The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FgrNT3_0_E21.seq Fgr_0_E21 LENGTH:366bp ; DIRECTION:5 ;
CLONE:Fgr_0_E21 ; CLONELIB: n/a ; TISSUE:
(366 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
907,641 sequences; 284,333,007 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_594839.1| (NC_003424) 60s ribosomal protein l24-3 (L... 160 2e-39
ref|NP_013109.1| (NC_001144) Ribosomal Like Protein 24; Rlp... 154 2e-37
gb|AAH03885.1|AAH03885 (BC003885) Similar to 60S ribosomal ... 148 1e-35
gb|AAH16312.1|AAH16312 (BC016312) 60S ribosomal protein L30... 147 2e-35
ref|NP_057388.1| (NM_016304) ribosomal protein L24-like; my... 147 2e-35
gb|AAH05344.1|AAH05344 (BC005344) 60S ribosomal protein L30... 147 2e-35
gb|AAH08499.1|AAH08499 (BC008499) 60S ribosomal protein L30... 145 8e-35
gb|AAH14576.1|AAH14576 (BC014576) 60S ribosomal protein L30... 145 1e-34
ref|NP_182013.1| (NM_130050) 60S ribosomal protein L30 [Ara... 138 1e-32
ref|XP_082462.1| (XM_082462) similar to CG6764 gene product... 130 3e-30
ref|XP_064936.1| (XM_064936) similar to zinc finger protein... 125 8e-29
ref|XP_064661.1| (XM_064661) similar to 60S ribosomal prote... 121 1e-27
ref|NP_492572.1| (NM_060171) ribosomal protein [Caenorhabdi... 117 2e-26
dbj|BAB32973.1| (AP002970) putative ribosomal protein [Oryz... 107 2e-23
ref|NP_584606.1| (NC_003229) 60S RIBOSOMAL PROTEIN L24 [Enc... 102 8e-22
ref|XP_069538.1| (XM_069538) similar to 60S ribosomal prote... 95 2e-19
ref|XP_092441.1| (XM_092441) hypothetical protein XP_092441... 93 6e-19
ref|XP_095046.1| (XM_095046) hypothetical protein XP_095046... 87 3e-17
ref|XP_064741.1| (XM_064741) similar to 60S ribosomal prote... 76 8e-14
gb|AAG13986.1|AF298827_1 (AF298827) 60S ribosomal protein L... 69 7e-12
ref|NP_190870.1| (NM_115162) 60S ribosomal protein - like [... 69 9e-12
sp|P50888|RL24_HORVU 60S RIBOSOMAL PROTEIN L24 >gi|7440778|... 69 9e-12
ref|NP_565851.1| (NM_129217) 60S ribosomal protein L24 [Ara... 68 2e-11
sp|P38666|RL24_ARATH 60S RIBOSOMAL PROTEIN L24 68 2e-11
sp|O65743|RL24_CICAR 60S ribosomal protein L24 >gi|2961300|... 68 2e-11
ref|XP_089320.1| (XM_089320) similar to 60S ribosomal prote... 67 3e-11
gb|AAD20138.1| (AC006282) 60S ribosomal protein L24 [Arabid... 67 4e-11
ref|NP_126359.1| (NC_000868) LSU ribosomal protein L24E [Py... 66 6e-11
ref|NP_579098.1| (NC_003413) LSU ribosomal protein L24E; (r... 65 1e-10
ref|NP_143358.1| (NC_000961) S ribosomal protein L24E [Pyro... 65 2e-10
ref|NP_011664.1| (NC_001139) Homology to rat L24; Rpl24bp [... 62 1e-09
ref|NP_011484.1| (NC_001139) Homology to rat L24; Rpl24ap [... 61 2e-09
ref|NP_248196.1| (NC_000909) LSU ribosomal protein L24E [Me... 60 3e-09
ref|NP_587714.1| (NC_003421) 60s ribosomal protein L24 [Sch... 60 4e-09
ref|NP_594118.1| (NC_003424) 60S ribosomal protein L24 [Sch... 60 4e-09
ref|NP_069600.1| (NC_000917) LSU ribosomal protein L24E (rp... 59 7e-09
gb|AAK95151.1|AF401579_1 (AF401579) ribosomal protein L24 [... 58 2e-08
gb|AAG13295.1|AF266175_1 (AF266175) 60S ribosomal protein L... 58 2e-08
ref|NP_376140.1| (NC_003106) 61aa long hypothetical 50S rib... 57 4e-08
ref|XP_016822.2| (XM_016822) similar to ribosomal protein L... 57 4e-08
ref|NP_000977.1| (NM_000986) ribosomal protein L24; 60S rib... 57 5e-08
ref|XP_079782.1| (XM_079782) CG9282 [Drosophila melanogaste... 56 6e-08
dbj|BAB31605.1| (AK019214) data source:SPTR, source key:P38... 55 1e-07
gb|AAK92161.1|AF400189_1 (AF400189) ribosomal protein L24 [... 55 1e-07
sp|P38665|RL24_KLULA 60S RIBOSOMAL PROTEIN L24 (L30) >gi|17... 54 2e-07
ref|NP_148574.1| (NC_000854) 50S ribosomal protein L24 [Aer... 54 4e-07
ref|NP_341782.1| (NC_002754) LSU ribosomal protein L24E (rp... 52 2e-06
ref|XP_088933.1| (XM_088933) hypothetical protein XP_088933... 50 3e-06
ref|NP_560675.1| (NC_003364) ribosomal protein L24 [Pyrobac... 50 4e-06
ref|NP_394573.1| (NC_002578) probable 50S ribosomal protein... 49 1e-05
ref|NP_110970.1| (NC_002689) 50S ribosomal protein L24E [Th... 48 2e-05
ref|NP_275400.1| (NC_000916) ribosomal protein L24 [Methano... 48 2e-05
ref|NP_491399.1| (NM_058998) 60S ribosomal protein L24 [Cae... 46 6e-05
ref|NP_280059.1| (NC_002607) 50S ribosomal protein L24E; Rp... 46 8e-05
ref|NP_113543.1| (NC_002753) 60S ribosomal protein L24 [Gui... 45 1e-04
sp|P14116|R24E_HALMA 50S ribosomal protein L24E (HL21/HL22)... 43 5e-04
gb|AAC63142.1| (AF011787) ribosomal protein L24 [Trypanosom... 43 7e-04
ref|XP_092196.1| (XM_092196) hypothetical protein XP_092196... 37 0.051
ref|XP_092760.1| (XM_092760) hypothetical protein XP_092760... 35 0.15
ref|XP_067274.2| (XM_067274) similar to SALL1 (sal (Drosoph... 35 0.19
ref|XP_063031.1| (XM_063031) hypothetical protein XP_063031... 32 0.96
ref|NP_070505.1| (NC_000917) conserved hypothetical protein... 31 2.8
ref|NP_422465.1| (NC_002696) hypothetical protein [Caulobac... 30 3.7
pir||T06700 hypothetical protein T29H11.60 - Arabidopsis th... 30 3.7
ref|NP_566903.1| (NM_114701) Expressed protein [Arabidopsis... 30 3.7
pir||S21333 hypothetical protein 3 - Agrobacterium tumefaci... 30 3.7
ref|NP_599972.1| (NC_003450) COG1208:Nucleoside-diphosphate... 30 4.8
ref|NP_110160.1| (NC_000912) conserved hypothetical protein... 30 4.8
sp|O97775|ANDR_PANTR Androgen receptor (Dihydrotestosterone... 30 6.2
ref|XP_065896.1| (XM_065896) hypothetical protein XP_065896... 30 6.2
ref|NP_378211.1| (NC_003106) 112aa long hypothetical protei... 30 6.2
emb|CAC42467.1| (AL137119) bA110K18.1 (zinc finger protein ... 29 8.1
pir||T09483 Cys-rich protein RAMP - human >gi|2665703|gb|AA... 29 8.1
ref|NP_003444.1| (NM_003453) zinc finger protein 198; fused... 29 8.1
gb|AAC23591.1| (AF060181) zinc finger protein [Homo sapiens] 29 8.1
ref|XP_065132.2| (XM_065132) hypothetical protein XP_065132... 29 8.1
gb|AAA88541.1| (L76292) 15 kDa protein [Shallot virus X] 29 8.1
pir||T45119 FIM protein [imported] - human >gi|3135792|emb|... 29 8.1
>ref|NP_594839.1| (NC_003424) 60s ribosomal protein l24-3 (L30) [Schizosaccharomyces
pombe]
sp|Q10353|RL24_SCHPO 60S RIBOSOMAL PROTEIN L24 (L30)
pir||T38170 60s ribosomal protein l24-3 (L30) - fission yeast
(Schizosaccharomyces pombe)
emb|CAA93900.1| (Z70043) 60s ribosomal protein l24-3 (L30) [Schizosaccharomyces
pombe]
Length = 192
Score = 160 bits (406), Expect = 2e-39
Identities = 76/108 (70%), Positives = 88/108 (81%), Gaps = 1/108 (0%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
MR+ TCYFCS P YP GI FVRND++VFRFCRSKCHKNFKMKRNP K+ WTKA+RKA G
