The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FgrNT3_0_M23.seq Fgr_0_M23 LENGTH:505bp ; DIRECTION:5 ;
CLONE:Fgr_0_M23 ; CLONELIB: n/a ; TISSUE:
(505 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
907,641 sequences; 284,333,007 total letters
Score E
Sequences producing significant alignments: (bits) Value
pir||T45025 mucin MUC5B, tracheobronchial [imported] - huma... 35 0.42
ref|NP_003369.2| (NM_003378) VGF nerve growth factor induci... 33 1.6
emb|CAA73210.1| (Y12661) neuro-endocrine specific protein V... 32 2.1
gb|AAK31375.1|AC084329_1 (AC084329) ppg3 [Leishmania major] 32 2.7
pir||T46707 proteophosphoglycan, membrane-associated [impor... 32 2.7
emb|CAB46679.1| (AJ243459) proteophosphoglycan [Leishmania ... 32 2.7
emb|CAC00862.1| (AL390935) probable proteophosphoglycan [Le... 32 2.7
dbj|BAB84509.1| (AP004194) contains EST C72771(E2215)~unkno... 32 3.6
ref|XP_092303.1| (XM_092303) hypothetical protein XP_092303... 32 3.6
ref|NP_189711.1| (NM_113991) hypothetical protein [Arabidop... 32 3.6
emb|CAB99178.1| (AL390189) conserved hypothetical protein [... 31 4.7
dbj|BAB55704.1| (AP003075) hypothetical protein [Oryza sati... 31 6.1
ref|XP_099228.1| (XM_099228) hypothetical protein XP_099228... 30 8.0
gb|AAD27577.1|AF114171_19 (AF114171) hypothetical protein [... 30 8.0
ref|NP_506013.1| (NM_073612) adducin [Caenorhabditis elegan... 30 8.0
ref|NP_349868.1| (NC_003030) Possible surface protein, resp... 30 8.0
dbj|BAA88546.1| (AP000969) Similar to hypothetical protein ... 30 8.0
>pir||T45025 mucin MUC5B, tracheobronchial [imported] - human (fragment)
emb|CAA96577.1| (Z72496) mucin MUC5B [Homo sapiens]
Length = 3570
Score = 34.7 bits (78), Expect = 0.42
Identities = 21/64 (32%), Positives = 34/64 (52%)
Frame = +1
Query: 7 SSGFNQTNKATTISIKPK*F*LSQCLPSFRVSSAPPSPFDLSPRLSEASAPRASSAIPNL 186
S+G + T ATT + +P LS PS R + +PPSP +P + ++ ++A P+
Sbjct: 2133 STGTSHTPAATTGTTQPSTPALSSPHPSSRTTESPPSPGTTTPGHTRGTSRTTATATPSK 2192
Query: 187 TNRS 198
T S
Sbjct: 2193 TRTS 2196
>ref|NP_003369.2| (NM_003378) VGF nerve growth factor inducible precursor;
neuro-endocrine specific protein VGF [Homo sapiens]
gb|AAD45830.1|AC004876_3 (AC004876) similar to neuro-endocrine specific protein VGF; similar
to CAA73210 (PID:g2244659) [Homo sapiens]
Length = 615
Score = 32.7 bits (73), Expect = 1.6
Identities = 21/78 (26%), Positives = 32/78 (40%), Gaps = 3/78 (3%)
Frame = -3
Query: 311 RGIKGRGFASSVEPEESGTDEDSASAEKXXXXXXXXXXXXXXRFGIA---EDARGAEASL 141
RG+ GRG + E ES +E+ A E+ A E R + +L
Sbjct: 344 RGLGGRGLQEAAEERESAREEEEAEQERRGGEERVGEEDEEAAEAEAEAEEAERARQNAL 403
Query: 140 SRGERSKGDGGADDTRNE 87
E G+ GA+D R++
Sbjct: 404 LFAEEEDGEAGAEDKRSQ 421
>emb|CAA73210.1| (Y12661) neuro-endocrine specific protein VGF [Homo sapiens]
Length = 616
Score = 32.3 bits (72), Expect = 2.1
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Frame = -3
Query: 311 RGIKGRGFASSVEPEESGTDEDSASAEKXXXXXXXXXXXXXXRFGIAEDA----RGAEAS 144
RG+ GRG + E ES +E+ A E+ +A R + +
Sbjct: 344 RGLGGRGLQEAAEERESAREEEEAEQERRGGEERVGEEDEEAAEAAEAEADEAERARQNA 403
