The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FgrNT3_0_G17.seq Fgr_0_G17 LENGTH:415bp ; DIRECTION:5 ;
CLONE:Fgr_0_G17 ; CLONELIB: n/a ; TISSUE:
(415 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
907,641 sequences; 284,333,007 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191030.1| (NM_115327) phosphate transport protein [A... 34 0.31
ref|NP_181428.1| (NM_129452) phosphate transporter (AtPT2) ... 33 0.68
emb|CAC28218.1| (AJ286743) phosphate transporter [Sesbania ... 32 0.89
ref|NP_189519.1| (NM_113798) hypothetical protein [Arabidop... 32 1.2
ref|NP_068934.1| (NC_000917) sulfate ABC transporter, perme... 31 2.0
sp|P34045|GBA7_DICDI GUANINE NUCLEOTIDE-BINDING PROTEIN ALP... 31 2.0
gb|AAL96734.1| (AC116029) Guanine nucleotide-binding protei... 31 2.0
sp|P81918|O43B_DROME ODORANT RECEPTOR 43B 31 2.6
ref|XP_015937.1| (XM_015937) hypothetical protein FLJ14299 ... 31 2.6
pir||T07894 probable inorganic phosphate transport protein ... 31 2.6
ref|XP_010769.5| (XM_010769) sodium channel, voltage-gated,... 31 2.6
ref|NP_523656.1| (NM_078932) Odorant receptor 43b; Olfactor... 31 2.6
ref|NP_002967.1| (NM_002976) sodium channel, voltage-gated,... 31 2.6
ref|NP_079345.1| (NM_025069) hypothetical protein FLJ14299 ... 31 2.6
gb|AAC33157.1| (AF019213) flagellar protein [Vibrio cholerae] 30 3.4
gb|AAK01938.1| (AY026321) phosphate transporter 1 [Lupinus ... 30 3.4
pir||T07892 probable inorganic phosphate transport protein ... 30 3.4
gb|AAK38196.1|AF305623_1 (AF305623) phosphate transporter 1... 30 3.4
pir||T03754 hypothetical protein E - slime mold (Physarum p... 30 4.4
ref|NP_231823.1| (NC_002505) flagellar protein FlgJ [Vibrio... 30 4.4
pir||A26445 nodulin-26 precursor - soybean 30 4.4
sp|Q9KQ15|FLGJ_VIBCH PEPTIDOGLYCAN HYDROLASE FLGJ (MURAMIDA... 30 4.4
pir||JQ2286 nodulin-26 - soybean 30 4.4
sp|P08995|NO26_SOYBN NODULIN-26 (N-26) >gi|18710|emb|CAA284... 30 4.4
pir||S01444 nodulin-26 precursor - soybean 30 4.4
ref|NP_075073.1| (NC_002654) hoar [Heliocoverpa armigera nu... 30 5.8
emb|CAB95377.1| (AL359782) conserved hypothetical protein C... 30 5.8
dbj|BAB70697.1| (AB073617) MSP-1 [Mizuhopecten yessoensis] 30 5.8
gb|AAB54092.1| (U67264) HOAR [Helicoverpa zea single nucleo... 30 5.8
pir||A55138 sodium channel mNa2.3, voltage-gated - mouse >g... 29 7.5
ref|NP_127506.1| (NC_002532) replicase ORF1ab polyprotein [... 29 9.8
sp|P19811|RPOA_EAV POL POLYPROTEIN (ORF1A/1B) [CONTAINS: RN... 29 9.8
ref|NP_116020.1| (NM_032631) hypothetical protein MGC2641 [... 29 9.8
gb|AAL08852.1|AF308677_1 (AF308677) hypothetical NADH dehyd... 29 9.8
>ref|NP_191030.1| (NM_115327) phosphate transport protein [Arabidopsis thaliana]
