The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FgrNT3_0_G03.seq Fgr_0_G03 LENGTH:262bp ; DIRECTION:5 ;
CLONE:Fgr_0_G03 ; CLONELIB: n/a ; TISSUE:
(262 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
907,641 sequences; 284,333,007 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_203551.1| (NC_003092) non-glycosylated envelope prot... 31 3.2
pdb|1QS0|B Chain B, Crystal Structure Of Pseudomonas Putida... 30 4.2
gb|AAA65615.1| (M57613) 39 kDa keto acid dehydrogenase E1-b... 30 4.2
ref|NP_490701.1| (NM_058300) Y48G1BM.5.p [Caenorhabditis el... 30 4.2
sp|P09061|ODBB_PSEPU 2-OXOISOVALERATE DEHYDROGENASE BETA SU... 30 4.2
ref|NP_250938.1| (NC_002516) 2-oxoisovalerate dehydrogenase... 30 4.2
pir||T12235 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) ch... 30 5.5
pir||T12231 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) ch... 30 5.5
gb|AAL66440.1|AF398232_1 (AF398232) NADH dehydrogenase subu... 30 5.5
pir||T12236 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) ch... 30 5.5
pir||T12233 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) ch... 30 5.5
pir||T12232 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) ch... 30 5.5
ref|NP_001778.1| (NM_001787) cell division cycle 2-like 1, ... 30 5.5
gb|AAF18930.1|AF099275_2 (AF099275) NADH dehydrogenase subu... 30 5.5
dbj|BAB19357.1| (AB040073) ubiquitin activating enzyme [Xen... 30 5.5
ref|NP_387039.1| (NC_003047) PROBABLE 2-OXOISOVALERATE DEHY... 30 5.5
ref|NP_105336.1| (NC_002678) 2-oxoisovalerate dehydrogenase... 30 5.5
gb|AAC59857.1| (U50610) IgW heavy chain V-region [Carcharhi... 30 5.5
gb|AAF18879.1|AF099258_2 (AF099258) NADH dehydrogenase subu... 30 5.5
ref|NP_357137.1| (NC_003063) AGR_L_2718p [Agrobacterium tum... 30 5.5
ref|NP_284922.1| (NM_033536) cell division cycle 2-like 2, ... 30 5.5
ref|NP_277024.1| (NM_033489) cell division cycle 2-like 1 (... 30 5.5
ref|NP_277021.1| (NM_033486) cell division cycle 2-like 1 (... 30 5.5
gb|AAA19594.1| (U07704) PITSLRE isoform PBETA21 [Homo sapiens] 30 5.5
ref|NP_499624.1| (NM_067223) PH (pleckstrin homology) doma... 30 5.5
gb|AAC97115.1| (AF093690) ubiquitin hydrolase B [Dictyostel... 30 5.5
gb|AAC83664.1| (AF080683) PITSLRE protein kinase alpha SV9 ... 30 5.5
gb|AAF79718.1|AC020889_26 (AC020889) T1N15.2 [Arabidopsis t... 30 7.2
gb|AAF02988.1|AF092395_1 (AF092395) NADH dehydrogenase subu... 30 7.2
gb|AAF02946.1|AF092374_1 (AF092374) NADH dehydrogenase subu... 30 7.2
gb|AAF02994.1|AF092398_1 (AF092398) NADH dehydrogenase subu... 30 7.2
gb|AAF02986.1|AF092394_1 (AF092394) NADH dehydrogenase subu... 30 7.2
gb|AAF02990.1|AF092396_1 (AF092396) NADH dehydrogenase subu... 30 7.2
ref|XP_092103.1| (XM_092103) hypothetical protein XP_092103... 30 7.2
pir||JC4131 glioma pathogenesis-related protein - human >gi... 29 9.5
pir||T12237 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) ch... 29 9.5
