BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNT3/stackpack/blast_Mgr-N/FgrNT3_0_O15.seq
(215 letters)
Database: /phillip/Ncr/MgrN_SP
1206 sequences; 496,015 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGNS010BF10F.B mgns010bF10f.b LENGTH:464bp ; DIRECTION:0 ; CLONE... 28 0.30
MGNS013CH02F.B mgns013cH02f.b LENGTH:79bp ; DIRECTION:0 ; CLONE:... 26 1.2
MGNS008CG10F.B mgns008cG10f.b LENGTH:483bp ; DIRECTION:0 ; CLONE... 26 1.2
CL75CT84CN88 cl75ct84cn88 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:2... 26 1.2
CL24CT30CN33 cl24ct30cn33 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:1... 26 1.2
CL198CT209CN215 cl198ct209cn215 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 1.2
CL183CT194CN200 cl183ct194cn200 COVERAGE:0.98; CRAWID: 1; TOTAL_... 26 1.2
CL174CT185CN191 cl174ct185cn191 COVERAGE:0.95; CRAWID: 1; TOTAL_... 26 1.2
MGNS011DE07F.B mgns011dE07f.b LENGTH:314bp ; DIRECTION:0 ; CLONE... 24 4.8
MGNS011CH05F.B mgns011cH05f.b LENGTH:438bp ; DIRECTION:0 ; CLONE... 24 4.8
MGNS010AD11F.B mgns010aD11f.b LENGTH:309bp ; DIRECTION:0 ; CLONE... 24 4.8
MGNS009BA12F.B mgns009bA12f.b LENGTH:227bp ; DIRECTION:0 ; CLONE... 24 4.8
MGNS008BE10F.B mgns008bE10f.b LENGTH:312bp ; DIRECTION:0 ; CLONE... 24 4.8
MGNS002DE09F.B mgns002dE09f.b LENGTH:336bp ; DIRECTION:0 ; CLONE... 24 4.8
MGNS001AD10F.B mgns001aD10f.b LENGTH:545bp ; DIRECTION:0 ; CLONE... 24 4.8
CL199CT210CN216 cl199ct210cn216 COVERAGE:0.99; CRAWID: 1; TOTAL_... 24 4.8
>MGNS010BF10F.B mgns010bF10f.b LENGTH:464bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 464
Score = 28.2 bits (14), Expect = 0.30
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 139 tcatcatggccgac 152
||||||||||||||
Sbjct: 174 tcatcatggccgac 187
>MGNS013CH02F.B mgns013cH02f.b LENGTH:79bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:[
Length = 79
Score = 26.3 bits (13), Expect = 1.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 143 catggccgacgat 155
|||||||||||||
Sbjct: 40 catggccgacgat 52
>MGNS008CG10F.B mgns008cG10f.b LENGTH:483bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 483
Score = 26.3 bits (13), Expect = 1.2
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 134 cctgctcatcatggccg 150
|||| ||||||||||||
Sbjct: 434 cctggtcatcatggccg 450
>CL75CT84CN88 cl75ct84cn88 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:2;
ESTS:mgns001cF01f.b,mgns008
Length = 329
Score = 26.3 bits (13), Expect = 1.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 143 catggccgacgat 155
|||||||||||||
Sbjct: 91 catggccgacgat 103
>CL24CT30CN33 cl24ct30cn33 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:13;
ESTS:mgns001aE03f.b,mgns00
Length = 769
Score = 26.3 bits (13), Expect = 1.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 193 actatgaccccca 205
|||||||||||||
Sbjct: 227 actatgaccccca 239
>CL198CT209CN215 cl198ct209cn215 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgns007bC03f.b,mgns
Length = 489
Score = 26.3 bits (13), Expect = 1.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 141 atcatggccgacg 153
|||||||||||||
Sbjct: 156 atcatggccgacg 168
>CL183CT194CN200 cl183ct194cn200 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgns007aB03f.b,mgns
Length = 695
Score = 26.3 bits (13), Expect = 1.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 137 gctcatcatggcc 149
|||||||||||||
Sbjct: 497 gctcatcatggcc 509
>CL174CT185CN191 cl174ct185cn191 COVERAGE:0.95; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgns004cD03f.b,mgns
Length = 527
Score = 26.3 bits (13), Expect = 1.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 6 cttgaaccattcc 18
|||||||||||||
Sbjct: 382 cttgaaccattcc 370
>MGNS011DE07F.B mgns011dE07f.b LENGTH:314bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 314
Score = 24.3 bits (12), Expect = 4.8
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 150 gacgattctgcc 161
||||||||||||
Sbjct: 31 gacgattctgcc 42
>MGNS011CH05F.B mgns011cH05f.b LENGTH:438bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 438
Score = 24.3 bits (12), Expect = 4.8
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 89 gtctttttcaat 100
||||||||||||
Sbjct: 409 gtctttttcaat 420
>MGNS010AD11F.B mgns010aD11f.b LENGTH:309bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 309
Score = 24.3 bits (12), Expect = 4.8
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 140 catcatggccga 151
||||||||||||
Sbjct: 157 catcatggccga 146
>MGNS009BA12F.B mgns009bA12f.b LENGTH:227bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 227
Score = 24.3 bits (12), Expect = 4.8
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 204 caagatcacctc 215
||||||||||||
Sbjct: 131 caagatcacctc 120
>MGNS008BE10F.B mgns008bE10f.b LENGTH:312bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 312
Score = 24.3 bits (12), Expect = 4.8
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 16 tccttttccttt 27
||||||||||||
Sbjct: 198 tccttttccttt 187
>MGNS002DE09F.B mgns002dE09f.b LENGTH:336bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 336
Score = 24.3 bits (12), Expect = 4.8
Identities = 15/16 (93%)
Strand = Plus / Plus
Query: 138 ctcatcatggccgacg 153
|||| |||||||||||
Sbjct: 212 ctcaacatggccgacg 227
>MGNS001AD10F.B mgns001aD10f.b LENGTH:545bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 545
Score = 24.3 bits (12), Expect = 4.8
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 159 gccccccttgct 170
||||||||||||
Sbjct: 510 gccccccttgct 499
>CL199CT210CN216 cl199ct210cn216 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns007bC10f.b,mgns
Length = 493
Score = 24.3 bits (12), Expect = 4.8
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 38 gacaactgggtc 49
||||||||||||
Sbjct: 41 gacaactgggtc 30
Database: /phillip/Ncr/MgrN_SP
Posted date: Feb 18, 2002 5:07 PM
Number of letters in database: 496,015
Number of sequences in database: 1206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 46
Number of Sequences: 1206
Number of extensions: 46
Number of successful extensions: 16
Number of sequences better than 10.0: 16
length of query: 215
length of database: 496,015
effective HSP length: 13
effective length of query: 202
effective length of database: 480,337
effective search space: 97028074
effective search space used: 97028074
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 12 (24.3 bits)