BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNT3/stackpack/blast_Mgr-N/FgrNT3_0_E19.seq
(293 letters)
Database: /phillip/Ncr/MgrN_SP
1206 sequences; 496,015 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGNS008DC09F.B mgns008dC09f.b LENGTH:515bp ; DIRECTION:0 ; CLONE... 30 0.11
CL250CT262CN268 cl250ct262cn268 COVERAGE:0.99; CRAWID: 1; TOTAL_... 28 0.42
MGNS010CB04F.B mgns010cB04f.b LENGTH:490bp ; DIRECTION:0 ; CLONE... 26 1.7
MGNS010AA01F.B mgns010aA01f.b LENGTH:521bp ; DIRECTION:0 ; CLONE... 26 1.7
MGNS001CD12F.B mgns001cD12f.b LENGTH:333bp ; DIRECTION:0 ; CLONE... 26 1.7
CL198CT209CN215 cl198ct209cn215 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 1.7
MGNS013DA11F.B mgns013dA11f.b LENGTH:496bp ; DIRECTION:0 ; CLONE... 24 6.6
MGNS013BD09F.B mgns013bD09f.b LENGTH:350bp ; DIRECTION:0 ; CLONE... 24 6.6
MGNS012CD10F.B mgns012cD10f.b LENGTH:368bp ; DIRECTION:0 ; CLONE... 24 6.6
MGNS011CD08F.B mgns011cD08f.b LENGTH:349bp ; DIRECTION:0 ; CLONE... 24 6.6
MGNS009DC04F.B mgns009dC04f.b LENGTH:470bp ; DIRECTION:0 ; CLONE... 24 6.6
MGNS009CB11F.B mgns009cB11f.b LENGTH:436bp ; DIRECTION:0 ; CLONE... 24 6.6
MGNS008CG02F.B mgns008cG02f.b LENGTH:540bp ; DIRECTION:0 ; CLONE... 24 6.6
MGNS008BB02F.B mgns008bB02f.b LENGTH:399bp ; DIRECTION:0 ; CLONE... 24 6.6
MGNS008AE08F.B mgns008aE08f.b LENGTH:340bp ; DIRECTION:0 ; CLONE... 24 6.6
MGNS007CE07F.B mgns007cE07f.b LENGTH:399bp ; DIRECTION:0 ; CLONE... 24 6.6
MGNS001DE02F.B mgns001dE02f.b LENGTH:418bp ; DIRECTION:0 ; CLONE... 24 6.6
MGNS001AH04F.B mgns001aH04f.b LENGTH:276bp ; DIRECTION:0 ; CLONE... 24 6.6
MGNS001AC10F.B mgns001aC10f.b LENGTH:206bp ; DIRECTION:0 ; CLONE... 24 6.6
CL53CT60CN63 cl53ct60cn63 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:3... 24 6.6
CL47CT54CN57 cl47ct54cn57 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:8... 24 6.6
CL31CT37CN40 cl31ct37cn40 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:2... 24 6.6
CL270CT282CN289 cl270ct282cn289 COVERAGE:0.97; CRAWID: 1; TOTAL_... 24 6.6
>MGNS008DC09F.B mgns008dC09f.b LENGTH:515bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 515
Score = 30.2 bits (15), Expect = 0.11
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 65 acgcccacaagatgcccga 83
||||| |||||||||||||
Sbjct: 459 acgccgacaagatgcccga 477
Score = 24.3 bits (12), Expect = 6.6
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 97 tggtacttttac 108
||||||||||||
Sbjct: 136 tggtacttttac 147
>CL250CT262CN268 cl250ct262cn268 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns009cC10f.b,mgns
Length = 423
Score = 28.2 bits (14), Expect = 0.42
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 63 gcacgcccacaaga 76
||||||||||||||
Sbjct: 141 gcacgcccacaaga 154
>MGNS010CB04F.B mgns010cB04f.b LENGTH:490bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 490
Score = 26.3 bits (13), Expect = 1.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 107 accacaagagcaa 119
|||||||||||||
Sbjct: 49 accacaagagcaa 61
>MGNS010AA01F.B mgns010aA01f.b LENGTH:521bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 521
Score = 26.3 bits (13), Expect = 1.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 148 cgtgagggcttcc 160
|||||||||||||
Sbjct: 375 cgtgagggcttcc 387
>MGNS001CD12F.B mgns001cD12f.b LENGTH:333bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 333
Score = 26.3 bits (13), Expect = 1.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 167 ggttcaagacagg 179
|||||||||||||
Sbjct: 38 ggttcaagacagg 26
>CL198CT209CN215 cl198ct209cn215 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgns007bC03f.b,mgns
Length = 489
Score = 26.3 bits (13), Expect = 1.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 252 caccacgatagtc 264
|||||||||||||
Sbjct: 103 caccacgatagtc 115
>MGNS013DA11F.B mgns013dA11f.b LENGTH:496bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 496
Score = 24.3 bits (12), Expect = 6.6
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 56 gggccgagcacg 67
||||||||||||
Sbjct: 412 gggccgagcacg 423
>MGNS013BD09F.B mgns013bD09f.b LENGTH:350bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 350
Score = 24.3 bits (12), Expect = 6.6
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 198 cttgtcgctcga 209
||||||||||||
Sbjct: 96 cttgtcgctcga 85
>MGNS012CD10F.B mgns012cD10f.b LENGTH:368bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 368
Score = 24.3 bits (12), Expect = 6.6