gb|AAK38260.1|AF319782_54 (AF319782) ORF51 [callitrichine h... 29 9.5
sp|Q9WTQ2|PODX_RAT Podocalyxin precursor >gi|4996222|dbj|BA... 29 9.5
dbj|BAA06530.1| (D31732) nitrite reductase [Plectonema bory... 29 9.5
pir||T12234 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) ch... 29 9.5
gb|AAF14238.1|AF109393_1 (AF109393) podocalyxin [Rattus nor... 29 9.5
emb|CAA20350.1| (AL031282) dJ283E3.3.3 (Cell Division Cycle... 29 9.5
gb|AAL96552.1| (AF485465) immunoglobulin heavy chain variab... 29 9.5
gb|AAA17954.1| (U00542) immunoglobulin heavy chain variable... 29 9.5
gb|AAB81511.1| (AF022650) kinesin like protein at 38B [Dros... 29 9.5
>ref|NP_203551.1| (NC_003092) non-glycosylated envelope protein [Simian hemorrhagic
fever virus]
gb|AAB63398.1| (AF180391) non-glycosylated envelope protein [Simian hemorrhagic
fever virus]
Length = 162
Score = 30.8 bits (68), Expect = 3.2
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -2
Query: 210 LTSQYIPVPSSLMKNECPTSATRSSNSTTLQTLRSGVDRSTSASLSAKKKYIL 52
L QYI PSS++++ A ++ ST + T RSG+ + + K+ IL
Sbjct: 87 LGRQYITAPSSMVESSLGRLAINATGSTAVVTRRSGMTAVNGSLMPDVKRIIL 139
>pdb|1QS0|B Chain B, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase E1b)
Length = 338
Score = 30.4 bits (67), Expect = 4.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 200 WDVKSCHANHWGYFPGP 250
WD HA W YFPGP
Sbjct: 309 WDTPYPHAQEWAYFPGP 325
>gb|AAA65615.1| (M57613) 39 kDa keto acid dehydrogenase E1-beta subunit
[Pseudomonas putida]
Length = 352
Score = 30.4 bits (67), Expect = 4.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 200 WDVKSCHANHWGYFPGP 250
WD HA W YFPGP
Sbjct: 323 WDTPYPHAQEWAYFPGP 339
>ref|NP_490701.1| (NM_058300) Y48G1BM.5.p [Caenorhabditis elegans]
gb|AAK68497.1|AC024794_5 (AC024794) Hypothetical protein Y48G1BM.5 [Caenorhabditis elegans]
Length = 994
Score = 30.4 bits (67), Expect = 4.2
Identities = 18/44 (40%), Positives = 26/44 (58%), Gaps = 1/44 (2%)
Frame = -2
Query: 201 QYIPVPSSLMKNECPTSAT-RSSNSTTLQTLRSGVDRSTSASLS 73
Q +P SL + +C + T R + STT +T R+GV +TS S S
Sbjct: 575 QDLPRDGSLWRIQCSHATTIRRATSTTTRTSRTGVPTTTSRSCS 618
>sp|P09061|ODBB_PSEPU 2-OXOISOVALERATE DEHYDROGENASE BETA SUBUNIT (BRANCHED-CHAIN
ALPHA-KETO ACID DEHYDROGENASE COMPONENT BETA CHAIN (E1))
(BCKDH E1-BETA)
pir||DEPSEB 3-methyl-2-oxobutanoate dehydrogenase (lipoamide) (EC 1.2.4.4)
chain E1-beta - Pseudomonas putida
gb|AAA65616.1| (M57613) 37 kDa keto acid dehydrogenase E1-beta subunit
[Pseudomonas putida]
Length = 339
Score = 30.4 bits (67), Expect = 4.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 200 WDVKSCHANHWGYFPGP 250
WD HA W YFPGP
Sbjct: 310 WDTPYPHAQEWAYFPGP 326
>ref|NP_250938.1| (NC_002516) 2-oxoisovalerate dehydrogenase (beta subunit)
[Pseudomonas aeruginosa]
pir||D83365 2-oxoisovalerate dehydrogenase (beta subunit) PA2248 [imported] -
Pseudomonas aeruginosa (strain PAO1)