Sbjct: 1 MRVHTCYFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKAHG 60
Query: 226 KEMTVDSTLQV-AARRNVTVRYDR*LMGKTLNAMERVSQIRERRERVF 366
KEM D+ L V AARRNV VRYDR ++ TLNAM+RVSQ+ +RER+F
Sbjct: 61 KEMVYDTALAVTAARRNVPVRYDRNVIATTLNAMKRVSQVHAKRERLF 108
>ref|NP_013109.1| (NC_001144) Ribosomal Like Protein 24; Rlp24p [Saccharomyces
cerevisiae]
pir||S64831 ribosomal protein L24 homolog YLR009w - yeast (Saccharomyces
cerevisiae)
emb|CAA97531.1| (Z73181) ORF YLR009w [Saccharomyces cerevisiae]
Length = 199
Score = 154 bits (389), Expect = 2e-37
Identities = 73/107 (68%), Positives = 83/107 (77%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
MRI C+FCS P YP GI FVRNDA+ FRFCRSKCHK FK +RNP KLKWTKAFRKA G
Sbjct: 1 MRIYQCHFCSSPCYPGHGIMFVRNDAKEFRFCRSKCHKAFKQRRNPRKLKWTKAFRKAAG 60
Query: 226 KEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAMERVSQIRERRERVF 366
KE+ VDSTL A RRNV VRY+R L+ TL AM R+ +IR++RER F
Sbjct: 61 KELAVDSTLTFAQRRNVPVRYNRELVATTLKAMARIEEIRQKRERAF 107
>gb|AAH03885.1|AAH03885 (BC003885) Similar to 60S ribosomal protein L30 isolog [Mus
musculus]
Length = 163
Score = 148 bits (373), Expect = 1e-35
Identities = 66/107 (61%), Positives = 84/107 (77%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
MRIE CYFCS P YP G+ FVRND +VFRFC+SKCHKNFK KRNP K++WTKAFRKA G
Sbjct: 1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60
Query: 226 KEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAMERVSQIRERRERVF 366
KE+TVD++ + RRN V+Y R L KT++AM+RV +I+++R+ F
Sbjct: 61 KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKF 107
>gb|AAH16312.1|AAH16312 (BC016312) 60S ribosomal protein L30 isolog [Homo sapiens]
Length = 163
Score = 147 bits (372), Expect = 2e-35
Identities = 65/107 (60%), Positives = 84/107 (77%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
MRIE CYFCS P YP G+ FVRND +VFRFC+SKCHKNFK KRNP K++WTKAFRKA G
Sbjct: 1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60
Query: 226 KEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAMERVSQIRERRERVF 366
KE+TVD++ + RRN ++Y R L KT++AM+RV +I+++R+ F
Sbjct: 61 KELTVDNSFEFEKRRNEPIKYQRELRNKTIDAMKRVEEIKQKRQAKF 107
>ref|NP_057388.1| (NM_016304) ribosomal protein L24-like; my024 protein [Homo
sapiens]
ref|XP_046136.1| (XM_046136) 60S ribosomal protein L30 isolog [Homo sapiens]
gb|AAF17241.1|AF201949_1 (AF201949) 60S ribosomal protein L30 isolog [Homo sapiens]
gb|AAF86651.1|AF165521_1 (AF165521) ribosomal protein L30 isolog [Homo sapiens]
gb|AAG43138.1|AF060926_1 (AF060926) My024 protein [Homo sapiens]
gb|AAK26249.1|AF212226_1 (AF212226) RPL24 [Homo sapiens]
gb|AAH08409.1|AAH08409 (BC008409) 60S ribosomal protein L30 isolog [Homo sapiens]
gb|AAH08422.1|AAH08422 (BC008422) 60S ribosomal protein L30 isolog [Homo sapiens]
gb|AAH08449.1|AAH08449 (BC008449) 60S ribosomal protein L30 isolog [Homo sapiens]
gb|AAH12913.1|AAH12913 (BC012913) 60S ribosomal protein L30 isolog [Homo sapiens]
gb|AAH09593.1|AAH09593 (BC009593) 60S ribosomal protein L30 isolog [Homo sapiens]
gb|AAH09604.1|AAH09604 (BC009604) 60S ribosomal protein L30 isolog [Homo sapiens]
gb|AAH16331.1|AAH16331 (BC016331) 60S ribosomal protein L30 isolog [Homo sapiens]
gb|AAH16725.1|AAH16725 (BC016725) 60S ribosomal protein L30 isolog [Homo sapiens]
gb|AAH16777.1|AAH16777 (BC016777) 60S ribosomal protein L30 isolog [Homo sapiens]
Length = 163
Score = 147 bits (372), Expect = 2e-35
Identities = 65/107 (60%), Positives = 84/107 (77%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
MRIE CYFCS P YP G+ FVRND +VFRFC+SKCHKNFK KRNP K++WTKAFRKA G
Sbjct: 1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60
Query: 226 KEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAMERVSQIRERRERVF 366
KE+TVD++ + RRN ++Y R L KT++AM+RV +I+++R+ F
Sbjct: 61 KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKF 107
>gb|AAH05344.1|AAH05344 (BC005344) 60S ribosomal protein L30 isolog [Homo sapiens]
Length = 150
Score = 147 bits (372), Expect = 2e-35
Identities = 65/107 (60%), Positives = 84/107 (77%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
MRIE CYFCS P YP G+ FVRND +VFRFC+SKCHKNFK KRNP K++WTKAFRKA G
Sbjct: 1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60
Query: 226 KEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAMERVSQIRERRERVF 366
KE+TVD++ + RRN ++Y R L KT++AM+RV +I+++R+ F
Sbjct: 61 KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKF 107
>gb|AAH08499.1|AAH08499 (BC008499) 60S ribosomal protein L30 isolog [Homo sapiens]
Length = 163
Score = 145 bits (366), Expect = 8e-35
Identities = 64/107 (59%), Positives = 83/107 (76%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
MRIE CYFCS P YP G+ FVRND +V RFC+SKCHKNFK KRNP K++WTKAFRKA G
Sbjct: 1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVIRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60
Query: 226 KEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAMERVSQIRERRERVF 366
KE+TVD++ + RRN ++Y R L KT++AM+RV +I+++R+ F
Sbjct: 61 KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKF 107
>gb|AAH14576.1|AAH14576 (BC014576) 60S ribosomal protein L30 isolog [Homo sapiens]
Length = 163
Score = 145 bits (365), Expect = 1e-34
Identities = 64/107 (59%), Positives = 83/107 (76%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
MRIE CYFCS P YP G+ FVRND +VF FC+SKCHKNFK KRNP K++WTKAFRKA G
Sbjct: 1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFGFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60
Query: 226 KEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAMERVSQIRERRERVF 366
KE+TVD++ + RRN ++Y R L KT++AM+RV +I+++R+ F
Sbjct: 61 KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKF 107
>ref|NP_182013.1| (NM_130050) 60S ribosomal protein L30 [Arabidopsis thaliana]
pir||T00407 ribosomal protein L24 homolog T13E15.13 - Arabidopsis thaliana
gb|AAC31838.1| (AC002388) 60S ribosomal protein L30 [Arabidopsis thaliana]
gb|AAK83593.1| (AY049251) At2g44860/T13E15.13 [Arabidopsis thaliana]
Length = 159
Score = 138 bits (347), Expect = 1e-32
Identities = 63/104 (60%), Positives = 79/104 (75%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
MR+E C+FCS YP GI FVRNDA++FRFCRSKCHKNFKMKRNP K+KWTKAFR A G
Sbjct: 1 MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60
Query: 226 KEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAMERVSQIRERRE 357
K+MT D+T + +RN RYDR + TL A++++++IR RE
Sbjct: 61 KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTARE 104
>ref|XP_082462.1| (XM_082462) similar to CG6764 gene product (D. melanogaster)
[Drosophila melanogaster]
