The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FgrNT3_10_B23.seq Fgr_10_B23 LENGTH:613bp ; DIRECTION:5
; CLONE:Fgr_10_B23 ; CLONELIB: n/a ; TISSU
(613 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
907,641 sequences; 284,333,007 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_594613.1| (NC_003424) small nuclear ribonucleoprotei... 105 4e-22
ref|NP_524774.1| (NM_080035) small nuclear ribonucleoprotei... 96 1e-19
ref|NP_008869.1| (NM_006938) small nuclear ribonucleoprotei... 94 4e-19
gb|AAL48981.1| (AY071359) RE39488p [Drosophila melanogaster] 93 1e-18
ref|NP_187416.1| (NM_111638) putative small nuclear ribonuc... 87 1e-16
ref|NP_192193.1| (NM_116518) small nuclear riboprotein Sm-D... 87 1e-16
ref|NP_495306.1| (NM_062905) Autoantigen small ribonucleopr... 84 1e-15
ref|NP_011588.1| (NC_001139) Homolog of human core snRNP pr... 62 1e-09
gb|AAG00461.1|AF280393_1 (AF280393) Sm-D1 [Trypanosoma brucei] 60 2e-08
emb|CAB95310.1| (AL359781) possible small nuclear riboprote... 55 6e-07
ref|NP_004166.1| (NM_004175) small nuclear ribonucleoprotei... 40 0.016
emb|CAC28701.1| (AL513444) probable small nuclear ribonucle... 40 0.021
ref|XP_079902.1| (XM_079902) Small ribonucleoprotein Sm D3 ... 39 0.027
ref|NP_563682.1| (NM_100215) expressed protein [Arabidopsis... 39 0.046
ref|NP_586665.1| (NC_003242) SMALL NUCLEAR RIBONUCLEOPROTEI... 39 0.046
gb|AAC72111.1| (AC005278) Similar to gb|U85207 snRNP core S... 39 0.046
gb|AAH11510.1|AAH11510 (BC011510) Similar to small nuclear ... 38 0.060
gb|AAF49929.1| (AE003541) CG10418 gene product [Drosophila ... 38 0.060
ref|NP_177757.1| (NM_106280) small nuclear ribonucleoprotei... 38 0.060
gb|AAG31431.1|AF204154_1 (AF204154) snRNP core protein SMX5... 38 0.060
ref|NP_597593.1| (NC_003230) similarity to SMALL NUCLEAR RI... 38 0.078
ref|NP_009527.1| (NC_001134) Like Sm-D1 protein; Lsm2p [Sac... 37 0.10
ref|NP_503027.1| (NM_070626) small nuclear ribonuclearprote... 37 0.10
pdb|1D3B|E Chain E, Crystal Structure Of The D3b Subcomplex... 37 0.13
sp|Q17348|SMD3_CAEEL SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3 ... 37 0.13
ref|NP_085100.1| (NM_030597) snRNP core protein SMX5 [Mus m... 37 0.17
gb|AAG31434.1|AF204157_1 (AF204157) snRNP core protein SMX5... 37 0.17
ref|NP_595699.1| (NC_003423) probable small nuclear ribonuc... 37 0.17
ref|NP_067000.1| (NM_021177) U6 snRNA-associated Sm-like pr... 37 0.17
ref|XP_090288.1| (XM_090288) hypothetical protein XP_090288... 36 0.30
ref|NP_564119.1| (NM_101909) expressed protein [Arabidopsis... 35 0.39
ref|NP_116270.1| (NM_032881) U7 snRNP-specific Sm-like prot... 34 1.1
gb|AAF52939.2| (AE003628) CG17768 gene product [Drosophila ... 33 1.5
gb|AAH24543.1| (BC024543) Similar to U7 snRNP-specific Sm-l... 33 1.9
gb|AAL47166.1|AF449459_1 (AF449459) diamine oxidase [Brassi... 33 2.5
