BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNT3/stackpack/blast_Mgr-N/FgrNT3_0_E17.seq
(619 letters)
Database: /phillip/Ncr/MgrN_SP
1206 sequences; 496,015 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CL200CT211CN217 cl200ct211cn217 COVERAGE:0.99; CRAWID: 1; TOTAL_... 34 0.015
CL80CT90CN94 cl80ct90cn94 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:8... 32 0.058
MGNS007AB05F.B mgns007aB05f.b LENGTH:500bp ; DIRECTION:0 ; CLONE... 30 0.23
MGNS001BA11F.B mgns001bA11f.b LENGTH:550bp ; DIRECTION:0 ; CLONE... 30 0.23
MGNS011DF04F.B mgns011dF04f.b LENGTH:371bp ; DIRECTION:0 ; CLONE... 28 0.91
MGNS007BA02F.B mgns007bA02f.b LENGTH:389bp ; DIRECTION:0 ; CLONE... 28 0.91
MGNS006BG10F.B mgns006bG10f.b LENGTH:496bp ; DIRECTION:0 ; CLONE... 28 0.91
MGNS001CD12F.B mgns001cD12f.b LENGTH:333bp ; DIRECTION:0 ; CLONE... 28 0.91
CL6CT6CN6 cl6ct6cn6 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:15; EST... 28 0.91
CL154CT165CN171 cl154ct165cn171 COVERAGE:0.97; CRAWID: 1; TOTAL_... 28 0.91
CL11CT12CN12 cl11ct12cn12 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:4... 28 0.91
MGNS013DF09F.B mgns013dF09f.b LENGTH:462bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS013BF08F.B mgns013bF08f.b LENGTH:368bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS012CE01F.B mgns012cE01f.b LENGTH:380bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS012AA07F.B mgns012aA07f.b LENGTH:440bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS011AF02F.B mgns011aF02f.b LENGTH:434bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS010CC11F.B mgns010cC11f.b LENGTH:395bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS010AB08F.B mgns010aB08f.b LENGTH:494bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS010AB04F.B mgns010aB04f.b LENGTH:505bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS009AD09F.B mgns009aD09f.b LENGTH:420bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS007AD10F.B mgns007aD10f.b LENGTH:503bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS007AC06F.B mgns007aC06f.b LENGTH:337bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS002CH11F.B mgns002cH11f.b LENGTH:419bp ; DIRECTION:0 ; CLONE... 26 3.6
CL85CT95CN99 cl85ct95cn99 COVERAGE:0.95; CRAWID: 1; TOTAL_ESTS:2... 26 3.6
CL65CT73CN76 cl65ct73cn76 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:6... 26 3.6
CL263CT275CN281 cl263ct275cn281 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 26 3.6
CL258CT270CN276 cl258ct270cn276 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 3.6
CL243CT255CN261 cl243ct255cn261 COVERAGE:0.98; CRAWID: 1; TOTAL_... 26 3.6
CL235CT247CN253 cl235ct247cn253 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 3.6
CL1CT1CN1 cl1ct1cn1 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:2; ESTS... 26 3.6
CL199CT210CN216 cl199ct210cn216 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 3.6
CL157CT168CN174 cl157ct168cn174 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 26 3.6
>CL200CT211CN217 cl200ct211cn217 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgns007bD07f.b,mgns
Length = 537
Score = 34.2 bits (17), Expect = 0.015
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 12 tcaaggactccaagaag 28
|||||||||||||||||
Sbjct: 463 tcaaggactccaagaag 479
>CL80CT90CN94 cl80ct90cn94 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:8;
ESTS:mgns001cG09f.b,mgns001
Length = 668
Score = 32.2 bits (16), Expect = 0.058
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 541 ggccgccatcaacacctaca 560
||||||||||| ||||||||
Sbjct: 549 ggccgccatcaccacctaca 568
Score = 28.2 bits (14), Expect = 0.91
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 206 gtcaccgccactga 219
||||||||||||||
Sbjct: 610 gtcaccgccactga 623
>MGNS007AB05F.B mgns007aB05f.b LENGTH:500bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 500
Score = 30.2 bits (15), Expect = 0.23
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 398 ctcaagaccaagaag 412
|||||||||||||||
Sbjct: 406 ctcaagaccaagaag 420
>MGNS001BA11F.B mgns001bA11f.b LENGTH:550bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 550
Score = 30.2 bits (15), Expect = 0.23
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 480 acctcgacgccgaga 494
|||||||||||||||
Sbjct: 512 acctcgacgccgaga 526
>MGNS011DF04F.B mgns011dF04f.b LENGTH:371bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 371
Score = 28.2 bits (14), Expect = 0.91
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 400 caagaccaagaagg 413
||||||||||||||
Sbjct: 129 caagaccaagaagg 142
>MGNS007BA02F.B mgns007bA02f.b LENGTH:389bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 389
Score = 28.2 bits (14), Expect = 0.91
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 280 cggcatccaggtct 293
||||||||||||||
Sbjct: 222 cggcatccaggtct 209
>MGNS006BG10F.B mgns006bG10f.b LENGTH:496bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 496
Score = 28.2 bits (14), Expect = 0.91
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 400 caagaccaagaagggcga 417
|||||||||||| |||||
Sbjct: 218 caagaccaagaatggcga 235
>MGNS001CD12F.B mgns001cD12f.b LENGTH:333bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 333
Score = 28.2 bits (14), Expect = 0.91
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 413 ggcgagatcaccac 426
||||||||||||||
Sbjct: 318 ggcgagatcaccac 331
>CL6CT6CN6 cl6ct6cn6 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:15;
ESTS:mgns001aA09f.b,mgns001aC
Length = 983
Score = 28.2 bits (14), Expect = 0.91
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 313 tgaggagctcgtcc 326
||||||||||||||
Sbjct: 434 tgaggagctcgtcc 421
>CL154CT165CN171 cl154ct165cn171 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:4; ESTS:mgns002dE01f.b,mgns
Length = 435
Score = 28.2 bits (14), Expect = 0.91