pir||T47629 phosphate transport protein - Arabidopsis thaliana
emb|CAB77590.1| (AL138650) phosphate transport protein [Arabidopsis thaliana]
Length = 535
Score = 33.9 bits (76), Expect = 0.31
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = -3
Query: 212 GVGNSLAILGIIDTAGKLFVVASVQT-GESAKDNNGENGENSAS 84
GV NSL +LG+++ G +F + ++ G+S ++ +GEN +N S
Sbjct: 477 GVKNSLIVLGVVNLLGMVFTLLVPESKGKSLEEMSGENEQNDES 520
>ref|NP_181428.1| (NM_129452) phosphate transporter (AtPT2) [Arabidopsis thaliana]
gb|AAB17266.1| (U62331) phosphate transporter [Arabidopsis thaliana]
gb|AAB88291.1| (AF022872) phosphate transporter [Arabidopsis thaliana]
dbj|BAA34398.1| (AB016166) Phosphate Transporter 4 [Arabidopsis thaliana]
gb|AAC79607.1| (AC005770) phosphate transporter (AtPT2) [Arabidopsis thaliana]
Length = 534
Score = 32.7 bits (73), Expect = 0.68
Identities = 17/44 (38%), Positives = 27/44 (60%), Gaps = 1/44 (2%)
Frame = -3
Query: 212 GVGNSLAILGIIDTAGKLFV-VASVQTGESAKDNNGENGENSAS 84
GV NSL +LG+++ G LF + G+S ++ +GEN +N S
Sbjct: 481 GVRNSLIVLGVVNFLGILFTFLVPESKGKSLEEMSGENEDNENS 524
>emb|CAC28218.1| (AJ286743) phosphate transporter [Sesbania rostrata]
Length = 536
Score = 32.3 bits (72), Expect = 0.89
Identities = 16/42 (38%), Positives = 29/42 (68%), Gaps = 1/42 (2%)
Frame = -3
Query: 212 GVGNSLAILGIIDTAGKLFVVASVQT-GESAKDNNGENGENS 90
G+ NSL +LG+I+ AG LF + ++ G+S ++ +GEN + +
Sbjct: 481 GIKNSLIMLGVINFAGMLFTLLVPESKGKSLEELSGENEDGA 522
>ref|NP_189519.1| (NM_113798) hypothetical protein [Arabidopsis thaliana]
dbj|BAB03174.1| (AP002057) gene_id:T19N8.6~unknown protein [Arabidopsis thaliana]
Length = 2081
Score = 32.0 bits (71), Expect = 1.2
Identities = 15/39 (38%), Positives = 25/39 (63%)
Frame = -3
Query: 143 VQTGESAKDNNGENGENSASPRVEGADDGLHDGRLKEKL 27
V+ GE+ K+NNGEN E++ VEG + + D +++ L
Sbjct: 256 VENGET-KENNGENVESNNEKEVEGQGESIGDSAIEKNL 293
>ref|NP_068934.1| (NC_000917) sulfate ABC transporter, permease protein (cysT)
[Archaeoglobus fulgidus]
pir||E69261 sulfate ABC transporter, permease protein (cysT) homolog -
Archaeoglobus fulgidus
gb|AAB91136.1| (AE001100) sulfate ABC transporter, permease protein (cysT)
[Archaeoglobus fulgidus]
Length = 261
Score = 31.2 bits (69), Expect = 2.0
Identities = 21/83 (25%), Positives = 40/83 (47%)
Frame = +3
Query: 51 MKPVVSAFNAWGCTVLSVFAIIILSALAGLYRSNHEEFTGGVNDPEDGKAVSNTIFTAVL 230
M+ + SA A +++ +F ++ ++A L N +EF +DP K V T + A++
Sbjct: 1 MRLLFSALLALLSSIILLFVLLPVAATVTLQLFNFDEFLKAASDPAVWKVVLTTYYAALI 60
Query: 231 VYVAFFVFCGLQGLLHARESRRG 299
+ +F + AR+S G
Sbjct: 61 STLIAVIFGTPLAYILARKSFPG 83
>sp|P34045|GBA7_DICDI GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-7 SUBUNIT (G ALPHA 7)
