The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FgrNT3_0_M11.seq Fgr_0_M11 LENGTH:548bp ; DIRECTION:5 ;
CLONE:Fgr_0_M11 ; CLONELIB: n/a ; TISSUE:
(548 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
907,641 sequences; 284,333,007 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB11598.1| (AB006702) selenium-binding protein-like [A... 33 1.5
ref|NP_198857.1| (NM_123405) putative protein [Arabidopsis ... 33 1.5
ref|XP_004710.3| (XM_004710) similar to smoothened homolog ... 32 3.3
dbj|BAB41083.1| (AB057755) synaptotagmin-like protein 2-b [... 32 4.4
dbj|BAB41090.1| (AB057762) synaptotagmin-like protein 2-a d... 32 4.4
dbj|BAB41088.1| (AB057760) synaptotagmin-like protein 2-a d... 32 4.4
dbj|BAB32652.1| (AB050742) synaptotagmin-like protein 2 [Mu... 32 4.4
ref|NP_113571.1| (NM_031394) synaptotagmin-like 2 [Mus musc... 32 4.4
dbj|BAB41085.1| (AB057757) synaptotagmin-like protein 2-d [... 32 4.4
dbj|BAB41089.1| (AB057761) synaptotagmin-like protein 2-a d... 32 4.4
ref|NP_276652.1| (NC_000916) anaerobic ribonucleoside-triph... 31 5.7
ref|XP_062068.1| (XM_062068) hypothetical protein XP_062068... 31 7.4
gb|AAK15486.1|AF323694_1 (AF323694) BioA [Pseudomonas fluor... 31 7.4
ref|NP_585822.1| (NC_003233) hypothetical protein [Encephal... 31 7.4
dbj|BAB62047.1| (D85415) ORF1~unknown product [Pseudomonas ... 31 7.4
ref|NP_248990.1| (NC_002516) probable aminotransferase [Pse... 30 9.7
gb|AAG17128.1|AF190463_1 (AF190463) hypothetical CdoX1 [Com... 30 9.7
>dbj|BAB11598.1| (AB006702) selenium-binding protein-like [Arabidopsis thaliana]
gb|AAL32717.1| (AY062639) selenium-binding protein-like [Arabidopsis thaliana]
Length = 608
Score = 33.1 bits (74), Expect = 1.5
Identities = 24/62 (38%), Positives = 33/62 (52%), Gaps = 7/62 (11%)
Frame = +1
Query: 79 SNSGEWSYSGRMRNLLRQTGLVRAWQSSSWGAEDRSQL------QW-HPQSSGILRKRLE 237
S SG W + R+RNL++Q GLVRA S E +++ W HP+S I +K E
Sbjct: 449 SASGLWKDASRIRNLMKQKGLVRA--SGCSYIEHGNKIHKFVVGDWSHPESEKIQKKLKE 506
Query: 238 TR 243
R
Sbjct: 507 IR 508
>ref|NP_198857.1| (NM_123405) putative protein [Arabidopsis thaliana]
Length = 1155
Score = 33.1 bits (74), Expect = 1.5
Identities = 24/62 (38%), Positives = 33/62 (52%), Gaps = 7/62 (11%)
Frame = +1
Query: 79 SNSGEWSYSGRMRNLLRQTGLVRAWQSSSWGAEDRSQL------QW-HPQSSGILRKRLE 237
S SG W + R+RNL++Q GLVRA S E +++ W HP+S I +K E
Sbjct: 996 SASGLWKDASRIRNLMKQKGLVRA--SGCSYIEHGNKIHKFVVGDWSHPESEKIQKKLKE 1053
Query: 238 TR 243
R
Sbjct: 1054 IR 1055
>ref|XP_004710.3| (XM_004710) similar to smoothened homolog (Drosophila) (H. sapiens)
[Homo sapiens]
Length = 104
Score = 32.0 bits (71), Expect = 3.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 354 PSGYHGTQVSGTSRAGFWPVSQRGSISVPHLPGKH 458
PSG Q +G G WP + G+ S+PH P H
Sbjct: 33 PSGSISAQCTGPRGMGSWPPTGPGAYSLPHQPDGH 67
>dbj|BAB41083.1| (AB057755) synaptotagmin-like protein 2-b [Mus musculus]
Length = 1142