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 66 cgcccacaagat 77
||||||||||||
Sbjct: 274 cgcccacaagat 285
>MGNS011CD08F.B mgns011cD08f.b LENGTH:349bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 349
Score = 24.3 bits (12), Expect = 6.6
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 38 tggcgcagctgc 49
||||||||||||
Sbjct: 249 tggcgcagctgc 238
>MGNS009DC04F.B mgns009dC04f.b LENGTH:470bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 470
Score = 24.3 bits (12), Expect = 6.6
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 97 tggtacttttac 108
||||||||||||
Sbjct: 111 tggtacttttac 122
>MGNS009CB11F.B mgns009cB11f.b LENGTH:436bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 436
Score = 24.3 bits (12), Expect = 6.6
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 117 caagaactacca 128
||||||||||||
Sbjct: 352 caagaactacca 363
>MGNS008CG02F.B mgns008cG02f.b LENGTH:540bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 540
Score = 24.3 bits (12), Expect = 6.6
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 134 tgcagggcggca 145
||||||||||||
Sbjct: 220 tgcagggcggca 209
>MGNS008BB02F.B mgns008bB02f.b LENGTH:399bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 399
Score = 24.3 bits (12), Expect = 6.6
Identities = 15/16 (93%)
Strand = Plus / Minus
Query: 147 ccgtgagggcttccgc 162
||||||||||| ||||
Sbjct: 244 ccgtgagggctgccgc 229
>MGNS008AE08F.B mgns008aE08f.b LENGTH:340bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 340
Score = 24.3 bits (12), Expect = 6.6
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 67 gcccacaagatg 78
||||||||||||
Sbjct: 114 gcccacaagatg 125
>MGNS007CE07F.B mgns007cE07f.b LENGTH:399bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 399
Score = 24.3 bits (12), Expect = 6.6
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 262 gtcacgcttaca 273
||||||||||||
Sbjct: 19 gtcacgcttaca 8
>MGNS001DE02F.B mgns001dE02f.b LENGTH:418bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 418
Score = 24.3 bits (12), Expect = 6.6
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 192 gttggccttgtc 203
||||||||||||
Sbjct: 252 gttggccttgtc 263
>MGNS001AH04F.B mgns001aH04f.b LENGTH:276bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 276
Score = 24.3 bits (12), Expect = 6.6
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 182 tctggagcctgt 193
||||||||||||
Sbjct: 171 tctggagcctgt 160
>MGNS001AC10F.B mgns001aC10f.b LENGTH:206bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 206
Score = 24.3 bits (12), Expect = 6.6
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 40 gcgcagctgcgg 51
||||||||||||
Sbjct: 182 gcgcagctgcgg 171
>CL53CT60CN63 cl53ct60cn63 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:3;
ESTS:mgns001bE09f.b,mgns001
Length = 680
Score = 24.3 bits (12), Expect = 6.6
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 63 gcacgcccacaa 74
||||||||||||
Sbjct: 549 gcacgcccacaa 560
>CL47CT54CN57 cl47ct54cn57 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:8;
ESTS:mgns001bD07f.b,mgns001
Length = 1024
Score = 24.3 bits (12), Expect = 6.6
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 248 tttccaccacga 259
||||||||||||
Sbjct: 633 tttccaccacga 622
>CL31CT37CN40 cl31ct37cn40 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:2;
ESTS:mgns001aG10f.b,mgns002
Length = 509
Score = 24.3 bits (12), Expect = 6.6
Identities = 15/16 (93%)
Strand = Plus / Plus
Query: 244 atgttttccaccacga 259
|||| |||||||||||
Sbjct: 116 atgtcttccaccacga 131
>CL270CT282CN289 cl270ct282cn289 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns011bG01f.b,mgns
Length = 559
Score = 24.3 bits (12), Expect = 6.6
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 101 acttttaccaca 112
||||||||||||
Sbjct: 94 acttttaccaca 83
Database: /phillip/Ncr/MgrN_SP
Posted date: Feb 18, 2002 5:07 PM
Number of letters in database: 496,015
Number of sequences in database: 1206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 82
Number of Sequences: 1206
Number of extensions: 82
Number of successful extensions: 25
Number of sequences better than 10.0: 24
length of query: 293
length of database: 496,015
effective HSP length: 13
effective length of query: 280
effective length of database: 480,337
effective search space: 134494360
effective search space used: 134494360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 12 (24.3 bits)