gb|AAG05636.1|AE004650_7 (AE004650) 2-oxoisovalerate dehydrogenase (beta subunit)
[Pseudomonas aeruginosa]
Length = 350
Score = 30.4 bits (67), Expect = 4.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 200 WDVKSCHANHWGYFPGP 250
WD HA W YFPGP
Sbjct: 321 WDTPYPHAQEWAYFPGP 337
>pir||T12235 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - Amargosa
pupfish mitochondrion
gb|AAB84488.1| (AF028307) NADH dehydrogenase subunit 2 [Cyprinodon nevadensis]
Length = 348
Score = 30.0 bits (66), Expect = 5.5
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 14 VPKATSVAMSQLANMYFFFALNEALVLRSTPD 109
VP AT A+S L +++F+ L+ A+ L TP+
Sbjct: 275 VPLATIAALSALLSLFFYLRLSYAMTLTMTPN 306
>pir||T12231 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - Cyprinodon
nevadensis mitochondrion
gb|AAB84482.1| (AF028301) NADH dehydrogenase subunit 2 [Cyprinodon nevadensis
nevadensis]
gb|AAB84486.1| (AF028305) NADH dehydrogenase subunit 2 [Cyprinodon nevadensis]
Length = 348
Score = 30.0 bits (66), Expect = 5.5
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 14 VPKATSVAMSQLANMYFFFALNEALVLRSTPD 109
VP AT A+S L +++F+ L+ A+ L TP+
Sbjct: 275 VPLATIAALSALLSLFFYLRLSYAMTLTMTPN 306
>gb|AAL66440.1|AF398232_1 (AF398232) NADH dehydrogenase subunit 2 [Orthochromis
malagaraziensis]
Length = 348
Score = 30.0 bits (66), Expect = 5.5
Identities = 13/31 (41%), Positives = 20/31 (63%)
Frame = +2
Query: 17 PKATSVAMSQLANMYFFFALNEALVLRSTPD 109
P AT A+S L ++YF+ L+ A+ L TP+
Sbjct: 276 PAATLAALSALLSLYFYLRLSYAMTLTITPN 306
>pir||T12236 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - Amargosa
pupfish mitochondrion (Death Valley haplotype 'J')
gb|AAB84489.1| (AF028308) NADH dehydrogenase subunit 2 [Cyprinodon nevadensis]
Length = 348
Score = 30.0 bits (66), Expect = 5.5
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 14 VPKATSVAMSQLANMYFFFALNEALVLRSTPD 109
VP AT A+S L +++F+ L+ A+ L TP+
Sbjct: 275 VPLATIAALSALLSLFFYLRLSYAMTLTMTPN 306
>pir||T12233 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - Amargosa
pupfish mitochondrion
gb|AAB84485.1| (AF028304) NADH dehydrogenase subunit 2 [Cyprinodon nevadensis]
Length = 348
Score = 30.0 bits (66), Expect = 5.5
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 14 VPKATSVAMSQLANMYFFFALNEALVLRSTPD 109
VP AT A+S L +++F+ L+ A+ L TP+
Sbjct: 275 VPLATIAALSALLSLFFYLRLSYAMTLTMTPN 306
>pir||T12232 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - Amargosa
pupfish mitochondrion
gb|AAB84483.1| (AF028302) NADH dehydrogenase subunit 2 [Cyprinodon nevadensis]
gb|AAB84484.1| (AF028303) NADH dehydrogenase subunit 2 [Cyprinodon nevadensis]
Length = 348
Score = 30.0 bits (66), Expect = 5.5
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 14 VPKATSVAMSQLANMYFFFALNEALVLRSTPD 109
VP AT A+S L +++F+ L+ A+ L TP+
Sbjct: 275 VPLATIAALSALLSLFFYLRLSYAMTLTMTPN 306
