BLASTN 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/FgrNT3/stackpack/blast_Mgr-N/FgrNT3_0_M11.seq
         (548 letters)

Database: /phillip/Ncr/MgrN_SP
           1206 sequences; 496,015 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CL73CT82CN86 cl73ct82cn86 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:1...    30  0.20
MGNS001CG11F.B mgns001cG11f.b LENGTH:260bp ; DIRECTION:0 ; CLONE...    28  0.80
MGNS001CG06F.B mgns001cG06f.b LENGTH:386bp ; DIRECTION:0 ; CLONE...    28  0.80
MGNS011DG11F.B mgns011dG11f.b LENGTH:438bp ; DIRECTION:0 ; CLONE...    26  3.2
MGNS011CF04F.B mgns011cF04f.b LENGTH:511bp ; DIRECTION:0 ; CLONE...    26  3.2
MGNS011AA04F.B mgns011aA04f.b LENGTH:472bp ; DIRECTION:0 ; CLONE...    26  3.2
MGNS001AA12F.B mgns001aA12f.b LENGTH:508bp ; DIRECTION:0 ; CLONE...    26  3.2
CL60CT67CN70 cl60ct67cn70 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:2...    26  3.2
CL198CT209CN215 cl198ct209cn215 COVERAGE:0.99; CRAWID: 1; TOTAL_...    26  3.2
CL112CT123CN128 cl112ct123cn128 COVERAGE:0.99; CRAWID: 1; TOTAL_...    26  3.2

>CL73CT82CN86 cl73ct82cn86 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:11;
           ESTS:mgns001cE01f.b,mgns00
          Length = 756

 Score = 30.2 bits (15), Expect = 0.20
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 300 ttcatcaatcacaaa 314
           |||||||||||||||
Sbjct: 108 ttcatcaatcacaaa 122



>MGNS001CG11F.B mgns001cG11f.b LENGTH:260bp ; DIRECTION:0 ; CLONE:
           n/a ; CLONELIB: n/a ; TISSUE:
          Length = 260

 Score = 28.2 bits (14), Expect = 0.80
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 460 acgcacaaccccaa 473
           ||||||||||||||
Sbjct: 9   acgcacaaccccaa 22



>MGNS001CG06F.B mgns001cG06f.b LENGTH:386bp ; DIRECTION:0 ; CLONE:
           n/a ; CLONELIB: n/a ; TISSUE:
          Length = 386

 Score = 28.2 bits (14), Expect = 0.80
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 365 tcatgggacacaag 378
           ||||||||||||||
Sbjct: 64  tcatgggacacaag 77



>MGNS011DG11F.B mgns011dG11f.b LENGTH:438bp ; DIRECTION:0 ; CLONE:
           n/a ; CLONELIB: n/a ; TISSUE:
          Length = 438

 Score = 26.3 bits (13), Expect = 3.2
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                        
Query: 133 acaggccttgttc 145
           |||||||||||||
Sbjct: 354 acaggccttgttc 366



>MGNS011CF04F.B mgns011cF04f.b LENGTH:511bp ; DIRECTION:0 ; CLONE:
           n/a ; CLONELIB: n/a ; TISSUE:
          Length = 511

 Score = 26.3 bits (13), Expect = 3.2
 Identities = 16/17 (94%)
 Strand = Plus / Plus

                            
Query: 186 ccagctacaatggcatc 202
           ||||| |||||||||||
Sbjct: 197 ccagccacaatggcatc 213



>MGNS011AA04F.B mgns011aA04f.b LENGTH:472bp ; DIRECTION:0 ; CLONE:
           n/a ; CLONELIB: n/a ; TISSUE:
          Length = 472

 Score = 26.3 bits (13), Expect = 3.2
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                        
Query: 484 tacatggccacac 496
           |||||||||||||
Sbjct: 299 tacatggccacac 287



>MGNS001AA12F.B mgns001aA12f.b LENGTH:508bp ; DIRECTION:0 ; CLONE:
           n/a ; CLONELIB: n/a ; TISSUE:
          Length = 508

 Score = 26.3 bits (13), Expect = 3.2
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                        
Query: 368 tgggacacaagtc 380
           |||||||||||||
Sbjct: 306 tgggacacaagtc 294



>CL60CT67CN70 cl60ct67cn70 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:2;
           ESTS:mgns001bH04f.b,mgns009
          Length = 404

 Score = 26.3 bits (13), Expect = 3.2
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                        
Query: 81  caacagcggagag 93
           |||||||||||||
Sbjct: 263 caacagcggagag 275



>CL198CT209CN215 cl198ct209cn215 COVERAGE:0.99; CRAWID: 1;
           TOTAL_ESTS:3; ESTS:mgns007bC03f.b,mgns
          Length = 489

 Score = 26.3 bits (13), Expect = 3.2
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                        
Query: 259 caactccttgtcc 271
           |||||||||||||
Sbjct: 446 caactccttgtcc 434



>CL112CT123CN128 cl112ct123cn128 COVERAGE:0.99; CRAWID: 1;
           TOTAL_ESTS:3; ESTS:mgns002aE12f.b,mgns
          Length = 555

 Score = 26.3 bits (13), Expect = 3.2
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                        
Query: 427 caatctcagtccc 439
           |||||||||||||
Sbjct: 56  caatctcagtccc 68



  Database: /phillip/Ncr/MgrN_SP
    Posted date:  Feb 18, 2002  5:07 PM
  Number of letters in database: 496,015
  Number of sequences in database:  1206
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 134
Number of Sequences: 1206
Number of extensions: 134
Number of successful extensions: 30
Number of sequences better than 10.0: 10
length of query: 548
length of database: 496,015
effective HSP length: 14
effective length of query: 534
effective length of database: 479,131
effective search space: 255855954
effective search space used: 255855954
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)