Query: 143 LSRGERSKGDGGADDTRNE 87
L E G+ GA+D R++
Sbjct: 404 LLFAEEEDGEAGAEDKRSQ 422
>gb|AAK31375.1|AC084329_1 (AC084329) ppg3 [Leishmania major]
Length = 1325
Score = 32.0 bits (71), Expect = 2.7
Identities = 17/42 (40%), Positives = 24/42 (56%)
Frame = +1
Query: 73 SQCLPSFRVSSAPPSPFDLSPRLSEASAPRASSAIPNLTNRS 198
S PS SSAP S +P S +SAP +SS+ P+ ++ S
Sbjct: 788 SSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSS 829
Score = 32.0 bits (71), Expect = 2.7
Identities = 17/42 (40%), Positives = 24/42 (56%)
Frame = +1
Query: 73 SQCLPSFRVSSAPPSPFDLSPRLSEASAPRASSAIPNLTNRS 198
S PS SSAP S +P S +SAP +SS+ P+ ++ S
Sbjct: 927 SSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSS 968
Score = 32.0 bits (71), Expect = 2.7
Identities = 17/42 (40%), Positives = 24/42 (56%)
Frame = +1
Query: 73 SQCLPSFRVSSAPPSPFDLSPRLSEASAPRASSAIPNLTNRS 198
S PS SSAP S +P S +SAP +SS+ P+ ++ S
Sbjct: 973 SSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSS 1014
Score = 32.0 bits (71), Expect = 2.7
Identities = 17/42 (40%), Positives = 24/42 (56%)
Frame = +1
Query: 73 SQCLPSFRVSSAPPSPFDLSPRLSEASAPRASSAIPNLTNRS 198
S PS SSAP S +P S +SAP +SS+ P+ ++ S
Sbjct: 1049 SSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSS 1090
Score = 32.0 bits (71), Expect = 2.7
Identities = 17/42 (40%), Positives = 24/42 (56%)
Frame = +1
Query: 73 SQCLPSFRVSSAPPSPFDLSPRLSEASAPRASSAIPNLTNRS 198
S PS SSAP S +P S +SAP +SS+ P+ ++ S
Sbjct: 757 SSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSS 798
>pir||T46707 proteophosphoglycan, membrane-associated [imported] - Leishmania
major (fragment)
emb|CAB46680.1| (AJ243460) proteophosphoglycan [Leishmania major]
Length = 383
Score = 32.0 bits (71), Expect = 2.7
Identities = 17/42 (40%), Positives = 24/42 (56%)
Frame = +1
Query: 73 SQCLPSFRVSSAPPSPFDLSPRLSEASAPRASSAIPNLTNRS 198
S PS SSAP S +P S +SAP +SS+ P+ ++ S
Sbjct: 161 SSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSS 202
Score = 32.0 bits (71), Expect = 2.7
Identities = 17/42 (40%), Positives = 24/42 (56%)
Frame = +1
Query: 73 SQCLPSFRVSSAPPSPFDLSPRLSEASAPRASSAIPNLTNRS 198
S PS SSAP S +P S +SAP +SS+ P+ ++ S
Sbjct: 53 SSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSS 94
Score = 30.4 bits (67), Expect = 8.0
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 73 SQCLPSFRVSSAPPSPFDLSPRLSEASAPRASSAIPN 183
S PS SSAP S +P S +SAP +SS+ P+
Sbjct: 192 SSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPS 228
>emb|CAB46679.1| (AJ243459) proteophosphoglycan [Leishmania major]
Length = 873
Score = 32.0 bits (71), Expect = 2.7
Identities = 17/42 (40%), Positives = 24/42 (56%)
Frame = +1
Query: 73 SQCLPSFRVSSAPPSPFDLSPRLSEASAPRASSAIPNLTNRS 198
S PS SSAP S +P S +SAP +SS+ P+ ++ S
Sbjct: 728 SSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSS 769
Score = 32.0 bits (71), Expect = 2.7
Identities = 17/42 (40%), Positives = 24/42 (56%)
Frame = +1
Query: 73 SQCLPSFRVSSAPPSPFDLSPRLSEASAPRASSAIPNLTNRS 198
S PS SSAP S +P S +SAP +SS+ P+ ++ S
