The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FgrNT3_0_G19.seq Fgr_0_G19 LENGTH:283bp ; DIRECTION:5 ;
CLONE:Fgr_0_G19 ; CLONELIB: n/a ; TISSUE:
(283 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
907,641 sequences; 284,333,007 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_596561.1| (NC_003423) Synaptobrevin-like V snare pro... 120 3e-27
emb|CAA21982.1| (AL033497) probable snare protein [Candida ... 100 3e-21
ref|NP_012725.1| (NC_001143) Synaptobrevin (v-SNARE) homolo... 99 1e-20
pdb|1H8M|A Chain A, Solution Structure Of Ykt6 99 1e-20
ref|NP_572423.1| (NM_132195) CG1515 gene product [Drosophil... 86 6e-17
gb|AAC72948.1| (AF091079) SNARE protein Ykt6 [Homo sapiens] 77 3e-14
ref|NP_006546.1| (NM_006555) SNARE protein [Homo sapiens] >... 77 3e-14
ref|NP_062635.1| (NM_019661) prenylated SNARE protein [Mus ... 76 9e-14
dbj|BAB22455.1| (AK002916) data source:MGD, source key:MGI:... 75 1e-13
ref|NP_113880.1| (NM_031692) prenylated SNARE protein [Ratt... 74 4e-13
pir||JE0228 Xsnare 1 protein - African clawed frog >gi|3172... 69 8e-12
ref|NP_498605.1| (NM_066204) synaptobrevin [Caenorhabditis ... 68 2e-11
gb|AAD00116.1| (U64922) NTGP1 [Nicotiana tabacum] 67 3e-11
ref|NP_200626.1| (NM_125203) ATGP1-like protein [Arabidopsi... 65 1e-10
ref|NP_200614.1| (NM_125191) ATGP1 [Arabidopsis thaliana] >... 64 4e-10
ref|NP_596218.1| (NC_003423) putative synaptobrevin-type pr... 35 0.22
gb|AAG59802.1|AF305499_1 (AF305499) Otx [Ciona intestinalis] 33 0.64
pir||T30886 integumentary mucin B.1 - African clawed frog (... 32 1.1
dbj|BAB68341.1| (AB057732) Cs-OTX [Ciona savignyi] 32 1.4
ref|NP_297395.1| (NC_002488) conserved hypothetical protein... 32 1.4
dbj|BAB16912.1| (AP002863) hypothetical protein [Oryza sati... 31 3.2
gb|AAK62517.1| (AY034092) putative hydroxyproline-rich prot... 30 4.1
ref|NP_250283.1| (NC_002516) hypothetical protein [Pseudomo... 30 5.4
gb|AAD56218.2| (AF177533) tight junction protein ZO-2 isofo... 30 7.0
gb|AAC02527.2| (AF177533) tight junction protein ZO-2 isofo... 30 7.0
gb|AAD56219.2| (AF177533) tight junction protein ZO-2 isofo... 30 7.0
ref|NP_004808.1| (NM_004817) tight junction protein 2 (zona... 30 7.0
ref|XP_005446.3| (XM_005446) tight junction protein 2 (zona... 30 7.0
sp|Q9UDY2|ZO2_HUMAN TIGHT JUNCTION PROTEIN ZO-2 (ZONULA OCC... 30 7.0
emb|CAC32257.1| (AL583932) hypothetical protein L5213.09 [L... 26 7.3
>ref|NP_596561.1| (NC_003423) Synaptobrevin-like V snare protein [Schizosaccharomyces
pombe]
pir||T39412 hypothetical protein SPBC13G1.11 - fission yeast
(Schizosaccharomyces pombe)
emb|CAA18664.1| (AL022600) Synaptobrevin-like V snare protein [Schizosaccharomyces
pombe]
Length = 197
Score = 120 bits (301), Expect = 3e-27
Identities = 52/90 (57%), Positives = 71/90 (78%)
