BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNT3/stackpack/blast_Mgr-N/FgrNT3_0_M23.seq
(505 letters)
Database: /phillip/Ncr/MgrN_SP
1206 sequences; 496,015 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGNS012CA10F.B mgns012cA10f.b LENGTH:378bp ; DIRECTION:0 ; CLONE... 28 0.74
MGNS011DG01F.B mgns011dG01f.b LENGTH:428bp ; DIRECTION:0 ; CLONE... 28 0.74
CL1CT1CN1 cl1ct1cn1 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:2; ESTS... 28 0.74
MGNS011BH04F.B mgns011bH04f.b LENGTH:451bp ; DIRECTION:0 ; CLONE... 26 2.9
MGNS010BH05F.B mgns010bH05f.b LENGTH:524bp ; DIRECTION:0 ; CLONE... 26 2.9
MGNS010AB04F.B mgns010aB04f.b LENGTH:505bp ; DIRECTION:0 ; CLONE... 26 2.9
MGNS007AD10F.B mgns007aD10f.b LENGTH:503bp ; DIRECTION:0 ; CLONE... 26 2.9
MGNS007AC07F.B mgns007aC07f.b LENGTH:537bp ; DIRECTION:0 ; CLONE... 26 2.9
MGNS001DF03F.B mgns001dF03f.b LENGTH:240bp ; DIRECTION:0 ; CLONE... 26 2.9
CL68CT76CN80 cl68ct76cn80 COVERAGE:0.97; CRAWID: 1; TOTAL_ESTS:4... 26 2.9
CL273CT285CN292 cl273ct285cn292 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 2.9
CL226CT237CN243 cl226ct237cn243 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 26 2.9
CL225CT236CN242 cl225ct236cn242 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 2.9
CL208CT219CN225 cl208ct219cn225 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 2.9
CL206CT217CN223 cl206ct217cn223 COVERAGE:0.98; CRAWID: 1; TOTAL_... 26 2.9
>MGNS012CA10F.B mgns012cA10f.b LENGTH:378bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 378
Score = 28.2 bits (14), Expect = 0.74
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 221 caacaagcttctcg 234
||||||||||||||
Sbjct: 262 caacaagcttctcg 275
>MGNS011DG01F.B mgns011dG01f.b LENGTH:428bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 428
Score = 28.2 bits (14), Expect = 0.74
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 172 gcgataccgaacct 185
||||||||||||||
Sbjct: 368 gcgataccgaacct 381
>CL1CT1CN1 cl1ct1cn1 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:2;
ESTS:mgns001aA01f.b,mgns007dE0
Length = 891
Score = 28.2 bits (14), Expect = 0.74
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 408 atgttgatcggcaa 421
||||||||||||||
Sbjct: 780 atgttgatcggcaa 767
>MGNS011BH04F.B mgns011bH04f.b LENGTH:451bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 451
Score = 26.3 bits (13), Expect = 2.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 242 cgctgtcctcatc 254
|||||||||||||
Sbjct: 339 cgctgtcctcatc 327
>MGNS010BH05F.B mgns010bH05f.b LENGTH:524bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 524
Score = 26.3 bits (13), Expect = 2.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 210 agtcgtgaccaca 222
|||||||||||||
Sbjct: 24 agtcgtgaccaca 36
>MGNS010AB04F.B mgns010aB04f.b LENGTH:505bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 505
Score = 26.3 bits (13), Expect = 2.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 75 acaatgtctcccc 87
|||||||||||||
Sbjct: 95 acaatgtctcccc 107
>MGNS007AD10F.B mgns007aD10f.b LENGTH:503bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 503
Score = 26.3 bits (13), Expect = 2.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 287 caaacccgcggcc 299
|||||||||||||
Sbjct: 48 caaacccgcggcc 60
>MGNS007AC07F.B mgns007aC07f.b LENGTH:537bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 537
Score = 26.3 bits (13), Expect = 2.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 474 acgttgcaacatg 486
|||||||||||||
Sbjct: 521 acgttgcaacatg 533
>MGNS001DF03F.B mgns001dF03f.b LENGTH:240bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 240
Score = 26.3 bits (13), Expect = 2.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 204 cagcagagtcgtg 216
|||||||||||||
Sbjct: 26 cagcagagtcgtg 14
>CL68CT76CN80 cl68ct76cn80 COVERAGE:0.97; CRAWID: 1; TOTAL_ESTS:4;
ESTS:mgns001cC05f.b,mgns001
Length = 529
Score = 26.3 bits (13), Expect = 2.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 413 gatcggcaacgag 425
|||||||||||||
Sbjct: 351 gatcggcaacgag 363
>CL273CT285CN292 cl273ct285cn292 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns011cB06f.b,mgns
Length = 521
Score = 26.3 bits (13), Expect = 2.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 46 tcaatcaaaccaa 58
|||||||||||||
Sbjct: 15 tcaatcaaaccaa 27
>CL226CT237CN243 cl226ct237cn243 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns008aF12f.b,mgns0
Length = 500
Score = 26.3 bits (13), Expect = 2.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 7 agctccgggttca 19
|||||||||||||
Sbjct: 419 agctccgggttca 407
>CL225CT236CN242 cl225ct236cn242 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns008aE10f.b,mgns
Length = 369
Score = 26.3 bits (13), Expect = 2.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 310 ctggcgagtctac 322
|||||||||||||
Sbjct: 356 ctggcgagtctac 368
>CL208CT219CN225 cl208ct219cn225 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns007cA09f.b,mgns
Length = 672
Score = 26.3 bits (13), Expect = 2.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 467 gcctctgacgttg 479
|||||||||||||
Sbjct: 605 gcctctgacgttg 617
>CL206CT217CN223 cl206ct217cn223 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:5; ESTS:mgns007bF08f.b,mgns
Length = 731
Score = 26.3 bits (13), Expect = 2.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 33 agctactactatt 45
|||||||||||||
Sbjct: 523 agctactactatt 535
Database: /phillip/Ncr/MgrN_SP
Posted date: Feb 18, 2002 5:07 PM
Number of letters in database: 496,015
Number of sequences in database: 1206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 141
Number of Sequences: 1206
Number of extensions: 141
Number of successful extensions: 44
Number of sequences better than 10.0: 15
length of query: 505
length of database: 496,015
effective HSP length: 13
effective length of query: 492
effective length of database: 480,337
effective search space: 236325804
effective search space used: 236325804
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)