Score = 31.6 bits (70), Expect = 4.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 166 WGAEDRSQLQWHPQSSGILRKRLETRHLGDLQLLVQY 276
W ++ QL+W+P LET + G+++L +QY
Sbjct: 950 WDSKQNKQLKWYPLKRKTAPVALETENRGEMKLALQY 986
>dbj|BAB41090.1| (AB057762) synaptotagmin-like protein 2-a delta 2S-III [Mus
musculus]
Length = 910
Score = 31.6 bits (70), Expect = 4.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 166 WGAEDRSQLQWHPQSSGILRKRLETRHLGDLQLLVQY 276
W ++ QL+W+P LET + G+++L +QY
Sbjct: 718 WDSKQNKQLKWYPLKRKTAPVALETENRGEMKLALQY 754
>dbj|BAB41088.1| (AB057760) synaptotagmin-like protein 2-a delta 2S-I [Mus musculus]
Length = 923
Score = 31.6 bits (70), Expect = 4.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 166 WGAEDRSQLQWHPQSSGILRKRLETRHLGDLQLLVQY 276
W ++ QL+W+P LET + G+++L +QY
Sbjct: 731 WDSKQNKQLKWYPLKRKTAPVALETENRGEMKLALQY 767
>dbj|BAB32652.1| (AB050742) synaptotagmin-like protein 2 [Mus musculus]
dbj|BAB41084.1| (AB057756) synaptotagmin-like protein 2-c [Mus musculus]
Length = 376
Score = 31.6 bits (70), Expect = 4.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 166 WGAEDRSQLQWHPQSSGILRKRLETRHLGDLQLLVQY 276
W ++ QL+W+P LET + G+++L +QY
Sbjct: 184 WDSKQNKQLKWYPLKRKTAPVALETENRGEMKLALQY 220
>ref|NP_113571.1| (NM_031394) synaptotagmin-like 2 [Mus musculus]
dbj|BAB41082.1| (AB057754) synaptotagmin-like protein 2-a [Mus musculus]
Length = 950
Score = 31.6 bits (70), Expect = 4.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 166 WGAEDRSQLQWHPQSSGILRKRLETRHLGDLQLLVQY 276
W ++ QL+W+P LET + G+++L +QY
Sbjct: 758 WDSKQNKQLKWYPLKRKTAPVALETENRGEMKLALQY 794
>dbj|BAB41085.1| (AB057757) synaptotagmin-like protein 2-d [Mus musculus]
dbj|BAB41091.1| (AB057763) synaptotagmin-like protein 2-d delta 2S-IV [Mus
musculus]
Length = 255
Score = 31.6 bits (70), Expect = 4.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 166 WGAEDRSQLQWHPQSSGILRKRLETRHLGDLQLLVQY 276
W ++ QL+W+P LET + G+++L +QY
Sbjct: 63 WDSKQNKQLKWYPLKRKTAPVALETENRGEMKLALQY 99
>dbj|BAB41089.1| (AB057761) synaptotagmin-like protein 2-a delta 2S-II [Mus
musculus]
Length = 934
Score = 31.6 bits (70), Expect = 4.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 166 WGAEDRSQLQWHPQSSGILRKRLETRHLGDLQLLVQY 276
W ++ QL+W+P LET + G+++L +QY
Sbjct: 742 WDSKQNKQLKWYPLKRKTAPVALETENRGEMKLALQY 778
>ref|NP_276652.1| (NC_000916) anaerobic ribonucleoside-triphosphate reductase
[Methanothermobacter thermautotrophicus]
pir||C69072 anaerobic ribonucleoside-triphosphate reductase - Methanobacterium
thermoautotrophicum (strain Delta H)
gb|AAB86013.1| (AE000914) anaerobic ribonucleoside-triphosphate reductase
[Methanothermobacter thermautotrophicus]
Length = 776
Score = 31.2 bits (69), Expect = 5.7
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +1
Query: 79 SNSGEWSYSGRMRNLLRQTGLVRAWQSSSWGAEDRSQLQWHPQSSGILRK 228
S+ G W+YS + LR L+R Q S +R +++W+ + +G +++
