BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNT3/stackpack/blast_Mgr-N/FgrNT3_0_O03.seq
(485 letters)
Database: /phillip/Ncr/MgrN_SP
1206 sequences; 496,015 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGNS013CF11F.B mgns013cF11f.b LENGTH:249bp ; DIRECTION:0 ; CLONE... 30 0.18
MGNS010CE12F.B mgns010cE12f.b LENGTH:387bp ; DIRECTION:0 ; CLONE... 30 0.18
MGNS010BA07F.B mgns010bA07f.b LENGTH:491bp ; DIRECTION:0 ; CLONE... 30 0.18
CL258CT270CN276 cl258ct270cn276 COVERAGE:0.99; CRAWID: 1; TOTAL_... 28 0.71
CL132CT143CN148 cl132ct143cn148 COVERAGE:0.97; CRAWID: 1; TOTAL_... 28 0.71
CL103CT114CN119 cl103ct114cn119 COVERAGE:0.98; CRAWID: 1; TOTAL_... 28 0.71
MGNS013AA05F.B mgns013aA05f.b LENGTH:327bp ; DIRECTION:0 ; CLONE... 26 2.8
MGNS012CB08F.B mgns012cB08f.b LENGTH:417bp ; DIRECTION:0 ; CLONE... 26 2.8
MGNS007CH06F.B mgns007cH06f.b LENGTH:86bp ; DIRECTION:0 ; CLONE:... 26 2.8
MGNS007CE10F.B mgns007cE10f.b LENGTH:516bp ; DIRECTION:0 ; CLONE... 26 2.8
MGNS007BG06F.B mgns007bG06f.b LENGTH:430bp ; DIRECTION:0 ; CLONE... 26 2.8
MGNS002CB05F.B mgns002cB05f.b LENGTH:355bp ; DIRECTION:0 ; CLONE... 26 2.8
MGNS001DH11F.B mgns001dH11f.b LENGTH:385bp ; DIRECTION:0 ; CLONE... 26 2.8
CL9CT10CN10 cl9ct10cn10 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:2; ... 26 2.8
CL281CT294CN301 cl281ct294cn301 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 2.8
CL251CT263CN269 cl251ct263cn269 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 26 2.8
CL243CT255CN261 cl243ct255cn261 COVERAGE:0.98; CRAWID: 1; TOTAL_... 26 2.8
CL187CT198CN204 cl187ct198cn204 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 2.8
CL154CT165CN171 cl154ct165cn171 COVERAGE:0.97; CRAWID: 1; TOTAL_... 26 2.8
>MGNS013CF11F.B mgns013cF11f.b LENGTH:249bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 249
Score = 30.2 bits (15), Expect = 0.18
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 392 gaggccgaggccgag 406
|||||||||||||||
Sbjct: 121 gaggccgaggccgag 135
>MGNS010CE12F.B mgns010cE12f.b LENGTH:387bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 387
Score = 30.2 bits (15), Expect = 0.18
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 26 acaatggcgcacaaa 40
|||||||||||||||
Sbjct: 225 acaatggcgcacaaa 239
>MGNS010BA07F.B mgns010bA07f.b LENGTH:491bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 491
Score = 30.2 bits (15), Expect = 0.18
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 392 gaggccgaggccgag 406
|||||||||||||||
Sbjct: 417 gaggccgaggccgag 431
>CL258CT270CN276 cl258ct270cn276 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns010aE10f.b,mgns
Length = 768
Score = 28.2 bits (14), Expect = 0.71
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 392 gaggccgaggccga 405
||||||||||||||
Sbjct: 505 gaggccgaggccga 518
>CL132CT143CN148 cl132ct143cn148 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns002bG07f.b,mgns
Length = 463
Score = 28.2 bits (14), Expect = 0.71
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 245 gccaacgtcgagga 258
||||||||||||||
Sbjct: 192 gccaacgtcgagga 205
>CL103CT114CN119 cl103ct114cn119 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgns002aB04f.b,mgns
Length = 446
Score = 28.2 bits (14), Expect = 0.71
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 395 gccgaggccgagat 408
||||||||||||||
Sbjct: 391 gccgaggccgagat 378
>MGNS013AA05F.B mgns013aA05f.b LENGTH:327bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 327
Score = 26.3 bits (13), Expect = 2.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 221 gtcaagccccctg 233
|||||||||||||
Sbjct: 176 gtcaagccccctg 164
>MGNS012CB08F.B mgns012cB08f.b LENGTH:417bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 417
