BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNT3/stackpack/blast_Mgr-N/FgrNT3_0_M15.seq
(525 letters)
Database: /phillip/Ncr/MgrN_SP
1206 sequences; 496,015 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGNS002DH03F.B mgns002dH03f.b LENGTH:457bp ; DIRECTION:0 ; CLONE... 84 2e-17
MGNS013BD07F.B mgns013bD07f.b LENGTH:395bp ; DIRECTION:0 ; CLONE... 30 0.20
MGNS001BC08F.B mgns001bC08f.b LENGTH:495bp ; DIRECTION:0 ; CLONE... 30 0.20
CL17CT19CN19 cl17ct19cn19 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:3... 28 0.77
CL135CT146CN151 cl135ct146cn151 COVERAGE:0.98; CRAWID: 1; TOTAL_... 28 0.77
MGNS013CC12F.B mgns013cC12f.b LENGTH:472bp ; DIRECTION:0 ; CLONE... 26 3.1
MGNS013BB11F.B mgns013bB11f.b LENGTH:360bp ; DIRECTION:0 ; CLONE... 26 3.1
MGNS012CD02F.B mgns012cD02f.b LENGTH:452bp ; DIRECTION:0 ; CLONE... 26 3.1
MGNS011DF04F.B mgns011dF04f.b LENGTH:371bp ; DIRECTION:0 ; CLONE... 26 3.1
MGNS009AD02F.B mgns009aD02f.b LENGTH:337bp ; DIRECTION:0 ; CLONE... 26 3.1
MGNS004DD12F.B mgns004dD12f.b LENGTH:620bp ; DIRECTION:0 ; CLONE... 26 3.1
CL9CT10CN10 cl9ct10cn10 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:2; ... 26 3.1
CL94CT105CN109 cl94ct105cn109 COVERAGE:0.98; CRAWID: 1; TOTAL_ES... 26 3.1
CL55CT62CN65 cl55ct62cn65 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:2... 26 3.1
CL37CT43CN46 cl37ct43cn46 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:1... 26 3.1
CL174CT185CN191 cl174ct185cn191 COVERAGE:0.95; CRAWID: 1; TOTAL_... 26 3.1
CL112CT123CN128 cl112ct123cn128 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 3.1
>MGNS002DH03F.B mgns002dH03f.b LENGTH:457bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 457
Score = 83.8 bits (42), Expect = 2e-17
Identities = 111/134 (82%)
Strand = Plus / Plus
Query: 7 atcgtcgccgacaagaactgtgagaagcttcactacatttcccctcagatttggtgcgct 66
|||||||| ||||||||||| ||||||||||||||||| || |||||||| ||||| ||
Sbjct: 321 atcgtcgcagacaagaactgcgagaagcttcactacatctcgcctcagatctggtgtgcc 380
Query: 67 ggtgccggtacagctgccgataccgagttcaccaccgccctcatctcctcccagctcgaa 126
|| || |||||||| ||||| || || ||||| || ||| | ||||| || ||||| ||
Sbjct: 381 ggagctggtacagcagccgacacggaattcacaacagccattatctcgtctcagctggag 440
Query: 127 ctgcactccctatc 140
|| ||||| |||||
Sbjct: 441 ctacactctctatc 454
>MGNS013BD07F.B mgns013bD07f.b LENGTH:395bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 395
Score = 30.2 bits (15), Expect = 0.20
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 126 actgcactccctatc 140
|||||||||||||||
Sbjct: 375 actgcactccctatc 361
>MGNS001BC08F.B mgns001bC08f.b LENGTH:495bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 495
Score = 30.2 bits (15), Expect = 0.20
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 232 gttgctggtgtcgac 246
|||||||||||||||
Sbjct: 415 gttgctggtgtcgac 401
>CL17CT19CN19 cl17ct19cn19 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:3;
ESTS:mgns001cF09f.b,mgns010
Length = 617
Score = 28.2 bits (14), Expect = 0.77
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 4 cccatcgtcgccgacaag 21
|||||| |||||||||||
Sbjct: 597 cccatcatcgccgacaag 614
>CL135CT146CN151 cl135ct146cn151 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns002cA06f.b,mgns
Length = 562
Score = 28.2 bits (14), Expect = 0.77
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 60 gtgcgctggtgccg 73
||||||||||||||
Sbjct: 373 gtgcgctggtgccg 386
>MGNS013CC12F.B mgns013cC12f.b LENGTH:472bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 472
Score = 26.3 bits (13), Expect = 3.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 356 agtggaagcctga 368