gb|AAA67423.1| (L33847) G protein alpha-7 subunit [Dictyostelium discoideum]
Length = 390
Score = 31.2 bits (69), Expect = 2.0
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -1
Query: 190 SSGSLTPPVNSSWLLRYRPARALRIIM---AKTERTVHPHALKALTTGFMTGD*RRSSVI 20
S+ +L+PP++ S L RYR +A+ + K E+ + LK L G TGD +S+V+
Sbjct: 31 STSTLSPPMSPSLLTRYREQKAVNKQIEKQLKEEKKIMDSELKLLLLG--TGDSGKSTVV 88
>gb|AAL96734.1| (AC116029) Guanine nucleotide-binding protein alpha-7 subunit
[Dictyostelium discoideum]
Length = 390
Score = 31.2 bits (69), Expect = 2.0
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -1
Query: 190 SSGSLTPPVNSSWLLRYRPARALRIIM---AKTERTVHPHALKALTTGFMTGD*RRSSVI 20
S+ +L+PP++ S L RYR +A+ + K E+ + LK L G TGD +S+V+
Sbjct: 31 STSTLSPPMSPSLLTRYREQKAVNKQIEKQLKEEKKIMDSELKLLLLG--TGDSGKSTVV 88
>sp|P81918|O43B_DROME ODORANT RECEPTOR 43B
Length = 403
Score = 30.8 bits (68), Expect = 2.6
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Frame = +3
Query: 27 ELLLQSPVMKPVVSAFNAWGCTVLSVFAIIILSALAGLYRSNHEEFTGGVNDPEDGKAVS 206
ELLLQS + N W C L F +I+ + L + +E P + + V
Sbjct: 78 ELLLQSLQL-----CLNTW-CFALKFFTLIVYTHRLELANKHFDELDKYCVKPAEKRKVR 131
Query: 207 NTI-------FTAVLVYVAFFVFCGLQGLLHAR 284
+ + T V+VYV + L GLLH R
Sbjct: 132 DMVATITRLYLTFVVVYVLYATSTLLDGLLHHR 164
>ref|XP_015937.1| (XM_015937) hypothetical protein FLJ14299 [Homo sapiens]
Length = 258
Score = 30.8 bits (68), Expect = 2.6
Identities = 15/47 (31%), Positives = 26/47 (54%)
Frame = -1
Query: 199 ALPSSGSLTPPVNSSWLLRYRPARALRIIMAKTERTVHPHALKALTT 59
A+P++ SL PP + P R L+++ A T +HP L+ L++
Sbjct: 28 AVPAAVSLLPPADPLRQANRLPIRVLKMLSAHTGHLLHPEYLQPLSS 74
>pir||T07894 probable inorganic phosphate transport protein PT2 - barrel medic
gb|AAB81347.1| (AF000355) phosphate transporter [Medicago truncatula]
Length = 533
Score = 30.8 bits (68), Expect = 2.6
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = -3
Query: 212 GVGNSLAILGIIDTAGKLFVVASVQT-GESAKDNNGEN-GENSASPRVEGA 66
G+ NSL +LG+I+ G L + ++ G+S ++ +GEN GE + + EG+
Sbjct: 481 GIKNSLIMLGVINFVGMLCTLLVPESKGKSLEELSGENEGEGAEATEQEGS 531
>ref|XP_010769.5| (XM_010769) sodium channel, voltage-gated, type VI, alpha polypeptide
[Homo sapiens]
Length = 1682
Score = 30.8 bits (68), Expect = 2.6
Identities = 20/78 (25%), Positives = 40/78 (50%)
Frame = +3
Query: 48 VMKPVVSAFNAWGCTVLSVFAIIILSALAGLYRSNHEEFTGGVNDPEDGKAVSNTIFTAV 227
+M P++ + A +L +F ++ + A+ G+Y + + G+ND + + N++
Sbjct: 1369 LMLPLMLSLPALLNIILLIFLVMFIYAVFGMYNFAYVKKEAGINDVSNFETFGNSML--C 1426
Query: 228 LVYVAFFVFCGLQGLLHA 281
L VA +F G G+L A
Sbjct: 1427 LFQVA--IFAGWDGMLDA 1442
>ref|NP_523656.1| (NM_078932) Odorant receptor 43b; Olfactory receptor 25A.1