Sbjct: 666 SSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSS 707
>emb|CAC00862.1| (AL390935) probable proteophosphoglycan [Leishmania major]
Length = 160
Score = 32.0 bits (71), Expect = 2.7
Identities = 17/42 (40%), Positives = 24/42 (56%)
Frame = +1
Query: 73 SQCLPSFRVSSAPPSPFDLSPRLSEASAPRASSAIPNLTNRS 198
S PS SSAP S +P S +SAP +SS+ P+ ++ S
Sbjct: 27 SSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSS 68
Score = 30.4 bits (67), Expect = 8.0
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 73 SQCLPSFRVSSAPPSPFDLSPRLSEASAPRASSAIPNLTNRS 198
S PS SSAP +P S +SAP +SS+ P+ ++ S
Sbjct: 90 SSSAPSASSSSAPXXSSSXAPSASSSSAPSSSSSAPSASSSS 131
>dbj|BAB84509.1| (AP004194) contains EST C72771(E2215)~unknown protein [Oryza sativa
(japonica cultivar-group)]
Length = 335
Score = 31.6 bits (70), Expect = 3.6
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = -2
Query: 249 GQRQRREACCGHDSAVVASIGKVRYRGGCSRCGGFAEPRGEVERRRWSGRHAKRG 85
G+RQR+ A G A A VR RGG ++ G + E RRW+G+ + G
Sbjct: 231 GRRQRKAAGLGAARARGARSAHVRGRGGAAQLGR-NTAQEERRGRRWAGKERREG 284
>ref|XP_092303.1| (XM_092303) hypothetical protein XP_092303 [Homo sapiens]
Length = 381
Score = 31.6 bits (70), Expect = 3.6
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +2
Query: 38 LLFQSNQSSSDCHNVSPRFACRPLHRRLSTSPRGSAKPPHLEHPPRYRTLPIEATTAES* 217
LL + + CH +S +AC SPRG A+PP + PR R + T AE
Sbjct: 58 LLTSGVDTGTPCH-LSDSWACVTPE---PNSPRGQARPPPIA-VPRARQRQAQGTLAEL- 111
Query: 218 PQQASRRWRC--PHRCHFLLVLQ 280
P+ S W C H H L V++
Sbjct: 112 PRSLSLAWTCGATHE-HLLFVIR 133
>ref|NP_189711.1| (NM_113991) hypothetical protein [Arabidopsis thaliana]
dbj|BAA97099.1| (AP002461) retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1098
Score = 31.6 bits (70), Expect = 3.6
Identities = 17/43 (39%), Positives = 22/43 (50%)
Frame = +1
Query: 85 PSFRVSSAPPSPFDLSPRLSEASAPRASSAIPNLTNRSHHSRV 213
PS S PPS SP LS S+P AS +P L + H ++
Sbjct: 873 PSSPSSPLPPSS---SPSLSPLSSPEASPGLPELLGKGHRQKL 912
>emb|CAB99178.1| (AL390189) conserved hypothetical protein [Neurospora crassa]
Length = 782
Score = 31.2 bits (69), Expect = 4.7
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +2
Query: 56 QSSSDCHNVSPRFACRPLHRRLSTSPRGSAKPPHLEHPPRYRTLPIEAT 202
QS ++ P CR LH S +P H E P RTLPI+ T
Sbjct: 49 QSPRRSNHAIPSIQCRRLHTEPSPEAHTPTEPLHAEKEP-IRTLPIQCT 96
>dbj|BAB55704.1| (AP003075) hypothetical protein [Oryza sativa (japonica
cultivar-group)]
Length = 185
Score = 30.8 bits (68), Expect = 6.1
Identities = 23/62 (37%), Positives = 27/62 (43%)
Frame = +2
Query: 86 PRFACRPLHRRLSTSPRGSAKPPHLEHPPRYRTLPIEATTAES*PQQASRRWRCPHRCHF 265
PR RP T P S +PP LE PPR RT+ A T + A+ R F
Sbjct: 18 PRARARPPSHYRHTPPSVSREPPPLEPPPR-RTIAAVALTEPARTSAAASLPRITAGAFF 76
Query: 266 LL 271
LL
Sbjct: 77 LL 78
>ref|XP_099228.1| (XM_099228) hypothetical protein XP_099228 [Homo sapiens]
Length = 438
Score = 30.4 bits (67), Expect = 8.0
Identities = 21/82 (25%), Positives = 30/82 (35%), Gaps = 4/82 (4%)
Frame = +2
Query: 11 PGSTRQIKLLLFQSNQSSSDCHN----VSPRFACRPLHRRLSTSPRGSAKPPHLEHPPRY 178
PG R+++ L + N V PR R T RG+A PP +HPP