gb|AAF54637.1| (AE003691) CG6764 gene product [Drosophila melanogaster]
Length = 191
Score = 130 bits (327), Expect = 3e-30
Identities = 58/107 (54%), Positives = 77/107 (71%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
MRI+TCYFCS YP G+ FVRND +VF+FCR KCHK FK K+NP K+ WTKA+RKA G
Sbjct: 1 MRIQTCYFCSSKIYPGHGVQFVRNDCKVFKFCRGKCHKAFKRKKNPRKVGWTKAYRKAAG 60
Query: 226 KEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAMERVSQIRERRERVF 366
KE+ +D + + RRNV ++Y R K L A++RV++I+E+R F
Sbjct: 61 KELAIDPSFEFEKRRNVPMKYSRETWQKGLEAIKRVTEIKEKRTSHF 107
>ref|XP_064936.1| (XM_064936) similar to zinc finger protein 14 (KOX 6); GIOT-4 for
gonadotropin inducible transcription repressor-4 [Homo
sapiens]
Length = 884
Score = 125 bits (314), Expect = 8e-29
Identities = 55/107 (51%), Positives = 76/107 (70%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
M IE CYFC P YP GI F N+ +VFRFC+SKCHKNFK K NP K++WTKAF+KA
Sbjct: 1 MHIEKCYFCLGPIYPGHGIMFFCNNCKVFRFCKSKCHKNFKKKCNPHKVRWTKAFQKATS 60
Query: 226 KEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAMERVSQIRERRERVF 366
KE+TVD++ + RN ++Y + L KT++AM+RV +I+++ + F
Sbjct: 61 KELTVDNSFEFEKHRNELIKYQQELWNKTIDAMKRVEEIKQKWQAKF 107
>ref|XP_064661.1| (XM_064661) similar to 60S ribosomal protein L30 isolog [Homo
sapiens]
Length = 187
Score = 121 bits (304), Expect = 1e-27
Identities = 54/107 (50%), Positives = 76/107 (70%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
MRIE CYFCS P YP + F+ ND +VF FC+SKCHK+FK K NP K++ TK F+KA G
Sbjct: 1 MRIEKCYFCSGPIYPGYDMLFIHNDCKVFGFCKSKCHKHFKKKCNPRKVRRTKPFQKAAG 60
Query: 226 KEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAMERVSQIRERRERVF 366
KE+TVD++ + RN ++Y R L KT++AM+RV +I+++ + F
Sbjct: 61 KELTVDNSFEFDKHRNELIKYQRELWNKTIDAMKRVEEIKQKHQAKF 107
>ref|NP_492572.1| (NM_060171) ribosomal protein [Caenorhabditis elegans]
sp|Q17606|RL24_CAEEL PROBABLE 60S RIBOSOMAL PROTEIN L24
pir||T18884 hypothetical protein C03D6.8 - Caenorhabditis elegans
emb|CAA99764.1| (Z75525) contains similarity to Pfam domain: PF01246 (Ribosomal
protein L24e), Score=109.5, E-value=2.1e-29, N=1~cDNA
EST yk176h7.5 comes from this gene~cDNA EST yk331a1.3
comes from this gene~cDNA EST yk331a1.5 comes from this
gene~cDNA EST yk361d3.3 >
Length = 162
Score = 117 bits (293), Expect = 2e-26
Identities = 54/103 (52%), Positives = 75/103 (72%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
MRIE CYFCS P YP GI FVRND+ VF+FCRS+C+K FK K+NP KL++TKA R+A G
Sbjct: 1 MRIEKCYFCSSPIYPGHGIQFVRNDSTVFKFCRSRCNKLFKKKKNPRKLRFTKAARRARG 60
Query: 226 KEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAMERVSQIRERR 354
KE+ D+T + RR+ V+Y+R + KT+ A + +S ++ +R
Sbjct: 61 KELINDATQLLEQRRDEPVKYERAMFQKTIEAAKTISALKTKR 103
>dbj|BAB32973.1| (AP002970) putative ribosomal protein [Oryza sativa (japonica
cultivar-group)]
Length = 213
Score = 107 bits (267), Expect = 2e-23
Identities = 46/64 (71%), Positives = 53/64 (81%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
MR+E C+FCS YP GI FVRNDA++FRFCRSKCHKNFKMKRNP K+KWTKA+R G
Sbjct: 1 MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRCLHG 60
Query: 226 KEMT 237
K+MT
Sbjct: 61 KDMT 64
>ref|NP_584606.1| (NC_003229) 60S RIBOSOMAL PROTEIN L24 [Encephalitozoon cuniculi]
emb|CAD25110.1| (AL590442) 60S RIBOSOMAL PROTEIN L24 [Encephalitozoon cuniculi]
Length = 155
Score = 102 bits (254), Expect = 8e-22
Identities = 52/107 (48%), Positives = 66/107 (61%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
MRIE C+FCS Y G +VRNDA+VFRFCR KC K F + NP K+KWTK RK
Sbjct: 1 MRIEKCWFCSSNIYQGHGTIYVRNDAKVFRFCRPKCRKLFARRVNPRKVKWTKISRKMAN 60
Query: 226 KEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAMERVSQIRERRERVF 366
KE+ D+ L R N YDR +TL+++ R+ +IR+RRE F
Sbjct: 61 KELCNDAILTFEHRLNEPRMYDRAEAERTLSSIPRILEIRKRREDFF 107
>ref|XP_069538.1| (XM_069538) similar to 60S ribosomal protein L30 isolog [Homo
sapiens]
Length = 150
Score = 94.7 bits (234), Expect = 2e-19
Identities = 44/107 (41%), Positives = 67/107 (62%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
M IE CYFCS P YP G+ FV N+ ++FRFC+SK +W KAF+ A G
Sbjct: 1 MCIEKCYFCSGPIYPGHGMMFVHNNCKLFRFCKSKS-------------RWIKAFQNAAG 47
Query: 226 KEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAMERVSQIRERRERVF 366
KE+TVD++ + RRN ++Y R L KT++AM+++ +I+++ + F
Sbjct: 48 KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKQIEEIKQKCQAKF 94
>ref|XP_092441.1| (XM_092441) hypothetical protein XP_092441 [Homo sapiens]
Length = 184
Score = 92.8 bits (229), Expect = 6e-19
Identities = 42/70 (60%), Positives = 51/70 (72%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
M IE CYFCS YP + FV+N+ +VFRFC SK HKNFK KRNP K+ WTKAF KA
Sbjct: 1 MCIEKCYFCSGSIYPGHSMMFVQNNCKVFRFCNSKYHKNFKKKRNPRKVGWTKAFWKAAD 60
Query: 226 KEMTVDSTLQ 255
KE+TVD++ +
Sbjct: 61 KELTVDNSFE 70
>ref|XP_095046.1| (XM_095046) hypothetical protein XP_095046 [Homo sapiens]
Length = 109
Score = 87.0 bits (214), Expect = 3e-17
Identities = 37/66 (56%), Positives = 44/66 (66%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
M +E CYFC P YP G+ F+RND +VFRF +SKCHKNFK K NP K++WTKAF
Sbjct: 1 MHVEICYFCLGPTYPGHGMMFIRNDCKVFRFRKSKCHKNFKKKCNPRKIRWTKAFHSESS 60
Query: 226 KEMTVD 243
M D
Sbjct: 61 WVMPSD 66
>ref|XP_064741.1| (XM_064741) similar to 60S ribosomal protein L30 isolog [Homo
sapiens]
Length = 366
Score = 75.9 bits (185), Expect = 8e-14
Identities = 32/55 (58%), Positives = 42/55 (76%)
Frame = +1
Query: 124 RVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADGKEMTVDSTLQVAARRNVTVRY 288
+VFRFC+SKCHKNFK K NP K++WTKAF+KA G+E+TVD + + RN + Y
Sbjct: 311 KVFRFCKSKCHKNFKKKCNPRKVRWTKAFQKAAGEELTVDHSFEFEKHRNEPITY 365
>gb|AAG13986.1|AF298827_1 (AF298827) 60S ribosomal protein L24 [Prunus avium]
Length = 186
Score = 69.3 bits (168), Expect = 7e-12
Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 14/120 (11%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
++ E C F YP KGI F+R+D++VF F SKC + F + P KL WT +RK
Sbjct: 3 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHK 62
Query: 226 KEMTVDSTLQVAARRNVTVR-YDR*LMGKTLNAME-------------RVSQIRERRERV 363
K++ ++ V RR T + Y R ++G TL ++ R + +RE +ER+
Sbjct: 63 KDIAQEA---VKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERI 119
>ref|NP_190870.1| (NM_115162) 60S ribosomal protein - like [Arabidopsis thaliana]
pir||T47559 60S ribosomal protein-like - Arabidopsis thaliana
emb|CAB86906.1| (AL132969) 60S ribosomal protein-like [Arabidopsis thaliana]
gb|AAL25545.1| (AY058129) AT3g53020/F8J2_190 [Arabidopsis thaliana]
Length = 163
Score = 68.9 bits (167), Expect = 9e-12
Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 14/120 (11%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
++ E C F + YP +GI F+R+D++VF F SKC + F K P KL WT +RK
Sbjct: 3 LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHK 62
Query: 226 KEMTVDSTLQVAARRNVTVR-YDR*LMGKTLNAME-------------RVSQIRERRERV 363
K+ ++ V RR T + Y R ++G TL ++ R + +RE +ER+
Sbjct: 63 KDAAQEA---VKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERI 119
>sp|P50888|RL24_HORVU 60S RIBOSOMAL PROTEIN L24
pir||T06178 ribosomal protein L24 - barley
emb|CAA63960.1| (X94296) L24 ribosomal protein [Hordeum vulgare]
Length = 162
Score = 68.9 bits (167), Expect = 9e-12
Identities = 38/119 (31%), Positives = 61/119 (50%), Gaps = 13/119 (10%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
++ E C F + YP KGI F+R+D++VF F SKC + F + P KL WT +RK
Sbjct: 3 LKTELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQHK 62
Query: 226 KEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAME-------------RVSQIRERRERV 363
K++ ++ + RR Y R ++G TL ++ R + +RE +ER+
Sbjct: 63 KDIHAEAAKK--RRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERI 119
>ref|NP_565851.1| (NM_129217) 60S ribosomal protein L24 [Arabidopsis thaliana]
emb|CAC01930.1| (AJ293729) 60S ribosomal protein L24 (RL24) [Arabidopsis thaliana]
gb|AAL24194.1| (AY058086) At2g36620/F1O11.25 [Arabidopsis thaliana]
gb|AAL62342.1| (AY072350) 60S ribosomal protein L24 [Arabidopsis thaliana]
Length = 164
Score = 68.2 bits (165), Expect = 2e-11
Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 14/120 (11%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
++ E C F + YP +GI F+R+D++VF F SKC + F K P KL WT +RK
Sbjct: 3 LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHK 62
Query: 226 KEMTVDSTLQVAARRNVTVR-YDR*LMGKTLNAME-------------RVSQIRERRERV 363
K+ ++ V RR T + Y R ++G TL ++ R + +RE +ER+
Sbjct: 63 KDAAQEA---VKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERI 119
>sp|P38666|RL24_ARATH 60S RIBOSOMAL PROTEIN L24
Length = 163
Score = 67.8 bits (164), Expect = 2e-11
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 15/121 (12%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
++ E C F + YP +GI F+R+D++VF F SKC + F K P KL WT +RK
Sbjct: 3 LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLXPSKLAWTAIYRKQHK 62
Query: 226 KEMTVDSTLQVAARRNVTVR--YDR*LMGKTLNAME-------------RVSQIRERRER 360
K D+ + RR + Y R ++G TL ++ R + +RE +ER
Sbjct: 63 K----DAAQEAVKRRRXXTKXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREXKER 118
Query: 361 V 363
+
Sbjct: 119 I 119
>sp|O65743|RL24_CICAR 60S ribosomal protein L24
emb|CAA12358.1| (AJ225027) ribosomal protein L24 [Cicer arietinum]
Length = 164
Score = 67.8 bits (164), Expect = 2e-11
Identities = 40/120 (33%), Positives = 60/120 (49%), Gaps = 14/120 (11%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
++ E C F YP +GI F+R D++VF F SKC + F + P KL WT FRK
Sbjct: 3 LKTELCRFSGAKIYPGRGIRFIRGDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQHK 62
Query: 226 KEMTVDSTLQVAARRNVTVR-YDR*LMGKTLNAME-------------RVSQIRERRERV 363
K+ ++ V RR T + Y R ++G TL ++ R + +RE +ER+
Sbjct: 63 KDAAQEA---VKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERI 119
>ref|XP_089320.1| (XM_089320) similar to 60S ribosomal protein L30 isolog [Homo
sapiens]
Length = 190
Score = 67.4 bits (163), Expect = 3e-11
Identities = 38/110 (34%), Positives = 52/110 (46%)
Frame = +1
Query: 28 DHHPYKMRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKA 207
D + I+ YFC P YP GITF+RND +VFRFC+SK HK K + NP K
Sbjct: 45 DPRGFNTCIKKHYFCLGPIYPGHGITFIRNDCKVFRFCKSKRHKKVKKQHNPCK------ 98
Query: 208 FRKADGKEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAMERVSQIRERRE 357
R L KT++AM+RV +I+++R+
Sbjct: 99 ----------------------------RDLWNKTIDAMKRVEEIKQKRQ 120
>gb|AAD20138.1| (AC006282) 60S ribosomal protein L24 [Arabidopsis thaliana]
Length = 177
Score = 67.0 bits (162), Expect = 4e-11
Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Frame = +1
Query: 55 ETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADGKEM 234
E C F + YP +GI F+R+D++VF F SKC + F K P KL WT +RK K+
Sbjct: 19 ELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKDA 78
Query: 235 TVDSTLQVAARRNVTVR-YDR*LMGKTLNAME-------------RVSQIRERRERV 363
++ V RR T + Y R ++G TL ++ R + +RE +ER+
Sbjct: 79 AQEA---VKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERI 132
>ref|NP_126359.1| (NC_000868) LSU ribosomal protein L24E [Pyrococcus abyssi]
pir||E75109 lsu ribosomal protein l24e (rpl24e) PAB8165 - Pyrococcus abyssi
(strain Orsay)
emb|CAB49590.1| (AJ248285) LSU ribosomal protein L24E (rpl24E) [Pyrococcus abyssi]
Length = 67
Score = 66.2 bits (160), Expect = 6e-11
Identities = 29/57 (50%), Positives = 36/57 (62%)
Frame = +1
Query: 49 RIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKA 219
R C +C +P P G FVRND RV FC KC + + M RNP KLKWTKA+++A
Sbjct: 3 RWNVCSYCGKPFEPGTGKMFVRNDGRVLFFCSRKCERYYFMGRNPRKLKWTKAYQEA 59
>ref|NP_579098.1| (NC_003413) LSU ribosomal protein L24E; (rpl24E) [Pyrococcus
furiosus DSM 3638]
gb|AAL81493.1| (AE010241) LSU ribosomal protein L24E; (rpl24E) [Pyrococcus
furiosus DSM 3638]
Length = 66
Score = 65.1 bits (157), Expect = 1e-10
Identities = 28/57 (49%), Positives = 36/57 (63%)
Frame = +1
Query: 49 RIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKA 219
R C +C +P P G +VRND RV FC KC + + M RNP KLKWTKA+++A
Sbjct: 3 RWNVCSYCGKPFEPGTGKMYVRNDGRVLFFCSRKCERYYFMGRNPRKLKWTKAYQEA 59
>ref|NP_143358.1| (NC_000961) S ribosomal protein L24E [Pyrococcus horikoshii]
Length = 66
Score = 64.7 bits (156), Expect = 2e-10
Identities = 28/57 (49%), Positives = 36/57 (63%)
Frame = +1
Query: 49 RIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKA 219
R C +C +P P G +VRND RV FC KC + + M RNP KLKWTKA+++A
Sbjct: 3 RWNICSYCGKPFEPGTGKMYVRNDGRVLFFCSRKCERYYFMGRNPRKLKWTKAYQEA 59
>ref|NP_011664.1| (NC_001139) Homology to rat L24; Rpl24bp [Saccharomyces cerevisiae]
sp|P24000|R24B_YEAST 60S RIBOSOMAL PROTEIN L24-B (L30B) (RP29) (YL21)
pir||R6BYY0 ribosomal protein L24.e.B, cytosolic - yeast (Saccharomyces
cerevisiae)
gb|AAA34736.1| (M34387) ribosomal protein L30 (RPL30B), (3' end of exon not
determined) [Saccharomyces cerevisiae]
emb|CAA59806.1| (X85807) ORF G6635 [Saccharomyces cerevisiae]
emb|CAA97162.1| (Z72933) ORF YGR148c [Saccharomyces cerevisiae]
Length = 155
Score = 61.6 bits (148), Expect = 1e-09
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
M++E F YP +G FVR D+++FRF SK FK ++NP ++ WT FRK