>ref|NP_001778.1| (NM_001787) cell division cycle 2-like 1, isoform 1; Cell division
cycle 2-like 1; PITSLRE protein kinase alpha; p58/GTA
protein kinase; galactosyltransferase associated protein
kinase; CDC-related protein kinase p58; PITSLRE B [Homo
sapiens]
gb|AAC72080.1| (AF067515) PITSLRE protein kinase alpha SV9 isoform [Homo sapiens]
Length = 795
Score = 30.0 bits (66), Expect = 5.5
Identities = 17/56 (30%), Positives = 28/56 (49%)
Frame = -1
Query: 205 IPVYPRSQLAHEERVSHVRHEKLKQHNPPDSQVWRRPQHERLIEREEEVHISELRH 38
+ + P Q++ +E+V H + EK K+ S +H R+ E+E E H RH
Sbjct: 83 LAIKPPQQMSRKEKVHHRKDEKRKEKRRHRSHSAEGGKHARVKEKERE-HERRKRH 137
>gb|AAF18930.1|AF099275_2 (AF099275) NADH dehydrogenase subunit 2 [Liolaemus boulengeri]
Length = 345
Score = 30.0 bits (66), Expect = 5.5
Identities = 13/31 (41%), Positives = 19/31 (60%)
Frame = +2
Query: 17 PKATSVAMSQLANMYFFFALNEALVLRSTPD 109
P AT++AMS L N+YF+ L L +P+
Sbjct: 277 PMATTMAMSALLNLYFYLRLTYTSTLTMSPN 307
>dbj|BAB19357.1| (AB040073) ubiquitin activating enzyme [Xenopus laevis]
Length = 1059
Score = 30.0 bits (66), Expect = 5.5
Identities = 19/68 (27%), Positives = 28/68 (40%)
Frame = -2
Query: 219 WHDLTSQYIPVPSSLMKNECPTSATRSSNSTTLQTLRSGVDRSTSASLSAKKKYILASCD 40
W DL+SQ+ S + KN S R + T + S D T +SA + IL
Sbjct: 108 WADLSSQFYLRESDIGKNRAEVSHPRLAELNTYVPVSSSTDPLTDEFMSAFQLVILTGSS 167
Query: 39 MATDVAFG 16
+ + G
Sbjct: 168 LEEQLQVG 175
>ref|NP_387039.1| (NC_003047) PROBABLE 2-OXOISOVALERATE DEHYDROGENASE BETA SUBUNIT
PROTEIN [Sinorhizobium meliloti]
emb|CAC47512.1| (AL591792) PROBABLE 2-OXOISOVALERATE DEHYDROGENASE BETA SUBUNIT
PROTEIN [Sinorhizobium meliloti]
Length = 337
Score = 30.0 bits (66), Expect = 5.5
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 200 WDVKSCHANHWGYFPGP 250
WD HA W YFPGP
Sbjct: 308 WDTPYPHAQEWDYFPGP 324
>ref|NP_105336.1| (NC_002678) 2-oxoisovalerate dehydrogenase (beta subunit)
[Mesorhizobium loti]
dbj|BAB51122.1| (AP003004) 2-oxoisovalerate dehydrogenase (beta subunit)
[Mesorhizobium loti]
Length = 337
Score = 30.0 bits (66), Expect = 5.5
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 200 WDVKSCHANHWGYFPGP 250
WD HA W YFPGP
Sbjct: 308 WDTPYPHAQEWDYFPGP 324
>gb|AAC59857.1| (U50610) IgW heavy chain V-region [Carcharhinus plumbeus]
Length = 183
Score = 30.0 bits (66), Expect = 5.5
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2
Query: 255 KQGPGKYPQWLAWHDLTSQ 199
KQGPGK +WL +HD SQ
Sbjct: 57 KQGPGKGLEWLLYHDSRSQ 75
>gb|AAF18879.1|AF099258_2 (AF099258) NADH dehydrogenase subunit 2 [Liolaemus scapularis]
Length = 344
Score = 30.0 bits (66), Expect = 5.5
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Frame = +2
Query: 17 PKATSVAMSQLANMYFFFALNEALVLRSTPDLRV----WR 124
P AT++AMS L ++YF+ L L +P+L + WR
Sbjct: 277 PMATTLAMSALLSLYFYLRLTYVSTLTMSPNLTMTKHKWR 316
>ref|NP_357137.1| (NC_003063) AGR_L_2718p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_533969.1| (NC_003305) 2-oxoisovalerate dehydrogenase beta subunit
