The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.

BLASTX 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FgrNT3_0_E01.seq Fgr_0_E01 LENGTH:261bp ; DIRECTION:5 ;
CLONE:Fgr_0_E01 ; CLONELIB: n/a ; TISSUE:
         (261 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
           907,641 sequences; 284,333,007 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG09197.1|AF175209_1  (AF175209) Indian hedgehog protein...    31   3.2  
ref|XP_058767.2|  (XM_058767) similar to hemoglobin, zeta [H...    30   4.2  
sp|P97812|IHH_MOUSE  INDIAN HEDGEHOG PROTEIN PRECURSOR (IHH)...    29   9.5  
ref|NP_034674.1|  (NM_010544) Indian hedgehog homolog, (Dros...    29   9.5  
pir||C49425  Indian hedgehog protein - mouse (fragment)            29   9.5  
emb|CAA53923.1|  (X76291) indian hedgehog [Mus musculus]           29   9.5  

>gb|AAG09197.1|AF175209_1 (AF175209) Indian hedgehog protein [Rattus norvegicus]
          Length = 125

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +1

Query: 1   PRRLFQAPLRILFISDNMAEPIRGKRA 81
           PRRL   P  +LFI+DN AEP    RA
Sbjct: 50  PRRLALTPAHLLFIADNHAEPAARFRA 76



>ref|XP_058767.2| (XM_058767) similar to hemoglobin, zeta [Homo sapiens]
          Length = 115

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 22/62 (35%), Positives = 26/62 (41%)
 Frame = +3

Query: 3   KTFIPSASTHSFHIRQYGRAHPWKACSGRRGSYASEHSRNRRSYVFSR*GARCL*HQGGG 182
           KT+ P    H   +R   RA       GRRG    EH R+RR  V +   AR   H   G
Sbjct: 55  KTYFPHFDLHPGSVRAVARAR--LQGGGRRGRRGEEHRRHRRRPVQAERAARL--HPARG 110

Query: 183 SG 188
            G
Sbjct: 111 PG 112



>sp|P97812|IHH_MOUSE INDIAN HEDGEHOG PROTEIN PRECURSOR (IHH) (HHG-2)
          Length = 411

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 14/27 (51%), Positives = 16/27 (58%)
 Frame = +1

Query: 1   PRRLFQAPLRILFISDNMAEPIRGKRA 81
           PRRL   P  +LFI+DN  EP    RA
Sbjct: 266 PRRLALTPAHLLFIADNHTEPAAHFRA 292



>ref|NP_034674.1| (NM_010544) Indian hedgehog homolog, (Drosophila) [Mus musculus]
 gb|AAB49692.1| (U85610) Indian hedgehog protein [Mus musculus]
          Length = 449

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 14/27 (51%), Positives = 16/27 (58%)
 Frame = +1

Query: 1   PRRLFQAPLRILFISDNMAEPIRGKRA 81
           PRRL   P  +LFI+DN  EP    RA
Sbjct: 304 PRRLALTPAHLLFIADNHTEPAAHFRA 330



>pir||C49425 Indian hedgehog protein - mouse (fragment)
          Length = 336

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 14/27 (51%), Positives = 16/27 (58%)
 Frame = +1

Query: 1   PRRLFQAPLRILFISDNMAEPIRGKRA 81
           PRRL   P  +LFI+DN  EP    RA
Sbjct: 191 PRRLALTPAHLLFIADNHTEPAAHFRA 217



>emb|CAA53923.1| (X76291) indian hedgehog [Mus musculus]
          Length = 336

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 14/27 (51%), Positives = 16/27 (58%)
 Frame = +1

Query: 1   PRRLFQAPLRILFISDNMAEPIRGKRA 81
           PRRL   P  +LFI+DN  EP    RA
Sbjct: 191 PRRLALTPAHLLFIADNHTEPAAHFRA 217



  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 29, 2002  2:16 AM
  Number of letters in database: 284,333,007
  Number of sequences in database:  907,641
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.267   0.0410 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,072,073
Number of Sequences: 907641
Number of extensions: 2456212
Number of successful extensions: 6710
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6703
length of database: 284,333,007
effective HSP length: 62
effective length of database: 228,059,265
effective search space used: 5473422360
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)