BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNT3/stackpack/blast_Mgr-N/FgrNT3_0_G19.seq
(283 letters)
Database: /phillip/Ncr/MgrN_SP
1206 sequences; 496,015 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CL138CT149CN154 cl138ct149cn154 COVERAGE:0.96; CRAWID: 1; TOTAL_... 32 0.026
MGNS011CB04F.B mgns011cB04f.b LENGTH:547bp ; DIRECTION:0 ; CLONE... 30 0.10
MGNS008CH12F.B mgns008cH12f.b LENGTH:374bp ; DIRECTION:0 ; CLONE... 30 0.10
MGNS007BG01F.B mgns007bG01f.b LENGTH:442bp ; DIRECTION:0 ; CLONE... 30 0.10
MGNS013DH02F.B mgns013dH02f.b LENGTH:303bp ; DIRECTION:0 ; CLONE... 26 1.6
MGNS010BD02F.B mgns010bD02f.b LENGTH:495bp ; DIRECTION:0 ; CLONE... 26 1.6
MGNS007DD02F.B mgns007dD02f.b LENGTH:461bp ; DIRECTION:0 ; CLONE... 26 1.6
MGNS002BA02F.B mgns002bA02f.b LENGTH:355bp ; DIRECTION:0 ; CLONE... 26 1.6
CL117CT128CN133 cl117ct128cn133 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 1.6
MGNS013DC04F.B mgns013dC04f.b LENGTH:469bp ; DIRECTION:0 ; CLONE... 24 6.4
MGNS012CE05F.B mgns012cE05f.b LENGTH:214bp ; DIRECTION:0 ; CLONE... 24 6.4
MGNS012CE01F.B mgns012cE01f.b LENGTH:380bp ; DIRECTION:0 ; CLONE... 24 6.4
MGNS012AA03F.B mgns012aA03f.b LENGTH:343bp ; DIRECTION:0 ; CLONE... 24 6.4
MGNS011AE03F.B mgns011aE03f.b LENGTH:273bp ; DIRECTION:0 ; CLONE... 24 6.4
MGNS011AC09F.B mgns011aC09f.b LENGTH:426bp ; DIRECTION:0 ; CLONE... 24 6.4
MGNS010BH11F.B mgns010bH11f.b LENGTH:412bp ; DIRECTION:0 ; CLONE... 24 6.4
MGNS010BD12F.B mgns010bD12f.b LENGTH:555bp ; DIRECTION:0 ; CLONE... 24 6.4
MGNS008AC09F.B mgns008aC09f.b LENGTH:453bp ; DIRECTION:0 ; CLONE... 24 6.4
MGNS007CE10F.B mgns007cE10f.b LENGTH:516bp ; DIRECTION:0 ; CLONE... 24 6.4
MGNS007CC08F.B mgns007cC08f.b LENGTH:463bp ; DIRECTION:0 ; CLONE... 24 6.4
MGNS001CC12F.B mgns001cC12f.b LENGTH:362bp ; DIRECTION:0 ; CLONE... 24 6.4
MGNS001AH07F.B mgns001aH07f.b LENGTH:589bp ; DIRECTION:0 ; CLONE... 24 6.4
CL96CT107CN111 cl96ct107cn111 COVERAGE:0.98; CRAWID: 1; TOTAL_ES... 24 6.4
CL266CT278CN284 cl266ct278cn284 COVERAGE:0.99; CRAWID: 1; TOTAL_... 24 6.4
CL255CT267CN273 cl255ct267cn273 COVERAGE:0.98; CRAWID: 1; TOTAL_... 24 6.4
CL230CT241CN247 cl230ct241cn247 COVERAGE:0.99; CRAWID: 1; TOTAL_... 24 6.4
CL197CT208CN214 cl197ct208cn214 COVERAGE:0.99; CRAWID: 1; TOTAL_... 24 6.4
CL180CT191CN197 cl180ct191cn197 COVERAGE:0.99; CRAWID: 1; TOTAL_... 24 6.4
CL132CT143CN148 cl132ct143cn148 COVERAGE:0.97; CRAWID: 1; TOTAL_... 24 6.4
>CL138CT149CN154 cl138ct149cn154 COVERAGE:0.96; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns002cC09f.b,mgns
Length = 376
Score = 32.2 bits (16), Expect = 0.026
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 166 gcggcatcatcatctccgac 185
|||||||||||||| |||||
Sbjct: 340 gcggcatcatcatcaccgac 359
>MGNS011CB04F.B mgns011cB04f.b LENGTH:547bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 547
Score = 30.2 bits (15), Expect = 0.10
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 116 cgaggagcaagacta 130
|||||||||||||||
Sbjct: 81 cgaggagcaagacta 95
>MGNS008CH12F.B mgns008cH12f.b LENGTH:374bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 374
Score = 30.2 bits (15), Expect = 0.10
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 142 cctacggacgtactg 156
|||||||||||||||
Sbjct: 299 cctacggacgtactg 313
>MGNS007BG01F.B mgns007bG01f.b LENGTH:442bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 442
Score = 30.2 bits (15), Expect = 0.10
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 27 cgattcacccgcaac 41
|||||||||||||||
Sbjct: 217 cgattcacccgcaac 231