Frame = +3
Query: 9 ELSSYSRFTRNNYGEFMTLFAKTVAERTRPGQRQDVEEQDYTFHAYGRTEGVCGIIISDH 188
+LSS+S F R++ GEFM F KTVAERT PGQRQDVE+ +Y FH Y R++G+CG+I SD
Sbjct: 24 DLSSFSFFQRSSIGEFMNFFTKTVAERTNPGQRQDVEQSNYVFHVYNRSDGLCGVIASDK 83
Query: 189 QYPALVAHQVVNKVDDKFLSKNPRSSWGTG 278
+YP VA+ ++NK+ D+FL+KNPR+ W +G
Sbjct: 84 EYPLRVAYTLLNKILDEFLTKNPRTKWESG 113
>emb|CAA21982.1| (AL033497) probable snare protein [Candida albicans]
Length = 200
Score = 100 bits (249), Expect = 3e-21
Identities = 44/88 (50%), Positives = 65/88 (73%)
Frame = +3
Query: 6 KELSSYSRFTRNNYGEFMTLFAKTVAERTRPGQRQDVEEQDYTFHAYGRTEGVCGIIISD 185
++LS +S F RN +FMT FA+TV++RT+PGQRQ VEE +Y H Y R+EG+ GIII+D
Sbjct: 23 RDLSQFSFFERNGVSQFMTFFAETVSQRTQPGQRQSVEEGNYIGHTYTRSEGISGIIITD 82
Query: 186 HQYPALVAHQVVNKVDDKFLSKNPRSSW 269
YP A+ ++NK+ +++LS +P+S W
Sbjct: 83 KDYPVRPAYTLINKILEEYLSLHPKSDW 110
>ref|NP_012725.1| (NC_001143) Synaptobrevin (v-SNARE) homolog with similarity to
Sec22p, Snc1p, and Snc2p, essential for endoplasmic
reticulum-Golgi transport; Ykt6p [Saccharomyces
cerevisiae]
sp|P36015|YKT6_YEAST Hypothetical 22.7 kDa protein in PAS1-MST1 intergenic region
pir||S38033 cell division control protein SLY2 homolog YKL196c - yeast
(Saccharomyces cerevisiae)
emb|CAA82040.1| (Z28196) ORF YKL196c [Saccharomyces cerevisiae]
gb|AAB32050.1| p26, Ykt6, YKL196c product=putative farnesylated VAMP
homolog/v-SNARE component of ER-Golgi docking complex
[Saccharomyces cerevisiae, Peptide, 200 aa]
Length = 200
Score = 98.6 bits (244), Expect = 1e-20
Identities = 42/92 (45%), Positives = 64/92 (68%)
Frame = +3
Query: 6 KELSSYSRFTRNNYGEFMTLFAKTVAERTRPGQRQDVEEQDYTFHAYGRTEGVCGIIISD 185
K+LS + F R++ G+FMT FA+TVA RT GQRQ +EE +Y H Y R+EG+CG++I+D
Sbjct: 23 KDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQSIEEGNYIGHVYARSEGICGVLITD 82
Query: 186 HQYPALVAHQVVNKVDDKFLSKNPRSSWGTGT 281
+YP A+ ++NK+ D++L +P+ W T
Sbjct: 83 KEYPVRPAYTLLNKILDEYLVAHPKEEWADVT 114
>pdb|1H8M|A Chain A, Solution Structure Of Ykt6
Length = 140
Score = 98.6 bits (244), Expect = 1e-20
Identities = 42/92 (45%), Positives = 64/92 (68%)
Frame = +3
Query: 6 KELSSYSRFTRNNYGEFMTLFAKTVAERTRPGQRQDVEEQDYTFHAYGRTEGVCGIIISD 185
K+LS + F R++ G+FMT FA+TVA RT G+RQ +EE +Y H Y R+EG+CG++I+D
Sbjct: 23 KDLSQFGFFERSSVGQFMTFFAETVASRTGAGERQSIEEGNYIGHVYARSEGICGVLITD 82
Query: 186 HQYPALVAHQVVNKVDDKFLSKNPRSSWGTGT 281
QYP A+ ++NK+ D++L +P+ W T
Sbjct: 83 KQYPVRPAYTLLNKILDEYLVAHPKEEWADVT 114
>ref|NP_572423.1| (NM_132195) CG1515 gene product [Drosophila melanogaster]
gb|AAF46294.1| (AE003442) CG1515 gene product [Drosophila melanogaster]
gb|AAL13360.1| (AY059454) LD34211p [Drosophila melanogaster]
Length = 199
Score = 86.3 bits (212), Expect = 6e-17
Identities = 38/91 (41%), Positives = 55/91 (59%)
Frame = +3