[Drosophila melanogaster]
gb|AAF59173.1| (AE003839) Or43b gene product [Drosophila melanogaster]
Length = 424
Score = 30.8 bits (68), Expect = 2.6
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Frame = +3
Query: 27 ELLLQSPVMKPVVSAFNAWGCTVLSVFAIIILSALAGLYRSNHEEFTGGVNDPEDGKAVS 206
ELLLQS + N W C L F +I+ + L + +E P + + V
Sbjct: 78 ELLLQSLQL-----CLNTW-CFALKFFTLIVYTHRLELANKHFDELDKYCVKPAEKRKVR 131
Query: 207 NTI-------FTAVLVYVAFFVFCGLQGLLHAR 284
+ + T V+VYV + L GLLH R
Sbjct: 132 DMVATITRLYLTFVVVYVLYATSTLLDGLLHHR 164
>ref|NP_002967.1| (NM_002976) sodium channel, voltage-gated, type VI, alpha
polypeptide; sodium channel, voltage-gated, type VII,
alpha polypeptide [Homo sapiens]
sp|Q01118|CIN6_HUMAN Sodium channel protein, cardiac and skeletal muscle alpha-subunit
pir||A45380 sodium channel protein alpha chain hNav2.1 - human
gb|AAA59899.1| (M91556) Na+ channel [Homo sapiens]
Length = 1682
Score = 30.8 bits (68), Expect = 2.6
Identities = 20/78 (25%), Positives = 40/78 (50%)
Frame = +3
Query: 48 VMKPVVSAFNAWGCTVLSVFAIIILSALAGLYRSNHEEFTGGVNDPEDGKAVSNTIFTAV 227
+M P++ + A +L +F ++ + A+ G+Y + + G+ND + + N++
Sbjct: 1369 LMLPLMLSLPALLNIILLIFLVMFIYAVFGMYNFAYVKKEAGINDVSNFETFGNSML--C 1426
Query: 228 LVYVAFFVFCGLQGLLHA 281
L VA +F G G+L A
Sbjct: 1427 LFQVA--IFAGWDGMLDA 1442
>ref|NP_079345.1| (NM_025069) hypothetical protein FLJ14299 [Homo sapiens]
dbj|BAB14897.1| (AK024361) unnamed protein product [Homo sapiens]
Length = 590
Score = 30.8 bits (68), Expect = 2.6
Identities = 15/47 (31%), Positives = 26/47 (54%)
Frame = -1
Query: 199 ALPSSGSLTPPVNSSWLLRYRPARALRIIMAKTERTVHPHALKALTT 59
A+P++ SL PP + P R L+++ A T +HP L+ L++
Sbjct: 28 AVPAAVSLLPPADPLRQANRLPIRVLKMLSAHTGHLLHPEYLQPLSS 74
>gb|AAC33157.1| (AF019213) flagellar protein [Vibrio cholerae]
Length = 334
Score = 30.4 bits (67), Expect = 3.4
Identities = 17/46 (36%), Positives = 25/46 (53%)
Frame = -3
Query: 203 NSLAILGIIDTAGKLFVVASVQTGESAKDNNGENGENSASPRVEGA 66
+S LG+ D +VA + TG++A + GE+G A RVE A
Sbjct: 88 SSCGSLGLAD-----MIVAQLSTGQTASEQKGEDGFQEAMRRVEHA 128
>gb|AAK01938.1| (AY026321) phosphate transporter 1 [Lupinus albus]
Length = 543
Score = 30.4 bits (67), Expect = 3.4
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -3
Query: 212 GVGNSLAILGIIDTAGKLFV-VASVQTGESAKDNNGENGENSASPRVEGA 66
GV NSL +LG+++ G F + G+S ++ +GEN E P EG+
Sbjct: 478 GVKNSLIVLGVVNILGFCFTFLVPEPNGKSLEEMSGENEEE--EPTKEGS 525
>pir||T07892 probable inorganic phosphate transport protein PT1 - barrel medic
gb|AAB81346.1| (AF000354) phosphate transporter [Medicago truncatula]
Length = 537
Score = 30.4 bits (67), Expect = 3.4
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = -3