>MGNS013DH02F.B mgns013dH02f.b LENGTH:303bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 303
Score = 26.3 bits (13), Expect = 1.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 109 aggatgtcgagga 121
|||||||||||||
Sbjct: 229 aggatgtcgagga 217
>MGNS010BD02F.B mgns010bD02f.b LENGTH:495bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 495
Score = 26.3 bits (13), Expect = 1.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 79 tcgccgaacgcac 91
|||||||||||||
Sbjct: 117 tcgccgaacgcac 105
>MGNS007DD02F.B mgns007dD02f.b LENGTH:461bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 461
Score = 26.3 bits (13), Expect = 1.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 112 atgtcgaggagca 124
|||||||||||||
Sbjct: 458 atgtcgaggagca 446
>MGNS002BA02F.B mgns002bA02f.b LENGTH:355bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 355
Score = 26.3 bits (13), Expect = 1.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 240 tttctctccaaga 252
|||||||||||||
Sbjct: 276 tttctctccaaga 288
>CL117CT128CN133 cl117ct128cn133 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns002aG08f.b,mgns
Length = 593
Score = 26.3 bits (13), Expect = 1.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 3 gagaaggagctca 15
|||||||||||||
Sbjct: 241 gagaaggagctca 253
>MGNS013DC04F.B mgns013dC04f.b LENGTH:469bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 469
Score = 24.3 bits (12), Expect = 6.4
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 166 gcggcatcatca 177
||||||||||||
Sbjct: 352 gcggcatcatca 341
>MGNS012CE05F.B mgns012cE05f.b LENGTH:214bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 214
Score = 24.3 bits (12), Expect = 6.4
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 107 acaggatgtcga 118
||||||||||||
Sbjct: 147 acaggatgtcga 136
>MGNS012CE01F.B mgns012cE01f.b LENGTH:380bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 380
Score = 24.3 bits (12), Expect = 6.4
Identities = 15/16 (93%)
Strand = Plus / Minus
Query: 252 aacccccgctccagct 267
||||||||||| ||||
Sbjct: 37 aacccccgctcaagct 22
>MGNS012AA03F.B mgns012aA03f.b LENGTH:343bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 343
Score = 24.3 bits (12), Expect = 6.4
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 98 cggacagcgaca 109
||||||||||||
Sbjct: 14 cggacagcgaca 3
>MGNS011AE03F.B mgns011aE03f.b LENGTH:273bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 273
Score = 24.3 bits (12), Expect = 6.4
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 258 cgctccagctgg 269
||||||||||||
Sbjct: 216 cgctccagctgg 205
>MGNS011AC09F.B mgns011aC09f.b LENGTH:426bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 426
Score = 24.3 bits (12), Expect = 6.4
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 191 gtaccctgccct 202
||||||||||||
Sbjct: 313 gtaccctgccct 324
>MGNS010BH11F.B mgns010bH11f.b LENGTH:412bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 412
Score = 24.3 bits (12), Expect = 6.4
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 224 caaggttgacga 235
||||||||||||
Sbjct: 396 caaggttgacga 385
>MGNS010BD12F.B mgns010bD12f.b LENGTH:555bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 555
Score = 24.3 bits (12), Expect = 6.4
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 12 ctcagcagctac 23
||||||||||||
Sbjct: 188 ctcagcagctac 199
>MGNS008AC09F.B mgns008aC09f.b LENGTH:453bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 453
Score = 24.3 bits (12), Expect = 6.4
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 165 tgcggcatcatc 176
||||||||||||