[Agrobacterium tumefaciens str. C58 (U. Washington)]
gb|AAK89922.1| (AE008335) AGR_L_2718p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL44285.1| (AE009277) 2-oxoisovalerate dehydrogenase beta subunit
[Agrobacterium tumefaciens str. C58 (U. Washington)]
Length = 337
Score = 30.0 bits (66), Expect = 5.5
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 200 WDVKSCHANHWGYFPGP 250
WD HA W YFPGP
Sbjct: 308 WDTPYPHAQEWDYFPGP 324
>ref|NP_284922.1| (NM_033536) cell division cycle 2-like 2, isoform 1; cell division
cycle 2-like 3; p58GTA protein kinase; PITSLRE protein
kinase beta; galactosyltransferase associated protein
kinase; PITSLRE A [Homo sapiens]
Length = 777
Score = 30.0 bits (66), Expect = 5.5
Identities = 15/48 (31%), Positives = 25/48 (51%)
Frame = -1
Query: 205 IPVYPRSQLAHEERVSHVRHEKLKQHNPPDSQVWRRPQHERLIEREEE 62
+ + P Q++ +E+V H + EK K+ S +H R+ ERE E
Sbjct: 83 LAIKPPQQMSRKEKVHHRKDEKRKEKRRHRSHSAEGGKHARVKEREHE 130
>ref|NP_277024.1| (NM_033489) cell division cycle 2-like 1 (PITSLRE proteins); Cell
division cycle 2-like 1; PITSLRE protein kinase alpha;
p58/GTA protein kinase; galactosyltransferase associated
protein kinase [Homo sapiens]
gb|AAC72081.1| (AF067516) PITSLRE protein kinase alpha SV10 isoform [Homo sapiens]
gb|AAC83665.1| (AF080683) PITSLRE protein kinase alpha SV10 isoform [Homo sapiens]
Length = 748
Score = 30.0 bits (66), Expect = 5.5
Identities = 17/56 (30%), Positives = 28/56 (49%)
Frame = -1
Query: 205 IPVYPRSQLAHEERVSHVRHEKLKQHNPPDSQVWRRPQHERLIEREEEVHISELRH 38
+ + P Q++ +E+V H + EK K+ S +H R+ E+E E H RH
Sbjct: 49 LAIKPPQQMSRKEKVHHRKDEKRKEKRRHRSHSAEGGKHARVKEKERE-HERRKRH 103
>ref|NP_277021.1| (NM_033486) cell division cycle 2-like 1 (PITSLRE proteins); Cell
division cycle 2-like 1; PITSLRE protein kinase alpha;
p58/GTA protein kinase; galactosyltransferase associated
protein kinase [Homo sapiens]
gb|AAC72077.1| (AF067512) PITSLRE protein kinase alpha SV1 isoform [Homo sapiens]
gb|AAC83662.1| (AF080683) PITSLRE protein kinase alpha SV1 isoform [Homo sapiens]
Length = 782
Score = 30.0 bits (66), Expect = 5.5
Identities = 17/56 (30%), Positives = 28/56 (49%)
Frame = -1
Query: 205 IPVYPRSQLAHEERVSHVRHEKLKQHNPPDSQVWRRPQHERLIEREEEVHISELRH 38
+ + P Q++ +E+V H + EK K+ S +H R+ E+E E H RH
Sbjct: 83 LAIKPPQQMSRKEKVHHRKDEKRKEKRRHRSHSAEGGKHARVKEKERE-HERRKRH 137
>gb|AAA19594.1| (U07704) PITSLRE isoform PBETA21 [Homo sapiens]
Length = 777
Score = 30.0 bits (66), Expect = 5.5
Identities = 15/48 (31%), Positives = 25/48 (51%)
Frame = -1
Query: 205 IPVYPRSQLAHEERVSHVRHEKLKQHNPPDSQVWRRPQHERLIEREEE 62
+ + P Q++ +E+V H + EK K+ S +H R+ ERE E
Sbjct: 83 LAIKPPQQMSRKEKVHHRKDEKRKEKRRHRSHSAEGGKHARVKEREHE 130
>ref|NP_499624.1| (NM_067223) PH (pleckstrin homology) domain [Caenorhabditis
elegans]
pir||T27053 hypothetical protein Y49E10.19 - Caenorhabditis elegans