Query: 9 ELSSYSRFTRNNYGEFMTLFAKTVAERTRPGQRQDVEEQDYTFHAYGRTEGVCGIIISDH 188
+L S+S F R EFMT +KT+ ERT+P RQ V++ Y H Y R + + G++I+DH
Sbjct: 25 DLQSFSFFQRGTVNEFMTFASKTIVERTQPALRQSVKQDAYMCHVYVRADNLAGVLIADH 84
Query: 189 QYPALVAHQVVNKVDDKFLSKNPRSSWGTGT 281
+YP VAH ++ K+ D F +K W GT
Sbjct: 85 EYPHRVAHTLITKILDDFTAKVSADQWPNGT 115
>gb|AAC72948.1| (AF091079) SNARE protein Ykt6 [Homo sapiens]
Length = 191
Score = 77.4 bits (189), Expect = 3e-14
Identities = 35/91 (38%), Positives = 58/91 (63%)
Frame = +3
Query: 9 ELSSYSRFTRNNYGEFMTLFAKTVAERTRPGQRQDVEEQDYTFHAYGRTEGVCGIIISDH 188
++SS+S F R++ EFMT ++ + ER+ G R V+EQDY H Y R + + G++I+D+
Sbjct: 24 DVSSFSFFQRSSVQEFMTFTSQLIVERSSKGTRASVKEQDYLCHVYVRNDSLAGVVIADN 83
Query: 189 QYPALVAHQVVNKVDDKFLSKNPRSSWGTGT 281
+YP+ VA ++ KV D+F + R W G+
Sbjct: 84 EYPSRVAFTLLEKVLDEFSKQVDRIDWPVGS 114
>ref|NP_006546.1| (NM_006555) SNARE protein [Homo sapiens]
ref|XP_004993.1| (XM_004993) SNARE protein [Homo sapiens]
gb|AAB81131.1| (U95735) SNARE protein Ykt6 [Homo sapiens]
gb|AAH07319.1|AAH07319 (BC007319) SNARE protein [Homo sapiens]
Length = 198
Score = 77.4 bits (189), Expect = 3e-14
Identities = 35/91 (38%), Positives = 58/91 (63%)
Frame = +3
Query: 9 ELSSYSRFTRNNYGEFMTLFAKTVAERTRPGQRQDVEEQDYTFHAYGRTEGVCGIIISDH 188
++SS+S F R++ EFMT ++ + ER+ G R V+EQDY H Y R + + G++I+D+
Sbjct: 24 DVSSFSFFQRSSVQEFMTFTSQLIVERSSKGTRASVKEQDYLCHVYVRNDSLAGVVIADN 83
Query: 189 QYPALVAHQVVNKVDDKFLSKNPRSSWGTGT 281
+YP+ VA ++ KV D+F + R W G+
Sbjct: 84 EYPSRVAFTLLEKVLDEFSKQVDRIDWPVGS 114
>ref|NP_062635.1| (NM_019661) prenylated SNARE protein [Mus musculus]
gb|AAC26834.1| (AF076956) prenylated SNARE protein Ykt6 [Mus musculus]
Length = 198
Score = 75.9 bits (185), Expect = 9e-14
Identities = 34/91 (37%), Positives = 59/91 (64%)
Frame = +3
Query: 9 ELSSYSRFTRNNYGEFMTLFAKTVAERTRPGQRQDVEEQDYTFHAYGRTEGVCGIIISDH 188
++SS+S F R++ EFMT ++ + ER+ G R V+EQ+Y H Y R++ + G++I+D
Sbjct: 24 DVSSFSFFQRSSVQEFMTFTSQLIVERSGKGSRASVKEQEYLCHVYVRSDSLAGVVIADS 83
Query: 189 QYPALVAHQVVNKVDDKFLSKNPRSSWGTGT 281
+YP+ VA +++KV D+F + R W G+
Sbjct: 84 EYPSRVAFTLLDKVLDEFSKQVDRIDWPVGS 114
>dbj|BAB22455.1| (AK002916) data source:MGD, source key:MGI:1927550,
evidence:ISS~prenylated SNARE protein~putative [Mus
musculus]
dbj|BAB25062.1| (AK007486) data source:MGD, source key:MGI:1927550,
evidence:ISS~prenylated SNARE protein~putative [Mus
musculus]
gb|AAH06760.1|AAH06760 (BC006760) prenylated SNARE protein [Mus musculus]
Length = 198
Score = 75.5 bits (184), Expect = 1e-13
Identities = 34/91 (37%), Positives = 58/91 (63%)
Frame = +3
Query: 9 ELSSYSRFTRNNYGEFMTLFAKTVAERTRPGQRQDVEEQDYTFHAYGRTEGVCGIIISDH 188
++SS+S F R++ EFMT ++ + ER+ G R V+EQ+Y H Y R++ + G++I+D
Sbjct: 24 DVSSFSFFQRSSVQEFMTFTSQLIVERSGKGSRASVKEQEYLCHVYVRSDSLAGVVIADS 83
Query: 189 QYPALVAHQVVNKVDDKFLSKNPRSSWGTGT 281