Sbjct: 172 tgcggcatcatc 161
>MGNS007CE10F.B mgns007cE10f.b LENGTH:516bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 516
Score = 24.3 bits (12), Expect = 6.4
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 157 agggcgtctgcg 168
||||||||||||
Sbjct: 364 agggcgtctgcg 375
>MGNS007CC08F.B mgns007cC08f.b LENGTH:463bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 463
Score = 24.3 bits (12), Expect = 6.4
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 244 tctccaagaacc 255
||||||||||||
Sbjct: 383 tctccaagaacc 372
>MGNS001CC12F.B mgns001cC12f.b LENGTH:362bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 362
Score = 24.3 bits (12), Expect = 6.4
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 33 acccgcaacaac 44
||||||||||||
Sbjct: 65 acccgcaacaac 76
>MGNS001AH07F.B mgns001aH07f.b LENGTH:589bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 589
Score = 24.3 bits (12), Expect = 6.4
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 1 gagagaaggagc 12
||||||||||||
Sbjct: 559 gagagaaggagc 570
>CL96CT107CN111 cl96ct107cn111 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:7; ESTS:mgns001dF06f.b,mgns0
Length = 537
Score = 24.3 bits (12), Expect = 6.4
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 224 caaggttgacga 235
||||||||||||
Sbjct: 169 caaggttgacga 180
>CL266CT278CN284 cl266ct278cn284 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns011aB03f.b,mgns
Length = 431
Score = 24.3 bits (12), Expect = 6.4
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 171 atcatcatctcc 182
||||||||||||
Sbjct: 82 atcatcatctcc 71
>CL255CT267CN273 cl255ct267cn273 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns009dC02f.b,mgns
Length = 341
Score = 24.3 bits (12), Expect = 6.4
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 116 cgaggagcaaga 127
||||||||||||
Sbjct: 52 cgaggagcaaga 41
>CL230CT241CN247 cl230ct241cn247 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns008bD11f.b,mgns
Length = 495
Score = 24.3 bits (12), Expect = 6.4
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 105 cgacaggatgtc 116
||||||||||||
Sbjct: 471 cgacaggatgtc 460
>CL197CT208CN214 cl197ct208cn214 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns007bB06f.b,mgns
Length = 835
Score = 24.3 bits (12), Expect = 6.4
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 4 agaaggagctca 15
||||||||||||
Sbjct: 295 agaaggagctca 306
>CL180CT191CN197 cl180ct191cn197 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns006aH07f.b,mgns
Length = 553
Score = 24.3 bits (12), Expect = 6.4
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 172 tcatcatctccg 183
||||||||||||
Sbjct: 511 tcatcatctccg 522
>CL132CT143CN148 cl132ct143cn148 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns002bG07f.b,mgns
Length = 463
Score = 24.3 bits (12), Expect = 6.4
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 126 gactacactttc 137
||||||||||||
Sbjct: 426 gactacactttc 437
Database: /phillip/Ncr/MgrN_SP
Posted date: Feb 18, 2002 5:07 PM
Number of letters in database: 496,015
Number of sequences in database: 1206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 103
Number of Sequences: 1206
Number of extensions: 103
Number of successful extensions: 29
Number of sequences better than 10.0: 29
length of query: 283
length of database: 496,015
effective HSP length: 13
effective length of query: 270
effective length of database: 480,337
effective search space: 129690990
effective search space used: 129690990
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 12 (24.3 bits)