pir||T42389 versican precursor, splice form V0 - bovine >gi... 33 2.5
gb|AAC24359.1| (AF060457) versican V1 splice-variant precur... 33 2.5
ref|NP_506348.1| (NM_073947) Yeast hypothetical 11.2 KD pro... 33 2.5
sp|P13207|ET3_RAT Endothelin-3 precursor (ET-3) >gi|92211|p... 32 4.3
ref|NP_597105.1| (NC_003238) U6 snRNA-ASSOCIATED RIBONUCLEO... 32 4.3
ref|XP_062698.1| (XM_062698) similar to plakophilin 2a [Hom... 32 5.6
gb|AAG00459.1|AF280391_1 (AF280391) Sm-F [Trypanosoma brucei] 31 7.3
ref|NP_013248.1| (NC_001144) involved in snRNP biogenesis a... 31 7.3
ref|NP_031929.1| (NM_007903) endothelin 3 [Mus musculus] >g... 31 9.6
>ref|NP_594613.1| (NC_003424) small nuclear ribonucleoprotein smd1
[Schizosaccharomyces pombe]
sp|O42661|SMD1_SCHPO Probable small nuclear ribonucleoprotein Sm D1 (snRNP core protein
D1) (Sm-D1)
pir||T38440 small nuclear ribonucleoprotein smd1 - fission yeast
(Schizosaccharomyces pombe)
emb|CAA15826.1| (AL009227) small nuclear ribonucleoprotein smd1
[Schizosaccharomyces pombe]
Length = 117
Score = 105 bits (261), Expect = 4e-22
Identities = 48/68 (70%), Positives = 61/68 (89%)
Frame = -2
Query: 525 SGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRGSTIRYFILPDSLPLDTLL 346
+GTI+HGTI+SV QMNT L+ VKMT+KG+EP+ +ET++IRG+ IRY+ILPDSLPLDTLL
Sbjct: 21 NGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSIRGNNIRYYILPDSLPLDTLL 80
Query: 345 IDDAPKPK 322
IDD+ KPK
Sbjct: 81 IDDSTKPK 88
>ref|NP_524774.1| (NM_080035) small nuclear ribonucleoprotein at 69D [Drosophila
melanogaster]
gb|AAF49893.1| (AE003540) CG10753 gene product [Drosophila melanogaster]
Length = 124
Score = 96.3 bits (238), Expect(2) = 1e-19
Identities = 45/68 (66%), Positives = 57/68 (83%)
Frame = -2
Query: 525 SGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRGSTIRYFILPDSLPLDTLL 346
+GT IHGTI+ V MNT L++V+MTIK ++P+ LET++IRG+ IRYFILPDSLPL+TLL
Sbjct: 21 NGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGNNIRYFILPDSLPLETLL 80
Query: 345 IDDAPKPK 322
IDD PK K
Sbjct: 81 IDDTPKSK 88
Score = 21.6 bits (44), Expect(2) = 1e-19
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3
Query: 611 VTIELKNGT 585
VTIELKNGT
Sbjct: 15 VTIELKNGT 23
>ref|NP_008869.1| (NM_006938) small nuclear ribonucleoprotein D1 polypeptide (16kD)
[Homo sapiens]
ref|NP_033252.1| (NM_009226) small nuclear ribonucleoprotein D1 [Mus musculus]
sp|P13641|SMD1_HUMAN SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1 (SNRNP CORE PROTEIN D1)
(SM-D1) (SM-D AUTOANTIGEN)
pir||A27668 Sm-D ribonucleoprotein autoantigen - human
pdb|1B34|A Chain A, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain
gb|AAA36620.1| (J03798) small nuclear riboprotein Sm-D [Homo sapiens]
gb|AAA96493.1| (M58558) Sm-D autoantigen [Mus musculus]
gb|AAH01721.1|AAH01721 (BC001721) small nuclear ribonucleoprotein D1 polypeptide (16kD)
