:408bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 408
Score = 20.3 bits (38), Expect = 8.2
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +3 / +1
Query: 201 WLEDKACSIPRC 236
WL SIPRC
Sbjct: 19 WLMASVYSIPRC 54
>MGNS007BB04F.B mgns007bB04f.b LENGTH:109bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 109
Score = 20.3 bits (38), Expect = 8.2
Identities = 5/10 (50%), Positives = 9/10 (90%)
Frame = -2 / +1
Query: 170 ICSVKPNSLS 141
+C++KPN +S
Sbjct: 52 LCNIKPNPIS 81
>CL138CT149CN154 cl138ct149cn154 COVERAGE:0.96; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns002cC09f.b,mgns
Length = 376
Score = 20.3 bits (38), Expect = 8.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3 / +2
Query: 211 SSNHQRGR*SHP*P 170
+SNH+RGR P P
Sbjct: 152 TSNHRRGRALGPPP 193
>MGNS007AH06F.B mgns007aH06f.b LENGTH:451bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 451
Score = 20.3 bits (38), Expect = 8.2
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = -2 / +3
Query: 179 PLTICSVKPNSLSCFS 132
P C V N SCFS
Sbjct: 21 PQRDCKVVRNRFSCFS 68
>MGNS012AB02F.B mgns012aB02f.b LENGTH:415bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 415
Score = 20.3 bits (38), Expect = 8.2
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1 / +3
Query: 97 EEAGVTTT 120
EE GVTTT
Sbjct: 369 EEDGVTTT 392
>MGNS011BH05F.B mgns011bH05f.b LENGTH:433bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 433
Score = 20.3 bits (38), Expect = 8.2
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -2 / -3
Query: 146 LSCFSTSAWVV 114
LSC S S+W V
Sbjct: 332 LSCSSQSSWAV 300
>MGNS007AC08F.B mgns007aC08f.b LENGTH:531bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 531
Score = 20.3 bits (38), Expect = 8.2
Identities = 4/11 (36%), Positives = 10/11 (90%)
Frame = -3 / -3
Query: 226 IEQALSSNHQR 194
+E ++++NHQ+
Sbjct: 214 VEASVTANHQK 182
Database: /phillip/Ncr/MgrN_SP
Posted date: Feb 18, 2002 5:07 PM
Number of letters in database: 496,015
Number of sequences in database: 1206
Lambda K H
0.318 0.135 0.401
Matrix: BLOSUM62
Number of Hits to DB: 345111
Number of Sequences: 1206
Number of extensions: 4230
Number of successful extensions: 194
Number of sequences better than 10.0: 37
length of query: 112
length of database: 165,338
effective HSP length: 34
effective length of query: 77
effective length of database: 124,334
effective search space: 9573718
effective search space used: 9573718
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 38 (20.3 bits)