emb|CAB11565.1| (Z98866) predicted using Genefinder~contains similarity to Pfam
domain: PF00169 (PH domain), Score=34.6,
E-value=8.9e-09, N=1~cDNA EST yk112c5.5 comes from this
gene~cDNA EST yk40h10.3 comes from this gene~cDNA EST
yk29f4.5 comes from this gene~cDNA ES>
Length = 1205
Score = 30.0 bits (66), Expect = 5.5
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = -2
Query: 186 PSSLMKNECP---TSATRSSNSTTLQTLRSGVDRSTSASLS 73
P + M+ + P +SAT SS+STT T SG ST++ +S
Sbjct: 275 PHTFMRKKVPKEASSATSSSSSTTTLTTISGASGSTTSGIS 315
>gb|AAC97115.1| (AF093690) ubiquitin hydrolase B [Dictyostelium discoideum]
Length = 451
Score = 30.0 bits (66), Expect = 5.5
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -2
Query: 243 GKYPQWLAWHDLTSQYIPVPSSLMKNECPTSATRSSNSTTLQTLRSGVDRSTS 85
GKYP +++ ++Y P+S + N S T +S+S+T T S + + S
Sbjct: 57 GKYPTLHSFNQFYTEYFSNPTSNILNNNSNSTTTTSSSSTTATTTSTSNNNKS 109
>gb|AAC83664.1| (AF080683) PITSLRE protein kinase alpha SV9 isoform [Homo sapiens]
Length = 755
Score = 30.0 bits (66), Expect = 5.5
Identities = 17/56 (30%), Positives = 28/56 (49%)
Frame = -1
Query: 205 IPVYPRSQLAHEERVSHVRHEKLKQHNPPDSQVWRRPQHERLIEREEEVHISELRH 38
+ + P Q++ +E+V H + EK K+ S +H R+ E+E E H RH
Sbjct: 83 LAIKPPQQMSRKEKVHHRKDEKRKEKRRHRSHSAEGGKHARVKEKERE-HERRKRH 137
>gb|AAF79718.1|AC020889_26 (AC020889) T1N15.2 [Arabidopsis thaliana]
Length = 1123
Score = 29.6 bits (65), Expect = 7.2
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 86 LVLRSTPDLRVWRVVLFELLVADVGHSFFMSELG 187
+VLR P R W ++L+ + VG SF+ ++G
Sbjct: 368 IVLRELPTSRYWLLILWIIRYIPVGRSFYSPDIG 401
>gb|AAF02988.1|AF092395_1 (AF092395) NADH dehydrogenase subunit II [Rivulus deltaphilus]
Length = 348
Score = 29.6 bits (65), Expect = 7.2
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +2
Query: 23 ATSVAMSQLANMYFFFALNEALVLRSTPD 109
AT+ A+S L ++YF+ L+ A+ L S+P+
Sbjct: 278 ATTAALSALLSLYFYLRLSYAMTLTSSPN 306
>gb|AAF02946.1|AF092374_1 (AF092374) NADH dehydrogenase subunit II [Rivulus tecminae]
Length = 348
Score = 29.6 bits (65), Expect = 7.2
Identities = 14/39 (35%), Positives = 24/39 (60%), Gaps = 4/39 (10%)
Frame = +2
Query: 23 ATSVAMSQLANMYFFFALNEALVLRSTPD----LRVWRV 127
AT A+S L ++YF+ L+ A+ L S+P+ + WR+
Sbjct: 278 ATMAALSALLSLYFYLRLSYAMTLTSSPNNTSAMLPWRI 316
>gb|AAF02994.1|AF092398_1 (AF092398) NADH dehydrogenase subunit II [Rivulus stagnatus]
Length = 348
Score = 29.6 bits (65), Expect = 7.2
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +2
Query: 23 ATSVAMSQLANMYFFFALNEALVLRSTPD 109
AT+ A+S L ++YF+ L+ A+ L S+P+
Sbjct: 278 ATTAALSALLSLYFYLRLSYAMTLTSSPN 306
>gb|AAF02986.1|AF092394_1 (AF092394) NADH dehydrogenase subunit II [Rivulus cryptocalus]
Length = 348
Score = 29.6 bits (65), Expect = 7.2
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +2
Query: 23 ATSVAMSQLANMYFFFALNEALVLRSTPD 109
AT+ A+S L ++YF+ L+ A+ L S+P+