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 21 ccaagaagcacaag 34
||||||||||||||
Sbjct: 146 ccaagaagcacaag 159
>CL11CT12CN12 cl11ct12cn12 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:40;
ESTS:mgns001aB06f.b,mgns00
Length = 1650
Score = 28.2 bits (14), Expect = 0.91
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 198 agggcaaggtcacc 211
||||||||||||||
Sbjct: 1481 agggcaaggtcacc 1494
>MGNS013DF09F.B mgns013dF09f.b LENGTH:462bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 462
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 7 tcccttcaaggac 19
|||||||||||||
Sbjct: 372 tcccttcaaggac 384
>MGNS013BF08F.B mgns013bF08f.b LENGTH:368bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 368
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 401 aagaccaagaagg 413
|||||||||||||
Sbjct: 120 aagaccaagaagg 132
>MGNS012CE01F.B mgns012cE01f.b LENGTH:380bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 380
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 142 ctacgtcgatgag 154
|||||||||||||
Sbjct: 365 ctacgtcgatgag 377
>MGNS012AA07F.B mgns012aA07f.b LENGTH:440bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 440
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 230 cccaagatcttcc 242
|||||||||||||
Sbjct: 183 cccaagatcttcc 195
>MGNS011AF02F.B mgns011aF02f.b LENGTH:434bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 434
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 5 gttcccttcaagg 17
|||||||||||||
Sbjct: 220 gttcccttcaagg 232
>MGNS010CC11F.B mgns010cC11f.b LENGTH:395bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 395
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 479 aacctcgacgccg 491
|||||||||||||
Sbjct: 308 aacctcgacgccg 320
>MGNS010AB08F.B mgns010aB08f.b LENGTH:494bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 494
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 130 tgagctcaagggc 142
|||||||||||||
Sbjct: 258 tgagctcaagggc 270
>MGNS010AB04F.B mgns010aB04f.b LENGTH:505bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 505
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 470 cagaaccagaacc 482
|||||||||||||
Sbjct: 167 cagaaccagaacc 155
>MGNS009AD09F.B mgns009aD09f.b LENGTH:420bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 420
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 199 gggcaaggtcacc 211
|||||||||||||
Sbjct: 295 gggcaaggtcacc 307
>MGNS007AD10F.B mgns007aD10f.b LENGTH:503bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 503
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 394 cttcctcaagacc 406
|||||||||||||
Sbjct: 273 cttcctcaagacc 285
>MGNS007AC06F.B mgns007aC06f.b LENGTH:337bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 337
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 197 gagggcaaggtca 209
|||||||||||||
Sbjct: 172 gagggcaaggtca 184
>MGNS002CH11F.B mgns002cH11f.b LENGTH:419bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 419
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 400 caagaccaagaag 412
|||||||||||||
Sbjct: 199 caagaccaagaag 211
>CL85CT95CN99 cl85ct95cn99 COVERAGE:0.95; CRAWID: 1; TOTAL_ESTS:2;
ESTS:mgns001dA08f.b,mgns011
Length = 514
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 441 tcgaggacaacgc 453
|||||||||||||
Sbjct: 383 tcgaggacaacgc 395
>CL65CT73CN76 cl65ct73cn76 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:6;
ESTS:mgns001cA09f.b,mgns002
Length = 498
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 466 ggtccagaaccag 478
|||||||||||||
Sbjct: 255 ggtccagaaccag 267
>CL263CT275CN281 cl263ct275cn281 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns010bF01f.b,mgns0
Length = 541
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 145 cgtcgatgagttg 157
|||||||||||||
Sbjct: 317 cgtcgatgagttg 305
>CL258CT270CN276 cl258ct270cn276 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns010aE10f.b,mgns
Length = 768
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 482 ctcgacgccgaga 494
|||||||||||||
Sbjct: 622 ctcgacgccgaga 634
>CL243CT255CN261 cl243ct255cn261 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns009bA11f.b,mgns
Length = 367
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 13 caaggactccaag 25
|||||||||||||
Sbjct: 106 caaggactccaag 118
>CL235CT247CN253 cl235ct247cn253 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgns008cD11f.b,mgns
Length = 537
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 66 gcgagattgagga 78
|||||||||||||
Sbjct: 456 gcgagattgagga 468
>CL1CT1CN1 cl1ct1cn1 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:2;
ESTS:mgns001aA01f.b,mgns007dE0
Length = 891
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 394 cttcctcaagacc 406
|||||||||||||
Sbjct: 34 cttcctcaagacc 46
>CL199CT210CN216 cl199ct210cn216 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns007bC10f.b,mgns
Length = 493
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 311 tctgaggagctcg 323
|||||||||||||
Sbjct: 232 tctgaggagctcg 244
>CL157CT168CN174 cl157ct168cn174 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgns004aA01f.b,mgns0
Length = 453
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 406 caagaagggcgag 418
|||||||||||||
Sbjct: 33 caagaagggcgag 45
Database: /phillip/Ncr/MgrN_SP
Posted date: Feb 18, 2002 5:07 PM
Number of letters in database: 496,015
Number of sequences in database: 1206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 238
Number of Sequences: 1206
Number of extensions: 238
Number of successful extensions: 76
Number of sequences better than 10.0: 32
length of query: 619
length of database: 496,015
effective HSP length: 14
effective length of query: 605
effective length of database: 479,131
effective search space: 289874255
effective search space used: 289874255
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)