BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNT3/stackpack/blast_Mgr-N/FgrNT3_10_A05.seq
(508 letters)
Database: /phillip/Ncr/MgrN_SP
1206 sequences; 496,015 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGNS009CF02F.B mgns009cF02f.b LENGTH:389bp ; DIRECTION:0 ; CLONE... 28 0.75
CL5CT5CN5 cl5ct5cn5 COVERAGE:0.96; CRAWID: 1; TOTAL_ESTS:2; ESTS... 28 0.75
MGNS011BC03F.B mgns011bC03f.b LENGTH:344bp ; DIRECTION:0 ; CLONE... 26 3.0
MGNS008BD03F.B mgns008bD03f.b LENGTH:360bp ; DIRECTION:0 ; CLONE... 26 3.0
MGNS008AC09F.B mgns008aC09f.b LENGTH:453bp ; DIRECTION:0 ; CLONE... 26 3.0
MGNS007DG04F.B mgns007dG04f.b LENGTH:478bp ; DIRECTION:0 ; CLONE... 26 3.0
MGNS007BG03F.B mgns007bG03f.b LENGTH:433bp ; DIRECTION:0 ; CLONE... 26 3.0
MGNS002BD03F.B mgns002bD03f.b LENGTH:336bp ; DIRECTION:0 ; CLONE... 26 3.0
MGNS001DH11F.B mgns001dH11f.b LENGTH:385bp ; DIRECTION:0 ; CLONE... 26 3.0
MGNS001BD01F.B mgns001bD01f.b LENGTH:477bp ; DIRECTION:0 ; CLONE... 26 3.0
CL258CT270CN276 cl258ct270cn276 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 3.0
>MGNS009CF02F.B mgns009cF02f.b LENGTH:389bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 389
Score = 28.2 bits (14), Expect = 0.75
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 468 agccagagccagca 481
||||||||||||||
Sbjct: 360 agccagagccagca 347
>CL5CT5CN5 cl5ct5cn5 COVERAGE:0.96; CRAWID: 1; TOTAL_ESTS:2;
ESTS:mgns001aA07f.b,mgns007aB1
Length = 440
Score = 28.2 bits (14), Expect = 0.75
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 348 ggtgccaaccagcg 361
||||||||||||||
Sbjct: 125 ggtgccaaccagcg 138
>MGNS011BC03F.B mgns011bC03f.b LENGTH:344bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 344
Score = 26.3 bits (13), Expect = 3.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 191 gatcacaaaggca 203
|||||||||||||
Sbjct: 183 gatcacaaaggca 171
>MGNS008BD03F.B mgns008bD03f.b LENGTH:360bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 360
Score = 26.3 bits (13), Expect = 3.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 42 cactctttgccaa 54
|||||||||||||
Sbjct: 98 cactctttgccaa 110
>MGNS008AC09F.B mgns008aC09f.b LENGTH:453bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 453
Score = 26.3 bits (13), Expect = 3.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 32 gattgcaacacac 44
|||||||||||||
Sbjct: 435 gattgcaacacac 447
>MGNS007DG04F.B mgns007dG04f.b LENGTH:478bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 478
Score = 26.3 bits (13), Expect = 3.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 181 agactgtcaagat 193
|||||||||||||
Sbjct: 362 agactgtcaagat 374
>MGNS007BG03F.B mgns007bG03f.b LENGTH:433bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 433
Score = 26.3 bits (13), Expect = 3.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 366 ggtcccgacgatg 378
|||||||||||||
Sbjct: 200 ggtcccgacgatg 188
>MGNS002BD03F.B mgns002bD03f.b LENGTH:336bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 336
Score = 26.3 bits (13), Expect = 3.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 313 tcgtcttcaccgt 325
|||||||||||||
Sbjct: 216 tcgtcttcaccgt 228
>MGNS001DH11F.B mgns001dH11f.b LENGTH:385bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 385
Score = 26.3 bits (13), Expect = 3.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 115 tcatcacaatgtc 127
|||||||||||||
Sbjct: 108 tcatcacaatgtc 120
>MGNS001BD01F.B mgns001bD01f.b LENGTH:477bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 477
Score = 26.3 bits (13), Expect = 3.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 260 tgctatggacttg 272
|||||||||||||
Sbjct: 374 tgctatggacttg 386
>CL258CT270CN276 cl258ct270cn276 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns010aE10f.b,mgns
Length = 768
Score = 26.3 bits (13), Expect = 3.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 250 cacacgactatgc 262
|||||||||||||
Sbjct: 175 cacacgactatgc 187
Database: /phillip/Ncr/MgrN_SP
Posted date: Feb 18, 2002 5:07 PM
Number of letters in database: 496,015
Number of sequences in database: 1206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 110
Number of Sequences: 1206
Number of extensions: 110
Number of successful extensions: 32
Number of sequences better than 10.0: 11
length of query: 508
length of database: 496,015
effective HSP length: 13
effective length of query: 495
effective length of database: 480,337
effective search space: 237766815
effective search space used: 237766815
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)