|||||||||||||
Sbjct: 321 agtggaagcctga 333
>MGNS013BB11F.B mgns013bB11f.b LENGTH:360bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 360
Score = 26.3 bits (13), Expect = 3.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 449 acgtggacgtggc 461
|||||||||||||
Sbjct: 97 acgtggacgtggc 109
>MGNS012CD02F.B mgns012cD02f.b LENGTH:452bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 452
Score = 26.3 bits (13), Expect = 3.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 63 cgctggtgccggt 75
|||||||||||||
Sbjct: 348 cgctggtgccggt 336
>MGNS011DF04F.B mgns011dF04f.b LENGTH:371bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 371
Score = 26.3 bits (13), Expect = 3.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 147 ccgcaagccccgc 159
|||||||||||||
Sbjct: 324 ccgcaagccccgc 336
>MGNS009AD02F.B mgns009aD02f.b LENGTH:337bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 337
Score = 26.3 bits (13), Expect = 3.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 30 gaagcttcactac 42
|||||||||||||
Sbjct: 323 gaagcttcactac 311
>MGNS004DD12F.B mgns004dD12f.b LENGTH:620bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 620
Score = 26.3 bits (13), Expect = 3.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 468 caccaccgacaag 480
|||||||||||||
Sbjct: 293 caccaccgacaag 281
>CL9CT10CN10 cl9ct10cn10 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:2;
ESTS:mgns001aB02f.b,mgns007d
Length = 554
Score = 26.3 bits (13), Expect = 3.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 467 tcaccaccgacaa 479
|||||||||||||
Sbjct: 363 tcaccaccgacaa 375
>CL94CT105CN109 cl94ct105cn109 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:7; ESTS:mgns001dF01f.b,mgns0
Length = 514
Score = 26.3 bits (13), Expect = 3.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 397 gccagcgatgcca 409
|||||||||||||
Sbjct: 200 gccagcgatgcca 188
>CL55CT62CN65 cl55ct62cn65 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:24;
ESTS:mgns001bF08f.b,mgns00
Length = 875
Score = 26.3 bits (13), Expect = 3.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 382 gaggccatcaagt 394
|||||||||||||
Sbjct: 337 gaggccatcaagt 349
>CL37CT43CN46 cl37ct43cn46 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:11;
ESTS:mgns001bB01f.b,mgns00
Length = 986
Score = 26.3 bits (13), Expect = 3.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 468 caccaccgacaag 480
|||||||||||||
Sbjct: 400 caccaccgacaag 412
>CL174CT185CN191 cl174ct185cn191 COVERAGE:0.95; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgns004cD03f.b,mgns
Length = 527
Score = 26.3 bits (13), Expect = 3.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 116 cccagctcgaact 128
|||||||||||||
Sbjct: 416 cccagctcgaact 428
>CL112CT123CN128 cl112ct123cn128 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgns002aE12f.b,mgns
Length = 555
Score = 26.3 bits (13), Expect = 3.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 186 gcagcacctcttc 198
|||||||||||||
Sbjct: 12 gcagcacctcttc 24
Database: /phillip/Ncr/MgrN_SP
Posted date: Feb 18, 2002 5:07 PM
Number of letters in database: 496,015
Number of sequences in database: 1206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 167
Number of Sequences: 1206
Number of extensions: 167
Number of successful extensions: 46
Number of sequences better than 10.0: 17
length of query: 525
length of database: 496,015
effective HSP length: 13
effective length of query: 512
effective length of database: 480,337
effective search space: 245932544
effective search space used: 245932544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)