BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNT3/stackpack/blast_Mgr-N/FgrNT3_10_A19.seq
(669 letters)
Database: /phillip/Ncr/MgrN_SP
1206 sequences; 496,015 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGNS002CE08F.B mgns002cE08f.b LENGTH:326bp ; DIRECTION:0 ; CLONE... 28 0.99
CL64CT72CN75 cl64ct72cn75 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:2... 28 0.99
MGNS011BC03F.B mgns011bC03f.b LENGTH:344bp ; DIRECTION:0 ; CLONE... 26 3.9
MGNS010AB01F.B mgns010aB01f.b LENGTH:330bp ; DIRECTION:0 ; CLONE... 26 3.9
MGNS008BG10F.B mgns008bG10f.b LENGTH:436bp ; DIRECTION:0 ; CLONE... 26 3.9
MGNS007DF08F.B mgns007dF08f.b LENGTH:494bp ; DIRECTION:0 ; CLONE... 26 3.9
MGNS002DC05F.B mgns002dC05f.b LENGTH:366bp ; DIRECTION:0 ; CLONE... 26 3.9
MGNS001AF06F.B mgns001aF06f.b LENGTH:368bp ; DIRECTION:0 ; CLONE... 26 3.9
CL3CT3CN3 cl3ct3cn3 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:2; ESTS... 26 3.9
CL270CT282CN289 cl270ct282cn289 COVERAGE:0.97; CRAWID: 1; TOTAL_... 26 3.9
CL263CT275CN281 cl263ct275cn281 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 26 3.9
CL22CT28CN31 cl22ct28cn31 COVERAGE:0.94; CRAWID: 1; TOTAL_ESTS:4... 26 3.9
CL201CT212CN218 cl201ct212cn218 COVERAGE:0.98; CRAWID: 1; TOTAL_... 26 3.9
>MGNS002CE08F.B mgns002cE08f.b LENGTH:326bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 326
Score = 28.2 bits (14), Expect = 0.99
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 392 ctagccccaagcac 405
||||||||||||||
Sbjct: 3 ctagccccaagcac 16
>CL64CT72CN75 cl64ct72cn75 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:2;
ESTS:mgns001cA08f.b,mgns010
Length = 550
Score = 28.2 bits (14), Expect = 0.99
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 52 ccctggttcggtct 65
||||||||||||||
Sbjct: 520 ccctggttcggtct 533
>MGNS011BC03F.B mgns011bC03f.b LENGTH:344bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 344
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 409 ggtcgacgagacg 421
|||||||||||||
Sbjct: 231 ggtcgacgagacg 219
>MGNS010AB01F.B mgns010aB01f.b LENGTH:330bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 330
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 152 gcgacggcaagga 164
|||||||||||||
Sbjct: 120 gcgacggcaagga 132
>MGNS008BG10F.B mgns008bG10f.b LENGTH:436bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 436
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 451 aagaccgccgcgc 463
|||||||||||||
Sbjct: 200 aagaccgccgcgc 188
>MGNS007DF08F.B mgns007dF08f.b LENGTH:494bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 494
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 51 cccctggttcggt 63
|||||||||||||
Sbjct: 291 cccctggttcggt 279
>MGNS002DC05F.B mgns002dC05f.b LENGTH:366bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 366
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 20 acatcgatgacca 32
|||||||||||||
Sbjct: 218 acatcgatgacca 230
>MGNS001AF06F.B mgns001aF06f.b LENGTH:368bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 368
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 123 ggaacaggagcgc 135
|||||||||||||
Sbjct: 169 ggaacaggagcgc 181
>CL3CT3CN3 cl3ct3cn3 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:2;
ESTS:mgns001aA05f.b,mgns009aD0
Length = 538
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 286 gctgagtgggagc 298
|||||||||||||
Sbjct: 284 gctgagtgggagc 272
>CL270CT282CN289 cl270ct282cn289 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns011bG01f.b,mgns
Length = 559
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 215 agcgcctccgagg 227
|||||||||||||
Sbjct: 518 agcgcctccgagg 506
>CL263CT275CN281 cl263ct275cn281 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns010bF01f.b,mgns0
Length = 541
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 27 tgaccagaccaag 39
|||||||||||||
Sbjct: 451 tgaccagaccaag 463
>CL22CT28CN31 cl22ct28cn31 COVERAGE:0.94; CRAWID: 1; TOTAL_ESTS:4;
ESTS:mgns001aD11f.b,mgns002
Length = 474
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 455 ccgccgcgccttc 467
|||||||||||||
Sbjct: 148 ccgccgcgccttc 160
>CL201CT212CN218 cl201ct212cn218 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:6; ESTS:mgns007bE06f.b,mgns
Length = 593
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 72 catgcttctcact 84
|||||||||||||
Sbjct: 114 catgcttctcact 126
Database: /phillip/Ncr/MgrN_SP
Posted date: Feb 18, 2002 5:07 PM
Number of letters in database: 496,015
Number of sequences in database: 1206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 201
Number of Sequences: 1206
Number of extensions: 201
Number of successful extensions: 63
Number of sequences better than 10.0: 13
length of query: 669
length of database: 496,015
effective HSP length: 14
effective length of query: 655
effective length of database: 479,131
effective search space: 313830805
effective search space used: 313830805
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)