+YP+ VA ++ KV D+F + R W G+
Sbjct: 84 EYPSRVAFTLLEKVLDEFSKQVDRIDWPVGS 114
>ref|NP_113880.1| (NM_031692) prenylated SNARE protein [Rattus norvegicus]
gb|AAD09152.1| (AF033027) prenylated SNARE protein Ykt6p [Rattus norvegicus]
Length = 198
Score = 73.6 bits (179), Expect = 4e-13
Identities = 33/91 (36%), Positives = 57/91 (62%)
Frame = +3
Query: 9 ELSSYSRFTRNNYGEFMTLFAKTVAERTRPGQRQDVEEQDYTFHAYGRTEGVCGIIISDH 188
++SS+S F R++ EFMT ++ + ER+ G R V+EQ+Y H Y R++ + G++I+D
Sbjct: 24 DVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRSDSLAGVVIADS 83
Query: 189 QYPALVAHQVVNKVDDKFLSKNPRSSWGTGT 281
+YP+ VA ++ KV D+F + W G+
Sbjct: 84 EYPSRVAFTLLEKVLDQFSKQVDTIDWPVGS 114
>pir||JE0228 Xsnare 1 protein - African clawed frog
gb|AAC32182.1| (AF067648) isoprenylated v-SNARE protein [Xenopus laevis]
Length = 198
Score = 69.3 bits (168), Expect = 8e-12
Identities = 30/91 (32%), Positives = 56/91 (60%)
Frame = +3
Query: 9 ELSSYSRFTRNNYGEFMTLFAKTVAERTRPGQRQDVEEQDYTFHAYGRTEGVCGIIISDH 188
++S +S F R++ EFM ++ + ER+ G R V+EQ+Y H Y R + + G++I+D+
Sbjct: 24 DVSPFSFFQRSSIQEFMAFTSQLIVERSDKGSRSSVKEQEYLCHVYVRNDSLAGVVIADN 83
Query: 189 QYPALVAHQVVNKVDDKFLSKNPRSSWGTGT 281
+YP V ++ KV ++F ++ R W +G+
Sbjct: 84 EYPPRVCFTLLEKVLEEFSTQVDRIDWPSGS 114
>ref|NP_498605.1| (NM_066204) synaptobrevin [Caenorhabditis elegans]
gb|AAK18869.1| (U00031) Hypothetical protein B0361.10 [Caenorhabditis elegans]
Length = 201
Score = 68.2 bits (165), Expect = 2e-11
Identities = 33/89 (37%), Positives = 51/89 (57%)
Frame = +3
Query: 3 EKELSSYSRFTRNNYGEFMTLFAKTVAERTRPGQRQDVEEQDYTFHAYGRTEGVCGIIIS 182
E +LSS+S F R + EFMT AK + ER+ G R V+E +Y H Y R +G+ + ++
Sbjct: 24 ECDLSSFSFFQRGSVQEFMTFTAKLLVERSGLGARSSVKENEYLVHCYVRNDGLSAVCVT 83
Query: 183 DHQYPALVAHQVVNKVDDKFLSKNPRSSW 269
D +Y VA + +V D F ++ P + W
Sbjct: 84 DAEYQQRVAMSFLGRVLDDFTTRVPATQW 112
>gb|AAD00116.1| (U64922) NTGP1 [Nicotiana tabacum]
Length = 199
Score = 67.4 bits (163), Expect = 3e-11
Identities = 34/89 (38%), Positives = 53/89 (59%)
Frame = +3
Query: 9 ELSSYSRFTRNNYGEFMTLFAKTVAERTRPGQRQDVEEQDYTFHAYGRTEGVCGIIISDH 188
++S + F R++ EF+ +TVA+R PGQRQ V+ ++Y H+Y R G+C + D
Sbjct: 26 DVSHFGYFQRSSVKEFIVFVGRTVAKRNPPGQRQSVQHEEYKVHSYNR-NGLCALGFMDD 84
Query: 189 QYPALVAHQVVNKVDDKFLSKNPRSSWGT 275
YP A ++N+V D++L KN SW T
Sbjct: 85 HYPVRSAFSLLNQVLDEYL-KNFGESWKT 112
>ref|NP_200626.1| (NM_125203) ATGP1-like protein [Arabidopsis thaliana]
dbj|BAA96909.1| (AB019228) ATGP1-like protein [Arabidopsis thaliana]
Length = 199
Score = 65.5 bits (158), Expect = 1e-10
Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Frame = +3
Query: 9 ELSSYSRFT--RNNYGEFMTLFAKTVAERTRPGQRQDVEEQDYTFHAYGRTEGVCGIIIS 182
+LS + +F+ R+N+ EF+ A+TVA RT PGQRQ V+ ++Y HAY G+C +
Sbjct: 26 DLSQFGKFSFYRSNFEEFIVFIARTVARRTPPGQRQSVKHEEYKVHAY-NINGLCAVGFM 84
