The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FgrNT3_10_A19.seq Fgr_10_A19 LENGTH:669bp ; DIRECTION:5
; CLONE:Fgr_10_A19 ; CLONELIB: n/a ; TISSU
(669 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
907,641 sequences; 284,333,007 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_035374.2| (XM_035374) similar to Mad4 homolog (H. sa... 38 0.071
gb|AAF58561.1| (AE003823) CG13175 gene product [Drosophila ... 34 1.3
ref|NP_251035.1| (NC_002516) conserved hypothetical protein... 33 2.3
ref|NP_232343.1| (NC_002505) conserved hypothetical protein... 33 3.0
gb|AAH00015.1|AAH00015 (BC000015) Similar to liver-specific... 33 3.0
dbj|BAB79696.1| (AB064320) vitellogenin 1 [Oryzias latipes] 33 3.0
emb|CAB55390.1| (AL117264) zwh0006.1 [Oryza sativa] 33 3.0
gb|AAH04381.1|AAH04381 (BC004381) Similar to liver-specific... 33 3.0
sp|P58028|AOFB_CAVPO Amine oxidase [flavin-containing] B (M... 32 3.9
gb|AAD27574.1|AF114171_16 (AF114171) hypothetical protein [... 32 3.9
ref|XP_063795.1| (XM_063795) similar to RIKEN cDNA 5730465C... 32 5.1
ref|NP_064411.1| (NM_020027) Bat2; DNA segment, Chr 17, hum... 32 5.1
gb|AAH06664.1|AAH06664 (BC006664) Similar to RIKEN cDNA 311... 32 5.1
dbj|BAB31852.1| (AK019785) data source:SPTR, source key:Q9N... 32 5.1
ref|NP_373178.1| (NC_002758) hypothetical protein [Staphylo... 32 6.6
gb|AAF48483.1| (AE003499) CG8119 gene product [Drosophila m... 31 8.6
gb|AAL74261.1|AF466765_1 (AF466765) B cell surface marker C... 31 8.6
sp|P46501|YLX5_CAEEL HYPOTHETICAL 84.8 KD PROTEIN F23F12.5 ... 31 8.6
ref|NP_071180.1| (NC_000917) conserved hypothetical protein... 31 8.6
>ref|XP_035374.2| (XM_035374) similar to Mad4 homolog (H. sapiens) [Homo sapiens]
Length = 179
Score = 38.1 bits (87), Expect = 0.071
Identities = 27/85 (31%), Positives = 34/85 (39%), Gaps = 2/85 (2%)
Frame = -3
Query: 316 RGWPEQAPTQRACPEPWRASQP--RGRSSCRGLGGAPRETDG*D*QQRHGTRSPCRRGCS 143
RGW + RA WRA +P RG RG GG + G RS CRR C
Sbjct: 57 RGWRQLKENWRADTRGWRAGRPRSRGHGPTRGRGGPAAGS---------GARSHCRRRCH 107
Query: 142 ASGAPVP*GQDQWYLGGKPK*EACQ 68
++G G+P+ CQ
Sbjct: 108 SAGC-----------SGRPRHCCCQ 121
>gb|AAF58561.1| (AE003823) CG13175 gene product [Drosophila melanogaster]
Length = 141
Score = 33.9 bits (76), Expect = 1.3
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = +1
Query: 214 ERLRGLGKSY----DPEADWRAKVQDMRAEWELVQANRGPKETEGAMPED 351
E+LR L + + DP+AD VQD+R+ ++A G K+T GA P +
Sbjct: 81 EQLRSLIEEFPRTNDPQADIVGAVQDIRSSHRRLRAQLGSKKTPGAAPAE 130
>ref|NP_251035.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||G83353 conserved hypothetical protein PA2345 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG05733.1|AE004660_9 (AE004660) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 411
Score = 33.1 bits (74), Expect = 2.3
Identities = 30/101 (29%), Positives = 43/101 (41%), Gaps = 3/101 (2%)
Frame = +1
Query: 52 PWFGLVGMLLTWVFLPDTTGLDLKEQERRWHYIRDGKESEYHGVAVNPIHLSLWERLRGL 231
P GLV + W+ T ++ + E R + G EY + V P WER+ GL