Sbjct: 1 MKVEVDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHK 60
Query: 226 KEMTVDSTLQVAARRN-VTVRYDR*LMGKTLNAMERVSQIRERR 354
K +T +VA +R+ TV+ R + G +L+ I+ERR
Sbjct: 61 KGITE----EVAKKRSRKTVKAQRPITGASLDL------IKERR 94
>ref|NP_011484.1| (NC_001139) Homology to rat L24; Rpl24ap [Saccharomyces cerevisiae]
sp|P04449|R24A_YEAST 60S RIBOSOMAL PROTEIN L24-A (L30A) (RP29) (YL21)
pir||R6BYT9 ribosomal protein L24.e.A, cytosolic - yeast (Saccharomyces
cerevisiae)
gb|AAA35004.1| (K02650) ribosomal protein L30A [Saccharomyces cerevisiae]
emb|CAA96732.1| (Z72553) ORF YGL031c [Saccharomyces cerevisiae]
Length = 155
Score = 61.2 bits (147), Expect = 2e-09
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
M++E F YP +G FVR D+++FRF SK FK ++NP ++ WT FRK
Sbjct: 1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHK 60
Query: 226 KEMTVDSTLQVAARRN-VTVRYDR*LMGKTLNAMERVSQIRERR 354
K +T +VA +R+ TV+ R + G +L+ I+ERR
Sbjct: 61 KGITE----EVAKKRSRKTVKAQRPITGASLDL------IKERR 94
>ref|NP_248196.1| (NC_000909) LSU ribosomal protein L24E [Methanococcus jannaschii]
sp|P54064|R24E_METJA 50S ribosomal protein L24E
pir||H64449 ribosomal protein L24E - Methanococcus jannaschii
gb|AAB99205.1| (U67562) LSU ribosomal protein L24E [Methanococcus jannaschii]
Length = 70
Score = 60.5 bits (145), Expect = 3e-09
Identities = 26/52 (50%), Positives = 31/52 (59%)
Frame = +1
Query: 58 TCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFR 213
TC FC P KG V D V FC SKC K+++M RNP KLKWTK ++
Sbjct: 6 TCSFCGYEIEPGKGKMVVEKDGTVLYFCSSKCEKSYRMGRNPRKLKWTKVYQ 57
>ref|NP_587714.1| (NC_003421) 60s ribosomal protein L24 [Schizosaccharomyces pombe]
pir||T41324 60s ribosomal protein L24 - fission yeast (Schizosaccharomyces
pombe)
emb|CAA20919.1| (AL031603) 60s ribosomal protein L24 [Schizosaccharomyces pombe]
dbj|BAA84653.1| (AB032714) rpl24 [Schizosaccharomyces pombe]
Length = 149
Score = 60.1 bits (144), Expect = 4e-09
Identities = 30/94 (31%), Positives = 48/94 (50%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
M++E C F YP G FVR D +VFRF K F ++NP +L WT +R+
Sbjct: 1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHK 60
Query: 226 KEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAME 327
K ++ + R TV++ R ++G L+ ++
Sbjct: 61 KGISEE---HAKKRTRRTVKHQRGIVGANLDVIK 91
>ref|NP_594118.1| (NC_003424) 60S ribosomal protein L24 [Schizosaccharomyces pombe]
pir||T39071 60S ribosomal protein L24 - fission yeast (Schizosaccharomyces
pombe)
emb|CAB03611.1| (Z81317) 60S ribosomal protein L24 [Schizosaccharomyces pombe]
Length = 149
Score = 60.1 bits (144), Expect = 4e-09
Identities = 30/94 (31%), Positives = 48/94 (50%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
M++E C F YP G FVR D +VFRF K F ++NP +L WT +R+
Sbjct: 1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHK 60
Query: 226 KEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAME 327
K ++ + R TV++ R ++G L+ ++
Sbjct: 61 KGISEE---HAKKRTRRTVKHQRGIVGANLDVIK 91
>ref|NP_069600.1| (NC_000917) LSU ribosomal protein L24E (rpl24E) [Archaeoglobus
fulgidus]
sp|O29492|R24E_ARCFU 50S ribosomal protein L24E
pir||F69345 LSU ribosomal protein L24E (rpl24E) homolog - Archaeoglobus
fulgidus
gb|AAB90471.1| (AE001051) LSU ribosomal protein L24E (rpl24E) [Archaeoglobus
fulgidus]
Length = 58
Score = 59.3 bits (142), Expect = 7e-09
Identities = 28/58 (48%), Positives = 32/58 (54%), Gaps = 1/58 (1%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKN-FKMKRNPFKLKWTKAFRK 216
M C FC P G +VR D RVF FC KC KN K+KR P KLKWTK + +
Sbjct: 1 MEKRVCSFCGYDIEPGTGKMYVRRDGRVFYFCSGKCEKNMLKLKRKPRKLKWTKHYSR 58
>gb|AAK95151.1|AF401579_1 (AF401579) ribosomal protein L24 [Ictalurus punctatus]
Length = 157
Score = 58.2 bits (139), Expect = 2e-08
Identities = 29/90 (32%), Positives = 46/90 (50%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
M++E C F YP G + R D +VF+F +KC F KRNP ++ WT +R+
Sbjct: 1 MKVELCSFSGYKIYPGHGPVYARIDGKVFQFLNAKCESAFLTKRNPRQINWTVLYRRKHK 60
Query: 226 KEMTVDSTLQVAARRNVTVRYDR*LMGKTL 315
K + + T + R V++ R + G +L
Sbjct: 61 KGQSEEVTKK---RTRRAVKFQRAITGASL 87
>gb|AAG13295.1|AF266175_1 (AF266175) 60S ribosomal protein L24 [Gillichthys mirabilis]
Length = 156
Score = 57.8 bits (138), Expect = 2e-08
Identities = 29/90 (32%), Positives = 46/90 (50%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
M++E C F YP G + R D +VF+F +KC F KRNP ++ WT +R+
Sbjct: 1 MKVELCSFSGYKIYPGHGRRYARIDGKVFQFLNAKCESAFLAKRNPRQINWTVLYRRKHK 60
Query: 226 KEMTVDSTLQVAARRNVTVRYDR*LMGKTL 315
K + + T + R V++ R + G +L
Sbjct: 61 KGQSEEVTKK---RTRRAVKFQRAITGASL 87
>ref|NP_376140.1| (NC_003106) 61aa long hypothetical 50S ribosomal protein L24
[Sulfolobus tokodaii]
dbj|BAB65249.1| (AP000982) 61aa long hypothetical 50S ribosomal protein L24
[Sulfolobus tokodaii]
Length = 61
Score = 57.0 bits (136), Expect = 4e-08
Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Frame = +1
Query: 52 IETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKN-FKMKRNPFKLKWTKAF 210
I+ C FC + P+ G+ ++RND + FC +KC K+ K+ R+P KLKWTK++
Sbjct: 4 IKQCSFCGKEIPPATGLMYIRNDGSILWFCSNKCKKSMLKLHRDPKKLKWTKSY 57
>ref|XP_016822.2| (XM_016822) similar to ribosomal protein L24 (H. sapiens) [Homo
sapiens]
Length = 157
Score = 57.0 bits (136), Expect = 4e-08
Identities = 29/90 (32%), Positives = 45/90 (49%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
M++E C F YP +G + R D +VF F +KC F KRNP+++ WT R+
Sbjct: 1 MKVELCSFSGYKIYPGQGRHYARTDGKVFEFLNAKCESAFLSKRNPWQINWTVLHRR--- 57
Query: 226 KEMTVDSTLQVAARRNVTVRYDR*LMGKTL 315
K +S R + V++ R + G +L
Sbjct: 58 KHKKGESEEIQKKRTHPAVKFQRAITGASL 87
>ref|NP_000977.1| (NM_000986) ribosomal protein L24; 60S ribosomal protein L24;
ribosomal protein L30 [Homo sapiens]
ref|NP_071960.1| (NM_022515) ribosomal protein L24 [Rattus norvegicus]
ref|NP_077180.1| (NM_024218) ribosomal protein L24 [Mus musculus]
sp|P38663|RL24_HUMAN 60S ribosomal protein L24 (L30)
pir||JN0549 ribosomal protein L24 - human
pir||JC2444 ribosomal protein L24, cytosolic [validated] - rat
gb|AAC28251.1| (M94314) ribosomal protein L30 [Homo sapiens]
emb|CAA55203.1| (X78443) ribosomal protein L24 [Rattus norvegicus]
gb|AAC16388.1| (AF063243) ribosomal protein L30 [Bos taurus]
gb|AAH00690.1|AAH00690 (BC000690) ribosomal protein L24 [Homo sapiens]
gb|AAH02110.1|AAH02110 (BC002110) ribosomal protein L24 [Mus musculus]
dbj|BAB31374.1| (AK018731) data source:SPTR, source key:P38663,
evidence:ISS~homolog to 60S RIBOSOMAL PROTEIN L24
(L30)~putative [Mus musculus]
dbj|BAB79466.1| (AB061828) ribosomal protein L24 [Homo sapiens]
Length = 157