Query: 212 GVGNSLAILGIIDTAGKLFVVASVQT-GESAKDNNGEN-GENSASPRVEG 69
G+ NSL +LG+I+ G L + ++ G+S ++ +GEN GE + + EG
Sbjct: 481 GIKNSLIMLGVINFVGMLCTLLVPESKGKSLEELSGENEGEGAEATEQEG 530
>gb|AAK38196.1|AF305623_1 (AF305623) phosphate transporter 1 [Lupinus albus]
Length = 540
Score = 30.4 bits (67), Expect = 3.4
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -3
Query: 212 GVGNSLAILGIIDTAGKLFV-VASVQTGESAKDNNGENGENSASPRVEGA 66
GV NSL +LG+++ G F + G+S ++ +GEN E P EG+
Sbjct: 478 GVKNSLIVLGVVNILGFCFTFLVPEPNGKSLEEMSGENEEE--EPTKEGS 525
>pir||T03754 hypothetical protein E - slime mold (Physarum polycephalum)
mitochondrion integrated plasmid mF
dbj|BAA06115.1| (D29637) ORF-640 [Physarum polycephalum]
gb|AAC15934.1| (AF012249) unassigned reading frame [Physarum polycephalum]
gb|AAC15942.1| (AF012250) unassigned reading frame [Physarum polycephalum]
Length = 640
Score = 30.0 bits (66), Expect = 4.4
Identities = 12/48 (25%), Positives = 28/48 (58%)
Frame = -3
Query: 164 KLFVVASVQTGESAKDNNGENGENSASPRVEGADDGLHDGRLKEKLGN 21
KL++ ++V+ ++ + +N + PRV +DD ++ G + +LG+
Sbjct: 583 KLYIASTVRLTQNVRTDNANISMGTYVPRVFSSDDPVYAGLISRRLGS 630
>ref|NP_231823.1| (NC_002505) flagellar protein FlgJ [Vibrio cholerae]
pir||G82105 flagellar protein FlgJ VC2192 [imported] - Vibrio cholerae (group
O1 strain N16961)
gb|AAF95337.1| (AE004291) flagellar protein FlgJ [Vibrio cholerae]
Length = 312
Score = 30.0 bits (66), Expect = 4.4
Identities = 17/46 (36%), Positives = 25/46 (53%)
Frame = -3
Query: 203 NSLAILGIIDTAGKLFVVASVQTGESAKDNNGENGENSASPRVEGA 66
+S LG+ D +VA + TG++A + GE+G A RVE A
Sbjct: 88 SSSGSLGLAD-----MIVAQLSTGQTASEQKGEDGFQEAMRRVEHA 128
>pir||A26445 nodulin-26 precursor - soybean
Length = 205
Score = 30.0 bits (66), Expect = 4.4
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 108 AIIILSALAGLYRSNHEEFTGGVNDPEDGKAVSNTIFTAVLVYVAFFVFCGL 263
+I+ L L+ NH++F+G V +G + +F ++ + FV CG+
Sbjct: 60 SILASGTLRLLFMGNHDQFSGTV---PNGTNLQAFVFEFIMTFFLMFVICGV 108
>sp|Q9KQ15|FLGJ_VIBCH PEPTIDOGLYCAN HYDROLASE FLGJ (MURAMIDASE FLGJ)
Length = 334
Score = 30.0 bits (66), Expect = 4.4
Identities = 17/46 (36%), Positives = 25/46 (53%)
Frame = -3
Query: 203 NSLAILGIIDTAGKLFVVASVQTGESAKDNNGENGENSASPRVEGA 66
+S LG+ D +VA + TG++A + GE+G A RVE A
Sbjct: 88 SSSGSLGLAD-----MIVAQLSTGQTASEQKGEDGFQEAMRRVEHA 128
>pir||JQ2286 nodulin-26 - soybean
Length = 271
Score = 30.0 bits (66), Expect = 4.4
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 108 AIIILSALAGLYRSNHEEFTGGVNDPEDGKAVSNTIFTAVLVYVAFFVFCGL 263
+I+ L L+ NH++F+G V +G + +F ++ + FV CG+
Sbjct: 126 SILASGTLRLLFMGNHDQFSGTV---PNGTNLQAFVFEFIMTFFLMFVICGV 174
>sp|P08995|NO26_SOYBN NODULIN-26 (N-26)
emb|CAA28471.1| (X04782) nodulin [Glycine max]