Sbjct: 278 ATTAALSALLSLYFYLRLSYAMTLTSSPN 306
>gb|AAF02990.1|AF092396_1 (AF092396) NADH dehydrogenase subunit II [Rivulus sp. strain
Supamo]
Length = 348
Score = 29.6 bits (65), Expect = 7.2
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +2
Query: 23 ATSVAMSQLANMYFFFALNEALVLRSTPD 109
AT+ A+S L ++YF+ L+ A+ L S+P+
Sbjct: 278 ATTAALSTLLSLYFYLRLSYAMTLTSSPN 306
>ref|XP_092103.1| (XM_092103) hypothetical protein XP_092103 [Homo sapiens]
Length = 497
Score = 29.6 bits (65), Expect = 7.2
Identities = 20/69 (28%), Positives = 29/69 (41%), Gaps = 10/69 (14%)
Frame = -1
Query: 193 PRSQLAHEERVSHVRHEKLKQ--------HNPPDS--QVWRRPQHERLIEREEEVHISEL 44
P L E + ++RH K K P S Q W+ H + R+ E H L
Sbjct: 54 PPQTLQGESHLVNLRHGKAKALWSTSAMARGEPSSRLQTWQGKSH---VTRQGESHHVNL 110
Query: 43 RHGNRCSLW 17
+HGN ++W
Sbjct: 111 KHGNTKAIW 119
>pir||JC4131 glioma pathogenesis-related protein - human
gb|AAA82731.1| (U16307) glioma pathogenesis-related protein [Homo sapiens]
Length = 219
Score = 29.3 bits (64), Expect = 9.5
Identities = 16/51 (31%), Positives = 20/51 (38%), Gaps = 1/51 (1%)
Frame = -2
Query: 258 CKQGPG-KYPQWLAWHDLTSQYIPVPSSLMKNECPTSATRSSNSTTLQTLR 109
C GPG YP W T P + N C + SN TT+ +R
Sbjct: 163 CNYGPGGNYPTWPYKRGATCSACPNNDKCLDNLCVNDSETKSNVTTMLYIR 213
>pir||T12237 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - Cyprinodon
diabolis mitochondrion
gb|AAB84490.1| (AF028309) NADH dehydrogenase subunit 2 [Cyprinodon diabolis]
Length = 348
Score = 29.3 bits (64), Expect = 9.5
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 14 VPKATSVAMSQLANMYFFFALNEALVLRSTPD 109
VP AT A+S + +++F+ L+ A+ L TP+
Sbjct: 275 VPLATIAALSAILSLFFYLRLSYAMTLTMTPN 306
>gb|AAK38260.1|AF319782_54 (AF319782) ORF51 [callitrichine herpesvirus 3]
Length = 411
Score = 29.3 bits (64), Expect = 9.5
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 18/69 (26%)
Frame = -1
Query: 208 DIPVYPRSQLAHEERVSHVRHEKLKQHNPPDSQV------------------WRRPQHER 83
D P+Y RS L + HV K+ D ++ W+RP+HER
Sbjct: 60 DEPIYHRSPLCRQN--GHVETPTAKRGRSWDPEIRRADTPRPSNIQHRLYQRWQRPRHER 117
Query: 82 LIEREEEVH 56
+ E +H
Sbjct: 118 YVRARERLH 126
>sp|Q9WTQ2|PODX_RAT Podocalyxin precursor
dbj|BAA78375.1| (AB020726) podocalyxin [Rattus norvegicus]
Length = 485
Score = 29.3 bits (64), Expect = 9.5
Identities = 14/38 (36%), Positives = 23/38 (59%)
Frame = -2
Query: 192 PVPSSLMKNECPTSATRSSNSTTLQTLRSGVDRSTSAS 79
P P+S+ + AT+SSNS+ T S DR++S++
Sbjct: 63 PTPTSISTSSPDPKATQSSNSSVTTTSDSTTDRTSSST 100
>dbj|BAA06530.1| (D31732) nitrite reductase [Plectonema boryanum]
Length = 654
Score = 29.3 bits (64), Expect = 9.5
Identities = 14/38 (36%), Positives = 21/38 (54%)
Frame = -2
Query: 219 WHDLTSQYIPVPSSLMKNECPTSATRSSNSTTLQTLRS 106
W DL P P++L+ + PT T + STT+Q L +
Sbjct: 509 WSDLPESARPNPTALITLDRPTVETPNGKSTTVQELNA 546
>pir||T12234 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - Amargosa
pupfish mitochondrion