[Homo sapiens]
dbj|BAB24092.1| (AK005517) data source:MGD, source key:MGI:98344,
evidence:ISS~putative~small nuclear ribonucleoprotein D1
[Mus musculus]
dbj|BAB25178.1| (AK007674) data source:MGD, source key:MGI:98344,
evidence:ISS~putative~small nuclear ribonucleoprotein D1
[Mus musculus]
dbj|BAB27628.1| (AK011455) data source:MGD, source key:MGI:98344,
evidence:ISS~putative~small nuclear ribonucleoprotein D1
[Mus musculus]
dbj|BAB28635.1| (AK013075) data source:MGD, source key:MGI:98344,
evidence:ISS~putative~small nuclear ribonucleoprotein D1
[Mus musculus]
gb|AAH24875.1| (BC024875) small nuclear ribonucleoprotein D1 polypeptide (16kD)
[Mus musculus]
Length = 119
Score = 94.4 bits (233), Expect(2) = 4e-19
Identities = 44/69 (63%), Positives = 56/69 (80%)
Frame = -2
Query: 525 SGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRGSTIRYFILPDSLPLDTLL 346
+GT +HGTI+ V MNT L+ VKMT+K +EP+ LET++IRG+ IRYFILPDSLPLDTLL
Sbjct: 21 NGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLL 80
Query: 345 IDDAPKPKN 319
+D PK K+
Sbjct: 81 VDVEPKVKS 89
Score = 21.6 bits (44), Expect(2) = 4e-19
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3
Query: 611 VTIELKNGT 585
VTIELKNGT
Sbjct: 15 VTIELKNGT 23
>gb|AAL48981.1| (AY071359) RE39488p [Drosophila melanogaster]
Length = 124
Score = 92.8 bits (229), Expect(2) = 1e-18
Identities = 44/68 (64%), Positives = 56/68 (81%)
Frame = -2
Query: 525 SGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRGSTIRYFILPDSLPLDTLL 346
+GT IHGTI+ V MNT L++V+MTIK ++ + LET++IRG+ IRYFILPDSLPL+TLL
Sbjct: 21 NGTQIHGTITGVDVAMNTHLKSVRMTIKNRDHVHLETLSIRGNNIRYFILPDSLPLETLL 80
Query: 345 IDDAPKPK 322
IDD PK K
Sbjct: 81 IDDTPKSK 88
Score = 21.6 bits (44), Expect(2) = 1e-18
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3
Query: 611 VTIELKNGT 585
VTIELKNGT
Sbjct: 15 VTIELKNGT 23
>ref|NP_187416.1| (NM_111638) putative small nuclear ribonucleoprotein (Sm-D1)
[Arabidopsis thaliana]
gb|AAF13077.1|AC009176_4 (AC009176) putative small nuclear ribonucleoprotein (Sm-D1)
[Arabidopsis thaliana]
gb|AAL47458.1| (AY069907) AT3g07590/MLP3_4 [Arabidopsis thaliana]
Length = 114
Score = 86.7 bits (213), Expect = 1e-16
Identities = 36/68 (52%), Positives = 56/68 (81%)
Frame = -2
Query: 525 SGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRGSTIRYFILPDSLPLDTLL 346
+GT++HGTI+ V MNT L+ VKM++KG+ P++L+ +++RG+ IRY+ILPDSL L+TLL
Sbjct: 21 NGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSLRGNNIRYYILPDSLNLETLL 80
Query: 345 IDDAPKPK 322
++D P+ K
Sbjct: 81 VEDTPRVK 88
>ref|NP_192193.1| (NM_116518) small nuclear riboprotein Sm-D1-like protein
[Arabidopsis thaliana]
gb|AAD15345.1| (AC004044) small nuclear riboprotein Sm-D1 [Arabidopsis thaliana]
emb|CAB77769.1| (AL161495) small nuclear riboprotein Sm-D1-like protein