Query: 183 DHQYPALVAHQVVNKVDDKFLSKNPRSSW 269
D YP A ++N+V D + K+ +W
Sbjct: 85 DDHYPVRSAFSLLNQVLDVY-QKDYGDTW 112
>ref|NP_200614.1| (NM_125191) ATGP1 [Arabidopsis thaliana]
gb|AAD00112.1| (U64918) ATGP1 [Arabidopsis thaliana]
dbj|BAB10997.1| (AB024029) ATGP1 [Arabidopsis thaliana]
gb|AAG40392.1|AF325040_1 (AF325040) AT5g58060 [Arabidopsis thaliana]
gb|AAK60295.1|AF385703_1 (AF385703) AT5g58060/k21l19_40 [Arabidopsis thaliana]
Length = 199
Score = 63.5 bits (153), Expect = 4e-10
Identities = 32/87 (36%), Positives = 50/87 (56%)
Frame = +3
Query: 9 ELSSYSRFTRNNYGEFMTLFAKTVAERTRPGQRQDVEEQDYTFHAYGRTEGVCGIIISDH 188
++S + F R++ EF+ +TVA RT P QRQ V+ ++Y HAY R G+C + D
Sbjct: 26 DVSHFGYFQRSSVKEFVVFVGRTVASRTPPSQRQSVQHEEYKVHAYNR-NGLCAVGFMDD 84
Query: 189 QYPALVAHQVVNKVDDKFLSKNPRSSW 269
YP A ++N+V D++ K+ SW
Sbjct: 85 HYPVRSAFSLLNQVLDEY-QKSFGESW 110
>ref|NP_596218.1| (NC_003423) putative synaptobrevin-type protein transport protein
[Schizosaccharomyces pombe]
pir||T40099 probable synaptobrevin-type protein transport protein - fission
yeast (Schizosaccharomyces pombe)
emb|CAB39850.1| (AL049495) putative synaptobrevin-type protein transport protein
[Schizosaccharomyces pombe]
Length = 209
Score = 34.7 bits (78), Expect = 0.22
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 69 AKTVAERTRPG--QRQDVEEQDYTFHAYGRTEGVCGIIISDHQYPALVAHQVVNKVDDKF 242
AK + +R P +R +E DYTFH Y G+C + I + YP +A + ++ +F
Sbjct: 29 AKLILKRLSPTSEKRASIESGDYTFH-YLIDNGICYLCICEQSYPRKLAFSYLEELAGEF 87
>gb|AAG59802.1|AF305499_1 (AF305499) Otx [Ciona intestinalis]
Length = 425
Score = 33.1 bits (74), Expect = 0.64
Identities = 17/45 (37%), Positives = 24/45 (52%)
Frame = +2
Query: 149 TY*GRLRHHHLRPPVPCPRGSPGCQQG*RQVSLQEPPLQLGHRNT 283
+Y G + +L P VP P +PGC G ++ Q+ QLGH T
Sbjct: 332 SYFGTMEASYL-PSVPFPGAAPGCGMGDMSMAGQQSAAQLGHHGT 375
>pir||T30886 integumentary mucin B.1 - African clawed frog (fragment)
emb|CAA69604.1| (Y08296) integumentary mucin B.1 [Xenopus laevis]
Length = 1506
Score = 32.3 bits (72), Expect = 1.1
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 10 SSAATRDSPATTMANS*PYSQRPSPNAPVPDSDRMSRSKTTLSTP 144
+ A T ++PATT+ P ++ P +A PD+D + + T TP
Sbjct: 79 AKATTAEAPATTVEPPAPTAETPVTDAAAPDTDSETPAATNSETP 123
>dbj|BAB68341.1| (AB057732) Cs-OTX [Ciona savignyi]
Length = 422
Score = 32.0 bits (71), Expect = 1.4
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +2
Query: 149 TY*GRLRHHHLRPPVPCPRGSPGCQQG*RQVSLQEPPLQLGH 274
+Y G + +L P VP P +PGC G +S Q+ QLGH
Sbjct: 329 SYFGTMEASYL-PSVPFPGAAPGCGMGDMSMSGQQSASQLGH 369
>ref|NP_297395.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||C82847 conserved hypothetical protein XF0102 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF82915.1|AE003864_3 (AE003864) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 376