Sbjct: 69 PMAGLVPPGVEWL----RTRVERVDPEARRLLLEGGDSLEYRNLIVCPGLRLAWERIEGL 124
Query: 232 GKSYDPEADWRAKVQDMRA-EWELVQANRGPKE--TEGAMP 345
++ D+ WELV+ RG K T+ AMP
Sbjct: 125 EETLGRNGVTSNYRYDLAPYTWELVRGLRGGKALFTQPAMP 165
>ref|NP_232343.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||E82042 conserved hypothetical protein VC2716 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF95856.1| (AE004337) conserved hypothetical protein [Vibrio cholerae]
Length = 773
Score = 32.7 bits (73), Expect = 3.0
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Frame = +2
Query: 518 VTNHYHIHMSSY----WSERLIAWVWR*RYSMH 604
+ HY IH+S W +++I+W W+ + SMH
Sbjct: 257 IAEHYGIHLSQATADAWRKQVISWAWKIKISMH 289
>gb|AAH00015.1|AAH00015 (BC000015) Similar to liver-specific bHLH-Zip transcription factor
[Homo sapiens]
Length = 585
Score = 32.7 bits (73), Expect = 3.0
Identities = 26/71 (36%), Positives = 31/71 (43%)
Frame = -3
Query: 334 PRSPWGRGWPEQAPTQRACPEPWRASQPRGRSSCRGLGGAPRETDG*D*QQRHGTRSPCR 155
PRSP RGW +Q P + WRA +PR RS P T G+RSP
Sbjct: 400 PRSP--RGW-DQEPAREQAGGGWRARRPRARSVDALDDLTPPST------AESGSRSPTS 450
Query: 154 RGCSASGAPVP 122
G S A +P
Sbjct: 451 NGGRRSRAYMP 461
>dbj|BAB79696.1| (AB064320) vitellogenin 1 [Oryzias latipes]
Length = 1678
Score = 32.7 bits (73), Expect = 3.0
Identities = 35/116 (30%), Positives = 51/116 (43%)
Frame = -2
Query: 623 SSIKTSNALNTVNAKPMLSAARSSKMTYVCGSDSLRMPSSRKGRNYFVIESSEGAAVFSF 444
+ I TSN T ++ S++ SSK + S S S G + SS ++ S
Sbjct: 1059 NKILTSNLNRTSSSSSSSSSSSSSKHSSKSSSSSSSSSSRPSGSSSSSNSSSSSSSRNSS 1118
Query: 443 TESTMSDSSRRPMCLGLERLKNSWISGENSPSSGIAPSVSLGPRLA*TSSHSARMS 276
++S S SSRR RL +S +S SS + SL + +S SAR S
Sbjct: 1119 SKS--SSSSRRSSSSSSSRLSSSRSFSNSSRSSSASSLASLFSAESSSSRDSARRS 1172
>emb|CAB55390.1| (AL117264) zwh0006.1 [Oryza sativa]
Length = 136
Score = 32.7 bits (73), Expect = 3.0
Identities = 18/42 (42%), Positives = 21/42 (49%)
Frame = +3
Query: 222 PRPRQELRPRG*LARQGSGHAR*VGACSGQPRPQGDRGCYAR 347
PRP Q+ P R+ S H V C +PR G RGC AR
Sbjct: 23 PRPAQQHNPHA-ACRKNSAH---VCVCEARPRSHGARGCRAR 60
>gb|AAH04381.1|AAH04381 (BC004381) Similar to liver-specific bHLH-Zip transcription factor
[Homo sapiens]
Length = 583
Score = 32.7 bits (73), Expect = 3.0
Identities = 26/71 (36%), Positives = 31/71 (43%)
Frame = -3
Query: 334 PRSPWGRGWPEQAPTQRACPEPWRASQPRGRSSCRGLGGAPRETDG*D*QQRHGTRSPCR 155
PRSP RGW +Q P + WRA +PR RS P T G+RSP
Sbjct: 398 PRSP--RGW-DQEPAREQAGGGWRARRPRARSVDALDDLTPPST------AESGSRSPTS 448
Query: 154 RGCSASGAPVP 122
G S A +P
Sbjct: 449 NGGRRSRAYMP 459
>sp|P58028|AOFB_CAVPO Amine oxidase [flavin-containing] B (Monoamine oxidase) (MAO-B)
dbj|BAB40418.1| (AB047271) putative monoamine oxidase B [Cavia porcellus]
Length = 520
Score = 32.3 bits (72), Expect = 3.9
Identities = 20/67 (29%), Positives = 35/67 (51%), Gaps = 7/67 (10%)
Frame = +1
Query: 118 LKEQERRWHYIRDGKESEYHGV---AVNPI----HLSLWERLRGLGKSYDPEADWRAKVQ 276
+ + ER+ H+++ GK + G A NPI H +LW + +GK +A W+A +