Score = 56.6 bits (135), Expect = 5e-08
Identities = 28/90 (31%), Positives = 45/90 (49%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
M++E C F YP G + R D +VF+F +KC F KRNP ++ WT +R+
Sbjct: 1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60
Query: 226 KEMTVDSTLQVAARRNVTVRYDR*LMGKTL 315
K + + + R V++ R + G +L
Sbjct: 61 KGQSEEIQKK---RTRRAVKFQRAITGASL 87
>ref|XP_079782.1| (XM_079782) CG9282 [Drosophila melanogaster]
gb|AAF53299.1| (AE003640) CG9282 gene product [Drosophila melanogaster]
gb|AAL48899.1| (AY071277) RE30690p [Drosophila melanogaster]
Length = 155
Score = 56.2 bits (134), Expect = 6e-08
Identities = 29/90 (32%), Positives = 48/90 (53%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
M+I C F YP G T V+ D + F F KC +++ MKRNP K+ WT +R+
Sbjct: 1 MKIGLCAFSGYKIYPGHGKTMVKIDGKSFTFLDKKCERSYLMKRNPRKVTWTVLYRRKHR 60
Query: 226 KEMTVDSTLQVAARRNVTVRYDR*LMGKTL 315
K + +++ + R T ++ R ++G +L
Sbjct: 61 KGIEEEASKK---RTRRTQKFQRAIVGASL 87
>dbj|BAB31605.1| (AK019214) data source:SPTR, source key:P38663,
evidence:ISS~homolog to 60S RIBOSOMAL PROTEIN L24
(L30)~putative [Mus musculus]
Length = 67
Score = 55.5 bits (132), Expect = 1e-07
Identities = 23/61 (37%), Positives = 33/61 (53%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
M++E C F YP G + R D +VF+F +KC F KRNP ++ WT +R+
Sbjct: 1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60
Query: 226 K 228
K
Sbjct: 61 K 61
>gb|AAK92161.1|AF400189_1 (AF400189) ribosomal protein L24 [Spodoptera frugiperda]
Length = 155
Score = 55.1 bits (131), Expect = 1e-07
Identities = 30/91 (32%), Positives = 45/91 (48%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
M+I C + YP G T V+ D + F F SKC M+RNP K+ WT +R+
Sbjct: 1 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 60
Query: 226 KEMTVDSTLQVAARRNVTVRYDR*LMGKTLN 318
K + T + R T +Y R ++G +L+
Sbjct: 61 KGQEEEQTKK---RTRRTQKYQRAIVGASLS 88
>sp|P38665|RL24_KLULA 60S RIBOSOMAL PROTEIN L24 (L30)
gb|AAA35269.1| (L05777) ribosomal protein L30 [Kluyveromyces lactis]
Length = 155
Score = 54.3 bits (129), Expect = 2e-07
Identities = 32/103 (31%), Positives = 53/103 (51%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
M++E F YP +G FVR D+++FRF SK F ++NP ++ WT +R+
Sbjct: 1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQSSKSASLFHQRKNPRRIAWTVLYRRHHK 60
Query: 226 KEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAMERVSQIRERR 354
K +T + + R +V+ R ++G +L I+ERR
Sbjct: 61 KGITEEVARK---RTRKSVKAQRAVVGASLEL------IKERR 94
>ref|NP_148574.1| (NC_000854) 50S ribosomal protein L24 [Aeropyrum pernix]
sp|Q9Y9A7|R24E_AERPE 50S ribosomal protein L24E
pir||A72467 probable ribosomal protein L24 APES070 - Aeropyrum pernix (strain
K1)
dbj|BAA81393.1| (AP000064) 63aa long hypothetical 50S ribosomal protein L24
[Aeropyrum pernix]
Length = 63
Score = 53.5 bits (127), Expect = 4e-07
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +1
Query: 58 TCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNF-KMKRNPFKLKWTKAFRKA 219
TC FC P G+ +V + ++ FC SKC+KNF K++R P KL+W + +K+
Sbjct: 6 TCSFCGGSIEPGTGLMYVLRNGQILWFCSSKCYKNFVKLRRKPDKLEWVRKVKKS 60
>ref|NP_341782.1| (NC_002754) LSU ribosomal protein L24E (rpl24E) [Sulfolobus
solfataricus]
gb|AAK40572.1| (AE006660) LSU ribosomal protein L24E (rpl24E) [Sulfolobus
solfataricus]
Length = 61
Score = 51.6 bits (122), Expect = 2e-06
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 61 CYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKN-FKMKRNPFKLKWTKAFRK 216
C FC P G+ +VRND + FC SKC K+ K R+P K KWT + K
Sbjct: 7 CSFCGHEIPPGTGLMYVRNDGTILWFCSSKCRKSMLKYHRDPKKYKWTTRYMK 59
>ref|XP_088933.1| (XM_088933) hypothetical protein XP_088933 [Homo sapiens]
Length = 122
Score = 50.4 bits (119), Expect = 3e-06
Identities = 21/61 (34%), Positives = 32/61 (52%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 225
M++E C F YP G + R D +VF+F +KC + + NP ++ WT +RK
Sbjct: 1 MKVELCGFSRYKVYPGHGRRYARTDRKVFQFLNAKCESAYFSRGNPRQISWTVLYRKKHK 60
Query: 226 K 228
K
Sbjct: 61 K 61
>ref|NP_560675.1| (NC_003364) ribosomal protein L24 [Pyrobaculum aerophilum]
gb|AAL64857.1| (AE009925) ribosomal protein L24 [Pyrobaculum aerophilum]
Length = 58
Score = 50.1 bits (118), Expect = 4e-06
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKN-FKMKRNPFKLKWTKAFRK 216
M+I C FC P GI +V++D V RFC KC + K RNP KL W + +K
Sbjct: 1 MKIHKCAFCGADILPGYGIMYVKSDGTVLRFCSRKCFVSAVKYGRNPRKLAWVRKRQK 58
>ref|NP_394573.1| (NC_002578) probable 50S ribosomal protein L24E [Thermoplasma
acidophilum]
emb|CAC12241.1| (AL445066) probable 50S ribosomal protein L24E [Thermoplasma
acidophilum]
Length = 67
Score = 48.5 bits (114), Expect = 1e-05
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 55 ETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKN-FKMKRNPFKLKWTKAFRK 216
+ C FC + P GI +VR D + FC +KC KN ++ R P +KWT + +
Sbjct: 5 KNCSFCGKAIEPGTGIMYVRKDGAILYFCSNKCRKNMIELNRVPRYVKWTNEYHE 59
>ref|NP_110970.1| (NC_002689) 50S ribosomal protein L24E [Thermoplasma volcanium]
dbj|BAB59591.1| (AP000992) ribosomal protein large subunit L24 [Thermoplasma
volcanium]
Length = 66
Score = 48.1 bits (113), Expect = 2e-05
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKN-FKMKRNPFKLKWTKAFRK 216
M TC FC + P GI +VR D + FC +KC KN + R P ++WT + +
Sbjct: 1 MLARTCSFCGKTIEPGTGIMYVRKDGAILYFCSNKCKKNMIGLNRVPRYVRWTNEYHE 58
>ref|NP_275400.1| (NC_000916) ribosomal protein L24 [Methanothermobacter
thermautotrophicus]
sp|O26357|R24E_METTH 50S ribosomal protein L24E
pir||C69132 ribosomal protein L24 - Methanobacterium thermoautotrophicum
(strain Delta H)
gb|AAB84763.1| (AE000812) ribosomal protein L24 [Methanothermobacter
thermautotrophicus]
Length = 53
Score = 47.8 bits (112), Expect = 2e-05
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 52 IETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKN-FKMKRNPFKLKWTK 204
+ C FC P G +V+ D ++ FC SKC KN K+ R P K+KW K
Sbjct: 1 MRVCSFCHEEIEPGTGKMYVKRDGTIYFFCSSKCEKNMIKLGRVPRKVKWVK 52
>ref|NP_491399.1| (NM_058998) 60S ribosomal protein L24 [Caenorhabditis elegans]
pir||T30926 hypothetical protein D1007.12 - Caenorhabditis elegans
gb|AAK18907.1| (AF003151) Hypothetical protein D1007.12 [Caenorhabditis elegans]
Length = 159
Score = 46.2 bits (108), Expect = 6e-05
Identities = 20/56 (35%), Positives = 30/56 (52%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFR 213
M++ETC + +P G VR D +V F K K K++RNP ++WT +R
Sbjct: 1 MKVETCVYSGYKIHPGHGKRLVRTDGKVQIFLSGKALKGAKLRRNPRDIRWTVLYR 56
>ref|NP_280059.1| (NC_002607) 50S ribosomal protein L24E; Rpl24e [Halobacterium sp.