Score = 32.0 bits (71), Expect = 1.4
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = +2
Query: 53 IHDPIRKDRRRTHPSRTATGCRGARLHFPRLRTY*GRLRHHHLRPPVPC 199
+HD + + RRT P R T RG L R R Y R +R VPC
Sbjct: 148 VHDYVLRHYRRTDPQRLRTIPRGVDLARFRRRPYPDRSARRWVRKYVPC 196
>dbj|BAB16912.1| (AP002863) hypothetical protein [Oryza sativa (japonica
cultivar-group)]
Length = 270
Score = 30.8 bits (68), Expect = 3.2
Identities = 24/62 (38%), Positives = 28/62 (44%), Gaps = 1/62 (1%)
Frame = +2
Query: 77 RRRTHPSRTATGCR-GARLHFPRLRTY*GRLRHHHLRPPVPCPRGSPGCQQG*RQVSLQE 253
RR +ATG R G LH RLR R H RPP P R +P R++ Q
Sbjct: 2 RRSKSSLPSATGSRTGPALH--RLR------RRHRHRPPAPAARAAPPLGPTNRRLHQQP 53
Query: 254 PP 259
PP
Sbjct: 54 PP 55
>gb|AAK62517.1| (AY034092) putative hydroxyproline-rich protein [Micrococcus sp.
28]
Length = 406
Score = 30.4 bits (67), Expect = 4.1
Identities = 32/100 (32%), Positives = 39/100 (39%), Gaps = 25/100 (25%)
Frame = +2
Query: 35 PQQLWRIHDPIRKDRRRTHPSRTATG----------------------CRGAR-LHFPRL 145
P++ WR + P R R PSR G CR R LH PR
Sbjct: 236 PRRRWRPNQPARPASRPRPPSRQRPGQLRRTARASRHRPMPHPPELLPCRRCRQLHRPRT 295
Query: 146 RTY*GRLRHHH--LRPPVPCPRGSPGCQQG*RQVSLQEPP 259
R + R HH LRP PR P C + R +S + PP
Sbjct: 296 RRHRHRSPTHHPGLRPHP--PRRPPHCWETPR-LSHRHPP 332
>ref|NP_250283.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa]
pir||E83446 hypothetical protein PA1592 [imported] - Pseudomonas aeruginosa
(strain PAO1)
gb|AAG04981.1|AE004587_5 (AE004587) hypothetical protein [Pseudomonas aeruginosa]
Length = 78
Score = 30.0 bits (66), Expect = 5.4
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 1 ERRSSAATRDSPATTMANS*PYSQRPSPNAPVPDSDRMSRSKTTLSTP 144
+ AA +PAT S P + P+AP P SD + +T TP
Sbjct: 23 KEEDKAAAPAAPATETQPSAPATPPAEPSAPAPSSDTPATPQTPAPTP 70
>gb|AAD56218.2| (AF177533) tight junction protein ZO-2 isoform A [Homo sapiens]
Length = 1043
Score = 29.6 bits (65), Expect = 7.0
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 50 RIHDPIRKDRRRTHPSRTATGCR-GARLHFPRLRTY*GRLRHHHLRPPVPCPRGSPG 217
R +DP D R + G R AR PR R+ H H R P P PRG PG
Sbjct: 255 RAYDP---DYERAYSPEYRRGARHDARSRGPRSRSR----EHPHSRSPSPEPRGRPG 304
>gb|AAC02527.2| (AF177533) tight junction protein ZO-2 isoform C [Homo sapiens]
Length = 1167
Score = 29.6 bits (65), Expect = 7.0
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 50 RIHDPIRKDRRRTHPSRTATGCR-GARLHFPRLRTY*GRLRHHHLRPPVPCPRGSPG 217
R +DP D R + G R AR PR R+ H H R P P PRG PG
Sbjct: 232 RAYDP---DYERAYSPEYRRGARHDARSRGPRSRSR----EHPHSRSPSPEPRGRPG 281
>gb|AAD56219.2| (AF177533) tight junction protein ZO-2 isoform C [Homo sapiens]
Length = 1020
Score = 29.6 bits (65), Expect = 7.0
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 50 RIHDPIRKDRRRTHPSRTATGCR-GARLHFPRLRTY*GRLRHHHLRPPVPCPRGSPG 217