Length = 271
Score = 30.0 bits (66), Expect = 4.4
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 108 AIIILSALAGLYRSNHEEFTGGVNDPEDGKAVSNTIFTAVLVYVAFFVFCGL 263
+I+ L L+ NH++F+G V +G + +F ++ + FV CG+
Sbjct: 126 SILASGTLRLLFMGNHDQFSGTV---PNGTNLQAFVFEFIMTFFLMFVICGV 174
>pir||S01444 nodulin-26 precursor - soybean
Length = 271
Score = 30.0 bits (66), Expect = 4.4
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 108 AIIILSALAGLYRSNHEEFTGGVNDPEDGKAVSNTIFTAVLVYVAFFVFCGL 263
+I+ L L+ NH++F+G V +G + +F ++ + FV CG+
Sbjct: 126 SILASGTLRLLFMGNHDQFSGTV---PNGTNLQAFVFEFIMTFFLMFVICGV 174
>ref|NP_075073.1| (NC_002654) hoar [Heliocoverpa armigera nucleopolyhedrovirus G4]
ref|NP_542627.1| (NC_003349) hoar [Helicoverpa zea single nucleocapsid
nucleopolyhedrovirus]
gb|AAG53747.1|AF271059_4 (AF271059) hoar [Heliocoverpa armigera nucleopolyhedrovirus G4]
gb|AAL56149.1|AF334030_74 (AF334030) ORF4 [Helicoverpa zea single nucleocapsid
nucleopolyhedrovirus]
Length = 756
Score = 29.6 bits (65), Expect = 5.8
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 215 DGVGNSLAILGIIDTAGKLFVVASVQTGESAKDNNGENGENSASP 81
D + LA +D GK F +V+T +++KD N + N A+P
Sbjct: 603 DSIDKELAKSTNVDKNGKYFEHITVKTEKTSKDANTTDNNNDAAP 647
>emb|CAB95377.1| (AL359782) conserved hypothetical protein CHR1.67 [Trypanosoma
brucei]
Length = 2186
Score = 29.6 bits (65), Expect = 5.8
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Frame = -3
Query: 233 DQDGCEDGV---GNSLAILGIIDTAGKLFVVASVQTGE---SAKDNNGENGENSASPRVE 72
++DG DG GN L G+ D + V ++T + SAKD N E E + +
Sbjct: 1318 EEDGDGDGESRDGNQLDGTGMDDGQVRKDVTDQIETEDQLMSAKDKNDEEQEEKQQDKGD 1377
Query: 71 GADDG 57
G+ DG
Sbjct: 1378 GSSDG 1382
>dbj|BAB70697.1| (AB073617) MSP-1 [Mizuhopecten yessoensis]
Length = 840
Score = 29.6 bits (65), Expect = 5.8
Identities = 24/89 (26%), Positives = 32/89 (34%), Gaps = 4/89 (4%)
Frame = -3
Query: 296 SSAFSGVXXXXXXXXXXESNVDQDGCEDGVGNSLAILGIIDTAGKLFVVASVQTGESAKD 117
SS+ SG + DG +DG + D A D
Sbjct: 641 SSSGSGSGSGSSSSSSSSGDGSDDGSDDGSDDG-------DDANSANADDLDSNDPDDSD 693
Query: 116 NNGENGE----NSASPRVEGADDGLHDGR 42
N+G NGE NS+S +G+D G GR
Sbjct: 694 NSGSNGESDSDNSSSDDGDGSDSGSDSGR 722
>gb|AAB54092.1| (U67264) HOAR [Helicoverpa zea single nucleocapsid
nucleopolyhedrovirus]
Length = 712
Score = 29.6 bits (65), Expect = 5.8
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 215 DGVGNSLAILGIIDTAGKLFVVASVQTGESAKDNNGENGENSASP 81
D + LA +D GK F +V+T +++KD N + N A+P
Sbjct: 603 DSIDKELAKSTNVDKNGKYFEHITVKTEKTSKDANTTDNNNDAAP 647
>pir||A55138 sodium channel mNa2.3, voltage-gated - mouse
gb|AAA66192.1| (L36179) voltage-gated sodium channel protein [Mus musculus]
Length = 1681