Score = 26.3 bits (13), Expect = 2.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 198 acgaggcatgcaa 210
|||||||||||||
Sbjct: 31 acgaggcatgcaa 43
>MGNS007CH06F.B mgns007cH06f.b LENGTH:86bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:[
Length = 86
Score = 26.3 bits (13), Expect = 2.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 392 gaggccgaggccg 404
|||||||||||||
Sbjct: 61 gaggccgaggccg 73
>MGNS007CE10F.B mgns007cE10f.b LENGTH:516bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 516
Score = 26.3 bits (13), Expect = 2.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 213 tcctcaacgtcaa 225
|||||||||||||
Sbjct: 376 tcctcaacgtcaa 388
>MGNS007BG06F.B mgns007bG06f.b LENGTH:430bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 430
Score = 26.3 bits (13), Expect = 2.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 419 ttcaagcccaagg 431
|||||||||||||
Sbjct: 41 ttcaagcccaagg 29
>MGNS002CB05F.B mgns002cB05f.b LENGTH:355bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 355
Score = 26.3 bits (13), Expect = 2.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 134 cgcgcccaggtca 146
|||||||||||||
Sbjct: 265 cgcgcccaggtca 253
>MGNS001DH11F.B mgns001dH11f.b LENGTH:385bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 385
Score = 26.3 bits (13), Expect = 2.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 377 ttacgggagaaaa 389
|||||||||||||
Sbjct: 33 ttacgggagaaaa 45
>CL9CT10CN10 cl9ct10cn10 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:2;
ESTS:mgns001aB02f.b,mgns007d
Length = 554
Score = 26.3 bits (13), Expect = 2.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 107 caagctcaggctg 119
|||||||||||||
Sbjct: 98 caagctcaggctg 110
>CL281CT294CN301 cl281ct294cn301 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns012aD12f.b,mgns
Length = 515
Score = 26.3 bits (13), Expect = 2.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 398 gaggccgagatca 410
|||||||||||||
Sbjct: 188 gaggccgagatca 176
>CL251CT263CN269 cl251ct263cn269 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns009cD12f.b,mgns0
Length = 368
Score = 26.3 bits (13), Expect = 2.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 397 cgaggccgagatc 409
|||||||||||||
Sbjct: 8 cgaggccgagatc 20
>CL243CT255CN261 cl243ct255cn261 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns009bA11f.b,mgns
Length = 367
Score = 26.3 bits (13), Expect = 2.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 50 acagccttcttga 62
|||||||||||||
Sbjct: 69 acagccttcttga 57
>CL187CT198CN204 cl187ct198cn204 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns007aD02f.b,mgns
Length = 852
Score = 26.3 bits (13), Expect = 2.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 406 gatcaaagaaggc 418
|||||||||||||
Sbjct: 82 gatcaaagaaggc 70
>CL154CT165CN171 cl154ct165cn171 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:4; ESTS:mgns002dE01f.b,mgns
Length = 435
Score = 26.3 bits (13), Expect = 2.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 183 caggcatgaccct 195
|||||||||||||
Sbjct: 410 caggcatgaccct 398
Database: /phillip/Ncr/MgrN_SP
Posted date: Feb 18, 2002 5:07 PM
Number of letters in database: 496,015
Number of sequences in database: 1206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 182
Number of Sequences: 1206
Number of extensions: 182
Number of successful extensions: 48
Number of sequences better than 10.0: 19
length of query: 485
length of database: 496,015
effective HSP length: 13
effective length of query: 472
effective length of database: 480,337
effective search space: 226719064
effective search space used: 226719064
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)