gb|AAB84487.1| (AF028306) NADH dehydrogenase subunit 2 [Cyprinodon nevadensis]
Length = 348
Score = 29.3 bits (64), Expect = 9.5
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 14 VPKATSVAMSQLANMYFFFALNEALVLRSTPD 109
VP AT A+S + +++F+ L+ A+ L TP+
Sbjct: 275 VPLATIAALSAILSLFFYLRLSYAMTLTMTPN 306
>gb|AAF14238.1|AF109393_1 (AF109393) podocalyxin [Rattus norvegicus]
Length = 485
Score = 29.3 bits (64), Expect = 9.5
Identities = 14/38 (36%), Positives = 23/38 (59%)
Frame = -2
Query: 192 PVPSSLMKNECPTSATRSSNSTTLQTLRSGVDRSTSAS 79
P P+S+ + AT+SSNS+ T S DR++S++
Sbjct: 63 PTPTSISTSSPDPKATQSSNSSVTTTSDSTTDRTSSST 100
>emb|CAA20350.1| (AL031282) dJ283E3.3.3 (Cell Division Cycle 2-Like 2 (PITSLRE,
p58/GTA, Galactosyltransferase Associated (Protein
Kinase)) isoform beta 2-1) [Homo sapiens]
Length = 778
Score = 29.3 bits (64), Expect = 9.5
Identities = 15/48 (31%), Positives = 25/48 (51%)
Frame = -1
Query: 205 IPVYPRSQLAHEERVSHVRHEKLKQHNPPDSQVWRRPQHERLIEREEE 62
+ + P Q++ +E+V H + EK K+ S +H R+ ERE E
Sbjct: 83 LAIKPPQQMSRKEKVHHRKDEKRKEKCRHHSHSAEGGKHARVKEREHE 130
>gb|AAL96552.1| (AF485465) immunoglobulin heavy chain variable region [Homo
sapiens]
Length = 122
Score = 29.3 bits (64), Expect = 9.5
Identities = 17/46 (36%), Positives = 23/46 (49%)
Frame = -2
Query: 255 KQGPGKYPQWLAWHDLTSQYIPVPSSLMKNECPTSATRSSNSTTLQ 118
+Q PGK P+WL++ TS I S +K S + NS LQ
Sbjct: 35 RQAPGKGPEWLSYISSTSDIIYYADS-VKGRFTISRDNAKNSLYLQ 79
>gb|AAA17954.1| (U00542) immunoglobulin heavy chain variable region [Homo sapiens]
Length = 118
Score = 29.3 bits (64), Expect = 9.5
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = -2
Query: 255 KQGPGKYPQWLAWHDLTSQYIPVPSSLMKNECPTSATRSSNSTTLQTLRSGVDRSTSASL 76
+Q PG+ +W+ W + P L T T +S STT LRS T+
Sbjct: 38 RQAPGQGLEWMGWISTSDGNTRYPQKLQGR--VTMTTDTSTSTTYMELRSLRPDDTAVYF 95
Query: 75 SAKKK 61
A+ K
Sbjct: 96 CARDK 100
>gb|AAB81511.1| (AF022650) kinesin like protein at 38B [Drosophila melanogaster]
Length = 1121
Score = 29.3 bits (64), Expect = 9.5
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = -2
Query: 222 AWHDLTSQYIPVPSSLMKNECPTSATRSSNSTTLQTLRSGVDRSTSASLSAKKKYILASC 43
A+ T Q P P++L P+S R+SNST + G +S S S + K+ ++ SC
Sbjct: 54 AFSGSTPQPKPKPTALNACYTPSSLYRNSNSTPGRAKTPGTGKS-SCSRTKKRDSLMESC 112
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: Mar 29, 2002 2:16 AM
Number of letters in database: 284,333,007
Number of sequences in database: 907,641
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,196,089
Number of Sequences: 907641
Number of extensions: 2636498
Number of successful extensions: 11772
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 11416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11749
length of database: 284,333,007
effective HSP length: 62
effective length of database: 228,059,265
effective search space used: 5473422360
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)