Sbjct: 82 VNDVERQIHHVK-GKSYPFRGPFPPAWNPISYLDHNNLWRTMDDMGKEIPSDAPWKAPLA 140
Query: 277 DMRAEWE 297
+ EW+
Sbjct: 141 E---EWD 144
>gb|AAD27574.1|AF114171_16 (AF114171) hypothetical protein [Sorghum bicolor]
Length = 138
Score = 32.3 bits (72), Expect = 3.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 346 EDGEFSPEIHEFFKRSSPKHIGRRDESLMVDSVNEKTAAPS 468
+D FSP ++ +R SP H E L + V+E+ PS
Sbjct: 43 DDPRFSPPARDWLRRESPSHSPEESEPLRSNDVDEEMETPS 83
>ref|XP_063795.1| (XM_063795) similar to RIKEN cDNA 5730465C04 [Homo sapiens]
Length = 216
Score = 32.0 bits (71), Expect = 5.1
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 14/98 (14%)
Frame = -3
Query: 382 RTRGSQERTRHLRA*HPRSPWGRGWPEQAPTQRACPEPW---RASQPRGRSSCRGLGGAP 212
++RG ++ + + +S GRG Q P +R P + S RG S G P
Sbjct: 56 KSRGGRKPGQRGQNAAAKSRDGRGKKAQKPRRRGAKSPGGGGKTSPRRGAKSLGSAGKKP 115
Query: 211 RETD-------G*D*QQR----HGTRSPCRRGCSASGA 131
R + G Q+R HG++ P RRG A GA
Sbjct: 116 RRREQKAAAAGGKKPQRRGQKCHGSKKPLRRGKKAVGA 153
>ref|NP_064411.1| (NM_020027) Bat2; DNA segment, Chr 17, human D6S51E; RIKEN cDNA
3110039B05 gene [Mus musculus]
gb|AAC82480.1|AAC82480 (AF109719) BAT2 [Mus musculus]
Length = 2157
Score = 32.0 bits (71), Expect = 5.1
Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 13/98 (13%)
Frame = -3
Query: 337 HPRSPWGRGWPEQAPTQRACPEPWRASQPRGRSSC-------------RGLGGAPRETDG 197
HPR G P QAP + P R PR S+ RG+GG PR++ G
Sbjct: 1492 HPRPKPG---PPQAPQGSSPRPPTRYDPPRASSAISSDPHFEEPGPMVRGVGGTPRDSAG 1548
Query: 196 *D*QQRHGTRSPCRRGCSASGAPVP*GQDQWYLGGKPK 83
+ P R+ VP +LG KP+
Sbjct: 1549 VNPFPPKRRERPPRKPELLQEETVPASHSSGFLGSKPE 1586
>gb|AAH06664.1|AAH06664 (BC006664) Similar to RIKEN cDNA 3110039B05 gene [Mus musculus]
Length = 950
Score = 32.0 bits (71), Expect = 5.1
Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 13/98 (13%)
Frame = -3
Query: 337 HPRSPWGRGWPEQAPTQRACPEPWRASQPRGRSSC-------------RGLGGAPRETDG 197
HPR G P QAP + P R PR S+ RG+GG PR++ G
Sbjct: 284 HPRPKPG---PPQAPQGSSPRPPTRYDPPRASSAISSDPHFEEPGPMVRGVGGTPRDSAG 340
Query: 196 *D*QQRHGTRSPCRRGCSASGAPVP*GQDQWYLGGKPK 83
+ P R+ VP +LG KP+
Sbjct: 341 VNPFPPKRRERPPRKPELLQEETVPASHSSGFLGSKPE 378
>dbj|BAB31852.1| (AK019785) data source:SPTR, source key:Q9NQV8,
evidence:ISS~homolog to PR-DOMAIN CONTAINING PROTEIN
8~putative [Mus musculus]
Length = 271
Score = 32.0 bits (71), Expect = 5.1
Identities = 34/99 (34%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
Frame = -3
Query: 316 RGWPEQAPTQRACPEPWRASQPRGRSSC--RGLGGAPRETDG*D*QQRHGTRSP-----C 158
R P P +R P P AS PRG S R +PR++ G R RSP C
Sbjct: 57 RRGPRPCPLRRLSPPPPPASPPRGPPSSPPRRRCASPRQSPG--WAARRAGRSPPGRSSC 114
Query: 157 -RRGCSASGAPVP*GQDQWYLGGKPK*EACQRDRTRGRR 44
RRG +A+ P P W + A R T GRR
Sbjct: 115 RRRGTAAACTPTP----PWRSAAGFRRSAHGRPPTPGRR 149
>ref|NP_373178.1| (NC_002758) hypothetical protein [Staphylococcus aureus subsp. aureus
Mu50]
ref|NP_375773.1| (NC_002745) hypothetical protein, similar to streptococcal
hemagglutinin protein [Staphylococcus aureus subsp.
