BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNT3/stackpack/blast_Mgr-N/FgrNT3_0_C11.seq
(624 letters)
Database: /phillip/Ncr/MgrN_SP
1206 sequences; 496,015 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGNS013DA09F.B mgns013dA09f.b LENGTH:446bp ; DIRECTION:0 ; CLONE... 28 0.92
MGNS010CG03F.B mgns010cG03f.b LENGTH:454bp ; DIRECTION:0 ; CLONE... 28 0.92
MGNS001DE03F.B mgns001dE03f.b LENGTH:285bp ; DIRECTION:0 ; CLONE... 28 0.92
CL222CT233CN239 cl222ct233cn239 COVERAGE:0.99; CRAWID: 1; TOTAL_... 28 0.92
MGNS011DC01F.B mgns011dC01f.b LENGTH:415bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS010AA07F.B mgns010aA07f.b LENGTH:366bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS002CE10F.B mgns002cE10f.b LENGTH:336bp ; DIRECTION:0 ; CLONE... 26 3.6
CL43CT50CN53 cl43ct50cn53 COVERAGE:0.95; CRAWID: 1; TOTAL_ESTS:2... 26 3.6
CL24CT30CN33 cl24ct30cn33 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:1... 26 3.6
CL119CT130CN135 cl119ct130cn135 COVERAGE:0.98; CRAWID: 1; TOTAL_... 26 3.6
CL116CT127CN132 cl116ct127cn132 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 3.6
CL105CT116CN121 cl105ct116cn121 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 3.6
>MGNS013DA09F.B mgns013dA09f.b LENGTH:446bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 446
Score = 28.2 bits (14), Expect = 0.92
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 563 tgagcaggatggtgtcaa 580
|||| |||||||||||||
Sbjct: 113 tgaggaggatggtgtcaa 130
>MGNS010CG03F.B mgns010cG03f.b LENGTH:454bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 454
Score = 28.2 bits (14), Expect = 0.92
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 2 catgttcacctcaa 15
||||||||||||||
Sbjct: 299 catgttcacctcaa 312
>MGNS001DE03F.B mgns001dE03f.b LENGTH:285bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 285
Score = 28.2 bits (14), Expect = 0.92
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 567 caggatggtgtcaa 580
||||||||||||||
Sbjct: 201 caggatggtgtcaa 214
>CL222CT233CN239 cl222ct233cn239 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:mgns008aB01f.b,mgns
Length = 440
Score = 28.2 bits (14), Expect = 0.92
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 35 gctacgacgagcat 48
||||||||||||||
Sbjct: 396 gctacgacgagcat 409
>MGNS011DC01F.B mgns011dC01f.b LENGTH:415bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 415
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 89 cacatcgagacct 101
|||||||||||||
Sbjct: 292 cacatcgagacct 280
>MGNS010AA07F.B mgns010aA07f.b LENGTH:366bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 366
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 561 gttgagcaggatg 573
|||||||||||||
Sbjct: 317 gttgagcaggatg 329
>MGNS002CE10F.B mgns002cE10f.b LENGTH:336bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 336
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 596 caaggcgcttttc 608
|||||||||||||
Sbjct: 89 caaggcgcttttc 101
>CL43CT50CN53 cl43ct50cn53 COVERAGE:0.95; CRAWID: 1; TOTAL_ESTS:2;
ESTS:mgns001bC06f.b,mgns011
Length = 414
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 246 catcctcagccgc 258
|||||||||||||
Sbjct: 71 catcctcagccgc 59
>CL24CT30CN33 cl24ct30cn33 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:13;
ESTS:mgns001aE03f.b,mgns00
Length = 769
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 467 gaagctcatcaag 479
|||||||||||||
Sbjct: 399 gaagctcatcaag 411
>CL119CT130CN135 cl119ct130cn135 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns002aH06f.b,mgns
Length = 741
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 495 cgaggatgcagtg 507
|||||||||||||
Sbjct: 291 cgaggatgcagtg 279
>CL116CT127CN132 cl116ct127cn132 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns002aG02f.b,mgns
Length = 620
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 228 cctccccagcagc 240
|||||||||||||
Sbjct: 207 cctccccagcagc 219
>CL105CT116CN121 cl105ct116cn121 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:7; ESTS:mgns002aC09f.b,mgns
Length = 888
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 264 caacaagaagctg 276
|||||||||||||
Sbjct: 445 caacaagaagctg 457
Database: /phillip/Ncr/MgrN_SP
Posted date: Feb 18, 2002 5:07 PM
Number of letters in database: 496,015
Number of sequences in database: 1206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 174
Number of Sequences: 1206
Number of extensions: 174
Number of successful extensions: 45
Number of sequences better than 10.0: 12
length of query: 624
length of database: 496,015
effective HSP length: 14
effective length of query: 610
effective length of database: 479,131
effective search space: 292269910
effective search space used: 292269910
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)