NRC-1]
gb|AAG19539.1| (AE005044) 50S ribosomal protein L24E; Rpl24e [Halobacterium sp.
NRC-1]
dbj|BAB17307.1| (AB036344) LSU ribosomal protein L24E [Halobacterium salinarum]
Length = 62
Score = 45.8 bits (107), Expect = 8e-05
Identities = 18/52 (34%), Positives = 26/52 (49%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWT 201
++ +C +C P G FV ND FC +KC KN + R P ++WT
Sbjct: 2 VQTRSCDYCGDDIEPGTGTMFVHNDGSTVHFCSAKCEKNADLGREPRDVEWT 53
>ref|NP_113543.1| (NC_002753) 60S ribosomal protein L24 [Guillardia theta]
emb|CAC27112.1| (AJ010592) 60S ribosomal protein L24 [Guillardia theta]
Length = 106
Score = 45.4 bits (106), Expect = 1e-04
Identities = 23/55 (41%), Positives = 27/55 (48%)
Frame = +1
Query: 52 IETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRK 216
+E C FC YP G FV N F FC +KC K K+ + LKWT F K
Sbjct: 1 MEICNFCGIGIYPGHGSMFVTNKFDKFYFCSTKCKKLKKIGKTNKGLKWTIKFSK 55
>sp|P14116|R24E_HALMA 50S ribosomal protein L24E (HL21/HL22)
pir||R6HS21 ribosomal protein L24.eR [validated] - Haloarcula marismortui
pdb|1FFK|R Chain R, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
pdb|1GIY|R Chain R, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules Are
In The File 1gix
pdb|1JJ2|T Chain T, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
Length = 66
Score = 43.1 bits (100), Expect = 5e-04
Identities = 20/60 (33%), Positives = 24/60 (39%)
Frame = +1
Query: 49 RIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADGK 228
R C +C P G FV D FC SKC N + R L+WT R G+
Sbjct: 2 RTRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTARGEAGE 61
>gb|AAC63142.1| (AF011787) ribosomal protein L24 [Trypanosoma brucei]
Length = 125
Score = 42.7 bits (99), Expect = 7e-04
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVR----NDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFR 213
MR C F +P G +V + V F R KC + K+NP + WT+ +R
Sbjct: 1 MRTIDCEFSHFAVHPGHGRRYVPFAFLSTKPVLTFARPKCFAMYMRKKNPRFIAWTRTYR 60
Query: 214 KADGKEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAMERVSQIRERRER 360
+ K T + AAR TVR +R ++G L+ ++ V ++ +R
Sbjct: 61 RIHRKTTTDRVGRRRAAR---TVRAERAIVGAELSYIQEVRAKAKKVDR 106
>ref|XP_092196.1| (XM_092196) hypothetical protein XP_092196 [Homo sapiens]
Length = 204
Score = 36.6 bits (83), Expect = 0.051
Identities = 20/55 (36%), Positives = 26/55 (46%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAF 210
M +E CYFCS P YP G+ F N+ SK N M ++ TK+F
Sbjct: 1 MLVEKCYFCSGPIYPGHGMMFTCNN--------SKKSLNLSMYSITMEISRTKSF 47
>ref|XP_092760.1| (XM_092760) hypothetical protein XP_092760 [Homo sapiens]
Length = 101
Score = 35.0 bits (79), Expect = 0.15
Identities = 16/46 (34%), Positives = 24/46 (51%), Gaps = 2/46 (4%)
Frame = +1
Query: 46 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCH--KNFKMKR 177
M++E C F Y + R + +VFRF SKC +N K++R
Sbjct: 1 MKVELCSFSGYKIYSGHRRRYARTEGKVFRFLNSKCEGIRNLKLER 46
>ref|XP_067274.2| (XM_067274) similar to SALL1 (sal (Drosophila)-like [Homo sapiens]
Length = 645
Score = 34.7 bits (78), Expect = 0.19
Identities = 16/62 (25%), Positives = 31/62 (49%)
Frame = +1
Query: 43 KMRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKAD 222
+++++ C F +P G + D +VF+F + F KRNP ++ W+ +R+
Sbjct: 491 QLKVKPCSFSRYKIFPGHGRHYTGTDEKVFQFLNA-----FISKRNPQQINWSILYRRKP 545
Query: 223 GK 228
K
Sbjct: 546 EK 547
>ref|XP_063031.1| (XM_063031) hypothetical protein XP_063031 [Homo sapiens]
Length = 389
Score = 32.3 bits (72), Expect = 0.96
Identities = 21/55 (38%), Positives = 26/55 (47%)
Frame = +2
Query: 197 GQRPSVRPTARR*RSTLLCRSPPAATLPFATTDSSWARPSMPWSACPRSVNVASA 361
G S RPTA R L R P T+P A+ WAR + P + R+ ASA
Sbjct: 246 GTTRSGRPTAVEERELALQRIPGGCTMPSASHRVIWARANDPQAVWDRTSPAASA 300
>ref|NP_070505.1| (NC_000917) conserved hypothetical protein [Archaeoglobus fulgidus]
pir||D69459 conserved hypothetical protein AF1677 - Archaeoglobus fulgidus
gb|AAB89568.1| (AE000987) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 411
Score = 30.8 bits (68), Expect = 2.8
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -2
Query: 365 KTRSRRSRIWDTRS--MALRVLPMSYRS*RTVTLRRAATCRVESTVISLPSALRKAFVH 195
+ R R +W+TR + LR LP R R + + E ++SLP L+ FVH
Sbjct: 201 EVRKIREILWETRDAKLGLRELPKYLRYERNLLQKLREGKSEEEALLSLPKNLKMMFVH 259
>ref|NP_422465.1| (NC_002696) hypothetical protein [Caulobacter crescentus CB15]
gb|AAK25633.1| (AE006025) hypothetical protein [Caulobacter crescentus CB15]
Length = 278
Score = 30.4 bits (67), Expect = 3.7
Identities = 17/42 (40%), Positives = 21/42 (49%)
Frame = -1
Query: 339 LGHALHGIEGLAHELSVVANGNVAAGGDLQSRVDRHLLAVGL 214
LG LHG+ GL H + + G A G HL+AVGL
Sbjct: 84 LGALLHGVSGLGHAVETLQGGRRRALGPF------HLVAVGL 119
>pir||T06700 hypothetical protein T29H11.60 - Arabidopsis thaliana
emb|CAB41156.1| (AL049659) putative protein [Arabidopsis thaliana]
Length = 686
Score = 30.4 bits (67), Expect = 3.7
Identities = 17/36 (47%), Positives = 22/36 (60%)
Frame = -2
Query: 320 ALRVLPMSYRS*RTVTLRRAATCRVESTVISLPSAL 213
+LR PM YRS R+V TC S++ +LPSAL
Sbjct: 48 SLRAKPMVYRSSRSV----GVTCSASSSLTTLPSAL 79
>ref|NP_566903.1| (NM_114701) Expressed protein [Arabidopsis thaliana]
gb|AAK44065.1|AF370250_1 (AF370250) unknown protein [Arabidopsis thaliana]
gb|AAL34240.1| (AY063066) unknown protein [Arabidopsis thaliana]
Length = 319
Score = 30.4 bits (67), Expect = 3.7
Identities = 17/36 (47%), Positives = 22/36 (60%)
Frame = -2
Query: 320 ALRVLPMSYRS*RTVTLRRAATCRVESTVISLPSAL 213
+LR PM YRS R+V TC S++ +LPSAL
Sbjct: 48 SLRAKPMVYRSSRSV----GVTCSASSSLTTLPSAL 79
>pir||S21333 hypothetical protein 3 - Agrobacterium tumefaciens
emb|CAA38902.1| (X55075) ORF3 [Agrobacterium tumefaciens]
Length = 221
Score = 30.4 bits (67), Expect = 3.7
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 82 AYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADGKEMTVDSTLQ 255
A PS+ I +RN V+R + FK+ +P K W++ R+ ++ ++TLQ
Sbjct: 102 ALPSRDIGEIRNPQPVWR-------RGFKLAVHPVKRTWSRLVRERRADRLSPNNTLQ 152