Sbjct: 330 PGLRRKLQSELCDPGHAQPSLINRPFSVKPRGYNSSARGRRETQDRGTAPPPSRDHPPHP 389
Query: 179 RTLPIEATTAES*PQQASRRWR 244
+ + P RW+
Sbjct: 390 LRTALPSREVLRNPVPLDERWK 411
>gb|AAD27577.1|AF114171_19 (AF114171) hypothetical protein [Sorghum bicolor]
Length = 1475
Score = 30.4 bits (67), Expect = 8.0
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = -2
Query: 222 CG--HDSAVVASIGKVRYRGGC-SRCGGFAEPRGEVERRRWSGRHAKRG 85
CG S+ A G R GGC S CGG G + +GRHAK G
Sbjct: 957 CGTLFSSSTAADQGHSRSSGGCGSGCGGGGCGSGSMVAEGSTGRHAKSG 1005
>ref|NP_506013.1| (NM_073612) adducin [Caenorhabditis elegans]
sp|Q20952|ADD2_CAEEL Adducin-related protein 2
pir||T22855 hypothetical protein F57F5.4 - Caenorhabditis elegans
emb|CAB00100.1| (Z75953) contains similarity to Pfam domain: PF00596 (Class II
Aldolase and Adducin N-terminal domain.), Score=171.1,
E-value=5.9e-48, N=1~cDNA EST yk120b7.3 comes from this
gene~cDNA EST yk120b7.5 comes from this gene~cDNA EST
yk299h7.3 comes from thi>
gb|AAD49860.1|AF166171_1 (AF166171) adducin-head-domain-related protein [Caenorhabditis
elegans]
Length = 611
Score = 30.4 bits (67), Expect = 8.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 116 DGGADDTRNEGRHCDNQNYFGLIE 45
DG DDT N+G +C N +Y LI+
Sbjct: 3 DGSDDDTNNDGNYCKNVSYNFLIQ 26
>ref|NP_349868.1| (NC_003030) Possible surface protein, responsible for cell
interaction; contains cell adhesion domain and
ChW-repeats [Clostridium acetobutylicum]
gb|AAK81208.1|AE007823_2 (AE007823) Possible surface protein, responsible for cell
interaction; contains cell adhesion domain and
ChW-repeats [Clostridium acetobutylicum]
Length = 874
Score = 30.4 bits (67), Expect = 8.0
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 231 LGAGAVLIGATFFWFYRGGKPAAFDASGESTGMKSATK*IT 353
L A +TF W A+ DASG+ TG+K+ T IT
Sbjct: 418 LSAAVAPTNSTFVWTSSDSSIASVDASGKVTGIKAGTATIT 458
>dbj|BAA88546.1| (AP000969) Similar to hypothetical protein f678 - Escherichia coli.
(A65193) [Oryza sativa (japonica cultivar-group)]
dbj|BAA89567.1| (AP001073) Similar to hypothetical protein f678 - Escherichia coli.
(A65193) [Oryza sativa (japonica cultivar-group)]
Length = 1080
Score = 30.4 bits (67), Expect = 8.0
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 101 RPLHRRLSTSPRGSAKPPHLEHPPRYRTLPIEATTAES*PQQASRRWRCPH 253
RPL S++ + +PP EHP R+ T+ A + + P + RR R P+
Sbjct: 10 RPLTAPQSSTVAAAGRPPPSEHPTRWPTIVAAAGSGD--PLRQIRRRRSPY 58
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: Mar 29, 2002 2:16 AM
Number of letters in database: 284,333,007
Number of sequences in database: 907,641
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 263,318,028
Number of Sequences: 907641
Number of extensions: 5488180
Number of successful extensions: 20582
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 19234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20518
length of database: 284,333,007
effective HSP length: 111
effective length of database: 183,584,856
effective search space used: 10280751936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)