aureus N315]
dbj|BAB43752.1| (AP003138) ORFID:SA2447~hypothetical protein, similar to
streptococcal hemagglutinin protein [Staphylococcus
aureus subsp. aureus N315]
dbj|BAB58816.1| (AP003366) hypothetical protein [Staphylococcus aureus subsp. aureus
Mu50]
Length = 2271
Score = 31.6 bits (70), Expect = 6.6
Identities = 28/123 (22%), Positives = 53/123 (42%)
Frame = -2
Query: 620 SIKTSNALNTVNAKPMLSAARSSKMTYVCGSDSLRMPSSRKGRNYFVIESSEGAAVFSFT 441
S+ TS +L+T N++ ++ S SDS+ +S I +SE ++
Sbjct: 1136 SVSTSTSLSTSNSERTSTSVSDSTSLSTSESDSISESTSTSDSISEAISASESTSISLSE 1195
Query: 440 ESTMSDSSRRPMCLGLERLKNSWISGENSPSSGIAPSVSLGPRLA*TSSHSARMS*TLAR 261
++ SDS + L + S S S ++ S S L+ ++S S S +L+
Sbjct: 1196 SNSTSDSESQSASAFLSESLSE--STSESTSESVSSSTSESTSLSDSTSESGSTSTSLSN 1253
Query: 260 QSA 252
++
Sbjct: 1254 STS 1256
>gb|AAF48483.1| (AE003499) CG8119 gene product [Drosophila melanogaster]
Length = 244
Score = 31.2 bits (69), Expect = 8.6
Identities = 18/67 (26%), Positives = 34/67 (49%), Gaps = 1/67 (1%)
Frame = +1
Query: 79 LTWVFLPDTTGLDLKEQERRWHYIRDGKESEYH-GVAVNPIHLSLWERLRGLGKSYDPEA 255
+ W+ + + GL + E +RRW +R+ ++ H G A + H E +R + + P+
Sbjct: 44 IDWLDVSNAVGLGVDECKRRWKSLRNNYRTKIHQGNAWSWPHSKQMEFVRDVFPPHKPKT 103
Query: 256 DWRAKVQ 276
R +VQ
Sbjct: 104 PARCRVQ 110
>gb|AAL74261.1|AF466765_1 (AF466765) B cell surface marker CD19 [Sus scrofa]
Length = 571
Score = 31.2 bits (69), Expect = 8.6
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Frame = +1
Query: 154 DGKESEYHGV-AVNPIHLSLWERLR---GLGKSYDPEADWRAKVQDMRAEWELVQANRGP 321
+G +++Y V +++ H LR GLG + + R+ VQ+ RA GP
Sbjct: 357 NGAQNQYGNVLSLSTPHSGTGRALRWAAGLGAAVPSYGNPRSDVQEARAAGSRSPPGTGP 416
Query: 322 KETEGAMPEDGEFSPEIHEFFKRSSPKHIGRRDESLMVDSVN-----EKTAAPSDD 474
+E EG E+ + S E EF++ S ++GR + L D N E P D+
Sbjct: 417 EEEEGEAYEEPD-SEEGSEFYENDS--NLGR--DQLSQDGSNYENPEEGVLGPEDE 467
>sp|P46501|YLX5_CAEEL HYPOTHETICAL 84.8 KD PROTEIN F23F12.5 IN CHROMOSOME III
Length = 751
Score = 31.2 bits (69), Expect = 8.6
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +1
Query: 1 LLASVLYIDD---QTKFYVVPWFGLVGMLLTWVFLPDTTGLDLKEQERRWHYIRDGKESE 171
L + Y+ D + VV G + +L++ VFLPDT G+DL + D K+S
Sbjct: 664 LAPQMAYLSDIYRPAPYAVVCSIGTISLLISCVFLPDTKGVDLAALDPTEELDYDRKKSM 723
Query: 172 YHGVAV 189
+ +
Sbjct: 724 TENIVI 729
>ref|NP_071180.1| (NC_000917) conserved hypothetical protein [Archaeoglobus fulgidus]
pir||F69544 conserved hypothetical protein AF2358 - Archaeoglobus fulgidus
gb|AAB91305.1| (AE001113) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 392
Score = 31.2 bits (69), Expect = 8.6
Identities = 21/62 (33%), Positives = 30/62 (47%), Gaps = 2/62 (3%)
Frame = +1
Query: 253 ADWRAKVQDMRAEWELVQANRGPKETEG-AMPEDGEFSPEIHEFFKR-SSPKHIGRRDES 426
A+ AK+ R +W +NRGP +G E GE S + E +K S +H + S
Sbjct: 6 AEQAAKLSISREKWARPDSNRGPSPRQGDVQMEGGEQSEVVKESYKNLSESEHKKQSSGS 65
Query: 427 LM 432
LM
Sbjct: 66 LM 67
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: Mar 29, 2002 2:16 AM
Number of letters in database: 284,333,007
Number of sequences in database: 907,641
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 355,374,960
Number of Sequences: 907641
Number of extensions: 7985007
Number of successful extensions: 23540
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 22194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23499
length of database: 284,333,007
effective HSP length: 116
effective length of database: 179,046,651
effective search space used: 18978945006
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)