>ref|NP_599972.1| (NC_003450) COG1208:Nucleoside-diphosphate-sugar pyrophosphorylases
involved in lipopolysaccharide biosynthesis/translation
initiation factor eIF2B subunits [Corynebacterium
glutamicum]
Length = 362
Score = 30.0 bits (66), Expect = 4.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 309 LAHELSVVANGNVAAGGDLQSRVDRH 232
L H+ ++V NG+V +G DL S +D H
Sbjct: 105 LRHDTAIVFNGDVLSGADLNSILDTH 130
>ref|NP_110160.1| (NC_000912) conserved hypothetical protein [Mycoplasma pneumoniae]
sp|P75312|Y326_MYCPN Hypothetical protein MG326 homolog (P01_orf293)
pir||S73695 degV homolog P01_orf293 - Mycoplasma pneumoniae (strain ATCC 29342)
gb|AAB96017.1| (AE000035) conserved hypothetical protein [Mycoplasma pneumoniae]
Length = 293
Score = 30.0 bits (66), Expect = 4.8
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Frame = +1
Query: 94 KGITFVRNDARVFRFCRSKCHKNFKMKR-------NPFKLKWTKA 207
K TFV+ ++F F +SK NFK+KR P K K KA
Sbjct: 204 KAFTFVQALEKIFTFVKSKFGDNFKIKRIGFCNAFTPVKAKEVKA 248
>sp|O97775|ANDR_PANTR Androgen receptor (Dihydrotestosterone receptor)
gb|AAC73048.1| (U94177) androgen receptor [Pan troglodytes]
Length = 911
Score = 29.6 bits (65), Expect = 6.2
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Frame = +3
Query: 144 QQVPQELQDEAKPFQAQVDKGLP*GRRQGDDGRLYSAGRRPPQRYRSL----RPIAHGQD 311
QQ Q+ Q E P Q Q +QG+DG A RR P Y L +P
Sbjct: 70 QQQQQQQQQETSPRQQQ---------QQGEDGS-PQAHRRGPTGYLVLDEEQQPSQPQSA 119
Query: 312 PQCHGAR--VPDP 344
P+CH R VP+P
Sbjct: 120 PECHPERGCVPEP 132
>ref|XP_065896.1| (XM_065896) hypothetical protein XP_065896 [Homo sapiens]
Length = 267
Score = 29.6 bits (65), Expect = 6.2
Identities = 22/80 (27%), Positives = 33/80 (40%), Gaps = 7/80 (8%)
Frame = +3
Query: 114 QRCPSL*ILPQQVPQELQDEAKPFQAQVDKG-------LP*GRRQGDDGRLYSAGRRPPQ 272
+R P L P++ P E P Q G + GR+ D + S+ R+ P
Sbjct: 44 ERTPGLIAAPEEEPSRNGGEKLPELGQEAGGGVIRRPRVQLGRKAPSDAQPQSSRRQKPV 103
Query: 273 RYRSLRPIAHGQDPQCHGAR 332
R+R P+ G C G+R
Sbjct: 104 RHRRCAPV-RGSSRSCSGSR 122
>ref|NP_378211.1| (NC_003106) 112aa long hypothetical protein [Sulfolobus tokodaii]
dbj|BAB67320.1| (AP000989) 112aa long hypothetical protein [Sulfolobus tokodaii]
Length = 112
Score = 29.6 bits (65), Expect = 6.2
Identities = 19/47 (40%), Positives = 24/47 (50%), Gaps = 1/47 (2%)
Frame = +1
Query: 58 TCYFCSRPAYPSKGITFVRNDARVFRFC-RSKCHKNFKMKRNPFKLK 195
TC FC +P Y + TF+ N A V C R + K K+ NP LK
Sbjct: 9 TCGFCGKPIYWDELFTFLSNKAVVHYTCLRERATKTSKI--NPEVLK 53
>emb|CAC42467.1| (AL137119) bA110K18.1 (zinc finger protein 198) [Homo sapiens]
Length = 1149
Score = 29.3 bits (64), Expect = 8.1
Identities = 12/36 (33%), Positives = 18/36 (49%)
Frame = +1
Query: 61 CYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFK 168
C+FC R + P T D +++ FC S C F+
Sbjct: 584 CHFCKRNSLPQYQATMP--DGKLYNFCNSSCVAKFQ 617
>pir||T09483 Cys-rich protein RAMP - human
gb|AAB88464.1| (AF035374) Cys-rich protein [Homo sapiens]
Length = 699
Score = 29.3 bits (64), Expect = 8.1
Identities = 12/36 (33%), Positives = 18/36 (49%)
Frame = +1
Query: 61 CYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFK 168
C+FC R + P T D +++ FC S C F+
Sbjct: 312 CHFCKRNSLPQYQATMP--DGKLYNFCNSSCVAKFQ 345
>ref|NP_003444.1| (NM_003453) zinc finger protein 198; fused in myeloproliferative
disorder; rearranged in an atypical myeloproliferative
disorder [Homo sapiens]
sp|Q9UBW7|Z198_HUMAN Zinc finger protein 198 (Fused in myeloproliferative disorders
protein) (Rearranged in atypical myeloproliferative
disorder protein)
emb|CAA12204.1| (AJ224901) ZNF198 protein [Homo sapiens]
emb|CAA07604.1| (AJ007676) ZNF198 protein [Homo sapiens]
Length = 1377
Score = 29.3 bits (64), Expect = 8.1
Identities = 12/36 (33%), Positives = 18/36 (49%)
Frame = +1
Query: 61 CYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFK 168
C+FC R + P T D +++ FC S C F+
Sbjct: 584 CHFCKRNSLPQYQATMP--DGKLYNFCNSSCVAKFQ 617
>gb|AAC23591.1| (AF060181) zinc finger protein [Homo sapiens]
Length = 1113
Score = 29.3 bits (64), Expect = 8.1
Identities = 12/36 (33%), Positives = 18/36 (49%)
Frame = +1
Query: 61 CYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFK 168
C+FC R + P T D +++ FC S C F+
Sbjct: 320 CHFCKRNSLPQYQATMP--DGKLYNFCNSSCVAKFQ 353
>ref|XP_065132.2| (XM_065132) hypothetical protein XP_065132 [Homo sapiens]
Length = 469
Score = 29.3 bits (64), Expect = 8.1
Identities = 15/45 (33%), Positives = 17/45 (37%)
Frame = +2
Query: 200 QRPSVRPTARR*RSTLLCRSPPAATLPFATTDSSWARPSMPWSAC 334
Q P+VRP A T L P A W + PW AC
Sbjct: 64 QEPAVRPVAHVTLGTHLRAKPDKAPGELQVPQPDWRQEGDPWGAC 108
>gb|AAA88541.1| (L76292) 15 kDa protein [Shallot virus X]
Length = 127
Score = 29.3 bits (64), Expect = 8.1
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 34 HPYKMRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRN-PFK 189
HP+ + + C S+P++P+ T +FR C + C N ++ N PF+
Sbjct: 2 HPHDLNLLCCLHFSKPSFPNDLKTL------LFRVCETSCKLNRRLLDNKPFQ 48
>pir||T45119 FIM protein [imported] - human
emb|CAA73875.1| (Y13472) FIM protein [Homo sapiens]
Length = 1379
Score = 29.3 bits (64), Expect = 8.1
Identities = 12/36 (33%), Positives = 18/36 (49%)
Frame = +1
Query: 61 CYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFK 168
C+FC R + P T D +++ FC S C F+
Sbjct: 586 CHFCKRNSLPQYQATMP--DGKLYNFCNSSCVAKFQ 619
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: Mar 29, 2002 2:16 AM
Number of letters in database: 284,333,007
Number of sequences in database: 907,641
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,713,645
Number of Sequences: 907641
Number of extensions: 3212934
Number of successful extensions: 10555
Number of sequences better than 10.0: 156
Number of HSP's better than 10.0 without gapping: 10322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10546
length of database: 284,333,007
effective HSP length: 97
effective length of database: 196,291,830
effective search space used: 4711003920
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)