R +DP D R + G R AR PR R+ H H R P P PRG PG
Sbjct: 232 RAYDP---DYERAYSPEYRRGARHDARSRGPRSRSR----EHPHSRSPSPEPRGRPG 281
>ref|NP_004808.1| (NM_004817) tight junction protein 2 (zona occludens 2); Friedreich
ataxia region gene X104 (tight junction protein ZO-2)
[Homo sapiens]
pir||I54378 gene X104 protein - human
gb|AAA61300.1| (L27476) X104 [Homo sapiens]
Length = 1116
Score = 29.6 bits (65), Expect = 7.0
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 50 RIHDPIRKDRRRTHPSRTATGCR-GARLHFPRLRTY*GRLRHHHLRPPVPCPRGSPG 217
R +DP D R + G R AR PR R+ H H R P P PRG PG
Sbjct: 255 RAYDP---DYERAYSPEYRRGARHDARSRGPRSRSR----EHPHSRSPSPEPRGRPG 304
>ref|XP_005446.3| (XM_005446) tight junction protein 2 (zona occludens 2) [Homo
sapiens]
Length = 1190
Score = 29.6 bits (65), Expect = 7.0
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 50 RIHDPIRKDRRRTHPSRTATGCR-GARLHFPRLRTY*GRLRHHHLRPPVPCPRGSPG 217
R +DP D R + G R AR PR R+ H H R P P PRG PG
Sbjct: 255 RAYDP---DYERAYSPEYRRGARHDARSRGPRSRSR----EHPHSRSPSPEPRGRPG 304
>sp|Q9UDY2|ZO2_HUMAN TIGHT JUNCTION PROTEIN ZO-2 (ZONULA OCCLUDENS 2 PROTEIN) (ZONA
OCCLUDENS 2 PROTEIN) (TIGHT JUNCTION PROTEIN 2)
gb|AAD20387.2| (AF177533) tight junction protein ZO-2 isoform A [Homo sapiens]
Length = 1190
Score = 29.6 bits (65), Expect = 7.0
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 50 RIHDPIRKDRRRTHPSRTATGCR-GARLHFPRLRTY*GRLRHHHLRPPVPCPRGSPG 217
R +DP D R + G R AR PR R+ H H R P P PRG PG
Sbjct: 255 RAYDP---DYERAYSPEYRRGARHDARSRGPRSRSR----EHPHSRSPSPEPRGRPG 304
>emb|CAC32257.1| (AL583932) hypothetical protein L5213.09 [Leishmania major]
Length = 761
Score = 26.2 bits (56), Expect(2) = 7.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 185 PPVPCPRGSPGCQQG*RQVSLQEPPLQL 268
PP P PRGS G + + S P++L
Sbjct: 530 PPPPAPRGSSGALRASAEASTAPSPMRL 557
Score = 21.9 bits (45), Expect(2) = 7.3
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 10/57 (17%)
Frame = +1
Query: 10 SSAATRDSPATTMANS*PYSQRPS------PNAP---VPDSDRMSRSKTTL-STPTD 150
S AA SP+ M P S +PS P+ P +P +R S ++ T S P D
Sbjct: 454 SGAAAAVSPSFPMTGEVPPSAQPSARARVLPSVPLRMLPLDERSSAARATAESAPED 510
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: Mar 29, 2002 2:16 AM
Number of letters in database: 284,333,007
Number of sequences in database: 907,641
Lambda K H
0.313 0.123 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,011,290
Number of Sequences: 907641
Number of extensions: 2438888
Number of successful extensions: 6756
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 6440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6736
length of database: 284,333,007
effective HSP length: 69
effective length of database: 221,705,778
effective search space used: 5320938672
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)