Sbjct: 700 SDIGFWAYSNALSFCLRCKTLMRGLQDSCARCGERDEVEWYDRITGYVQQ 749
>ref|XP_062068.1| (XM_062068) hypothetical protein XP_062068 [Homo sapiens]
Length = 116
Score = 30.8 bits (68), Expect = 7.4
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 428 NLSPASPGETQRTTPIGQHTWPHNV*HIQPDPVPSVL 538
+L +P + R +PI QH + +N H P PVPSVL
Sbjct: 64 SLPGLTPAQRTRFSPIRQHVYENNCVH-SPCPVPSVL 99
>gb|AAK15486.1|AF323694_1 (AF323694) BioA [Pseudomonas fluorescens]
Length = 453
Score = 30.8 bits (68), Expect = 7.4
Identities = 14/38 (36%), Positives = 23/38 (59%)
Frame = +3
Query: 357 SGYHGTQVSGTSRAGFWPVSQRGSISVPHLPGKHNAQP 470
+GYHG+ V+G S G + ++G + +P + H AQP
Sbjct: 152 NGYHGSTVAGASLGGMTYMHEQGDLPIPGI--VHIAQP 187
>ref|NP_585822.1| (NC_003233) hypothetical protein [Encephalitozoon cuniculi]
emb|CAD25426.1| (AL590446) hypothetical protein [Encephalitozoon cuniculi]
Length = 738
Score = 30.8 bits (68), Expect = 7.4
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -1
Query: 272 WTRSCKSPKCLVSRRFRRMPLD*GCHCSWLLSSAPQDELCQARTRPVCRS 123
WT +C C+VS +RR P G L + +C+ +P+ RS
Sbjct: 409 WTGTCLGESCVVSAYYRRSP---GTFVFTLQRDGCGERICRGDAKPIVRS 455
>dbj|BAB62047.1| (D85415) ORF1~unknown product [Pseudomonas putida]
Length = 386
Score = 30.8 bits (68), Expect = 7.4
Identities = 17/38 (44%), Positives = 20/38 (51%)
Frame = +3
Query: 342 LGPMPSGYHGTQVSGTSRAGFWPVSQRGSISVPHLPGK 455
LGP+ G+HG Q + AG W S S S P PGK
Sbjct: 127 LGPLVLGWHGQQWDAVAAAGVWLDS--ASTSHPASPGK 162
>ref|NP_248990.1| (NC_002516) probable aminotransferase [Pseudomonas aeruginosa]
pir||E83609 probable aminotransferase PA0299 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG03688.1|AE004467_10 (AE004467) probable aminotransferase [Pseudomonas aeruginosa]
Length = 456
Score = 30.4 bits (67), Expect = 9.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 357 SGYHGTQVSGTSRAGFWPVSQRGSISVPHLPGKHNAQP 470
+GYHG+ V+G S G + ++G +P + H AQP
Sbjct: 154 NGYHGSTVAGVSLGGMKALHEQGDFPIPGI--VHIAQP 189
>gb|AAG17128.1|AF190463_1 (AF190463) hypothetical CdoX1 [Comamonas sp. JS765]
Length = 188
Score = 30.4 bits (67), Expect = 9.7
Identities = 17/38 (44%), Positives = 20/38 (51%)
Frame = +3
Query: 342 LGPMPSGYHGTQVSGTSRAGFWPVSQRGSISVPHLPGK 455
LGP+ G+HG Q + AG W S S S P PGK
Sbjct: 127 LGPLLLGWHGQQWDAVAAAGVWLDS--ASTSHPASPGK 162
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: Mar 29, 2002 2:16 AM
Number of letters in database: 284,333,007
Number of sequences in database: 907,641
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 316,975,722
Number of Sequences: 907641
Number of extensions: 6834169
Number of successful extensions: 17539
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 16819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17535
length of database: 284,333,007
effective HSP length: 113
effective length of database: 181,769,574
effective search space used: 12542100606
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)