Score = 29.3 bits (64), Expect = 7.5
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +3
Query: 48 VMKPVVSAFNAWGCTVLSVFAIIILSALAGLYRSNHEEFTGGVNDPEDGKAVSN--TIFT 221
+M P++ A A L +F ++ + A+ G+Y + + G+ND VSN T +
Sbjct: 1369 LMLPLILALPALLNISLLIFLVMFIYAIFGMYNFAYVKKEAGIND------VSNFETFGS 1422
Query: 222 AVLVYVAFFVFCGLQGLLHA 281
++L F G G+L A
Sbjct: 1423 SMLCLFQVTTFSGWDGMLDA 1442
>ref|NP_127506.1| (NC_002532) replicase ORF1ab polyprotein [Equine arteritis virus]
emb|CAA69187.2| (Y07862) replicase ORF1b polyprotein [Cloning vector pEAV030]
emb|CAC42775.2| (X53459) replicase ORF1b polyprotein [Equine arteritis virus]
Length = 3175
Score = 28.9 bits (63), Expect = 9.8
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 168 GGVNDPEDGKAVSNTIFTAVLVYVAFFVFCGLQG 269
GG++ + ++SNTI++ VL Y + CGL+G
Sbjct: 2175 GGLSSGDPITSISNTIYSLVL-YTQHMLLCGLEG 2207
>sp|P19811|RPOA_EAV POL POLYPROTEIN (ORF1A/1B) [CONTAINS: RNA-DIRECTED RNA POLYMERASE ;
HELICASE; PROTEASE ]
pir||RRWVEV genome polyprotein - equine arteritis virus
Length = 3175
Score = 28.9 bits (63), Expect = 9.8
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 168 GGVNDPEDGKAVSNTIFTAVLVYVAFFVFCGLQG 269
GG++ + ++SNTI++ VL Y + CGL+G
Sbjct: 2175 GGLSSGDPITSISNTIYSLVL-YTQHMLLCGLEG 2207
>ref|NP_116020.1| (NM_032631) hypothetical protein MGC2641 [Homo sapiens]
gb|AAH00755.1|AAH00755 (BC000755) Similar to hepatoma-derived growth factor, related
protein 2 [Homo sapiens]
Length = 670
Score = 28.9 bits (63), Expect = 9.8
Identities = 15/36 (41%), Positives = 20/36 (54%)
Frame = -3
Query: 149 ASVQTGESAKDNNGENGENSASPRVEGADDGLHDGR 42
A+ Q GESA+D E G +S G+ + LHD R
Sbjct: 606 ATSQKGESAEDKEHEEGRDSEEGPRCGSSEDLHDVR 641
>gb|AAL08852.1|AF308677_1 (AF308677) hypothetical NADH dehydrogenase [Cowdria ruminantium]
Length = 492
Score = 28.9 bits (63), Expect = 9.8
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 18 KITELL-LQSPVMKPVVSAFNAWGCTVLSVFAIIILSALAGLY 143
KI E + L+SP K V+S+F VL ++ ++I S + G+Y
Sbjct: 433 KIVEAVCLRSPDNKVVMSSFETPNVMVLCIWIMVIASIIVGIY 475
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: Mar 29, 2002 2:16 AM
Number of letters in database: 284,333,007
Number of sequences in database: 907,641
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 179,793,550
Number of Sequences: 907641
Number of extensions: 3038604
Number of successful extensions: 12825
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 12481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12807
length of database: 284,333,007
effective HSP length: 113
effective length of database: 181,769,574
effective search space used: 4362469776
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)