[Arabidopsis thaliana]
Length = 116
Score = 86.7 bits (213), Expect = 1e-16
Identities = 37/68 (54%), Positives = 56/68 (81%)
Frame = -2
Query: 525 SGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRGSTIRYFILPDSLPLDTLL 346
+GTI+HGTI+ V MNT L+ VK+T+KG+ P++L+ +++RG+ IRY+ILPDSL L+TLL
Sbjct: 21 NGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLL 80
Query: 345 IDDAPKPK 322
++D P+ K
Sbjct: 81 VEDTPRIK 88
>ref|NP_495306.1| (NM_062905) Autoantigen small ribonucleoprotein [Caenorhabditis
elegans]
sp|Q10013|SMD1_CAEEL Probable small nuclear ribonucleoprotein Sm D1 (snRNP core protein
D1) (Sm-D1)
pir||T16952 hypothetical protein T28D9.10 - Caenorhabditis elegans
gb|AAA68313.1| (U28738) Hypothetical protein T28D9.10 [Caenorhabditis elegans]
Length = 126
Score = 83.6 bits (205), Expect = 1e-15
Identities = 40/68 (58%), Positives = 50/68 (72%)
Frame = -2
Query: 525 SGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRGSTIRYFILPDSLPLDTLL 346
+GT + GTI V MNT LR V MT+K +EP+ L+T++IRG+ IRY ILPD L LDTLL
Sbjct: 21 NGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGNNIRYIILPDPLALDTLL 80
Query: 345 IDDAPKPK 322
IDD P+ K
Sbjct: 81 IDDEPRKK 88
>ref|NP_011588.1| (NC_001139) Homolog of human core snRNP protein D1, involved in
snRNA maturation; Smd1p [Saccharomyces cerevisiae]
sp|Q02260|SMD1_YEAST Small nuclear ribonucleoprotein D1 homolog
pir||A47264 snRNP core protein D1 - yeast (Saccharomyces cerevisiae)
gb|AAA35055.1| (L04669) D1 snRNP [Saccharomyces cerevisiae]
gb|AAB25229.1| core snRNP polypeptide D1, Smd1p=SMD1 product [Saccharomyces
cerevisiae=yeast, Peptide, 146 aa]
emb|CAA97076.1| (Z72858) ORF YGR074w [Saccharomyces cerevisiae]
Length = 146
Score = 62.0 bits (149), Expect(2) = 1e-09
Identities = 38/89 (42%), Positives = 50/89 (55%), Gaps = 27/89 (30%)
Frame = -2
Query: 525 SGTIIHGTISSVSPQMNTALRNVKMTIK---------------------GQEPI------ 427
+GT + GT+ SVSPQMN L +VK+T+ GQ+P
Sbjct: 21 NGTTVWGTLQSVSPQMNAILTDVKLTLPQPRLNKLNSNGIAMASLYLTGGQQPTASDNIA 80
Query: 426 SLETMNIRGSTIRYFILPDSLPLDTLLID 340
SL+ +NIRG+TIR ILPDSL LD+LL+D
Sbjct: 81 SLQYINIRGNTIRQIILPDSLNLDSLLVD 109
Score = 21.6 bits (44), Expect(2) = 1e-09
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3
Query: 611 VTIELKNGT 585
VTIELKNGT
Sbjct: 15 VTIELKNGT 23
>gb|AAG00461.1|AF280393_1 (AF280393) Sm-D1 [Trypanosoma brucei]
Length = 106
Score = 59.7 bits (143), Expect = 2e-08
Identities = 31/76 (40%), Positives = 45/76 (58%)
Frame = -2
Query: 561 ELVGMQQHANSFSGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRGSTIRYF 382
+L G Q + TI+ G I+ V MNT +R+VK+T KG+ P ET + GS IRY
Sbjct: 15 QLRGTQVEIEMMNSTIVTGEITFVEANMNTYMRHVKITAKGKNPEMAETYMVCGSKIRYV 74
Query: 381 ILPDSLPLDTLLIDDA 334
ILP+++ D +L+ A
Sbjct: 75 ILPEAMNTDDVLVKAA 90
>emb|CAB95310.1| (AL359781) possible small nuclear riboprotein SM-D1 [Leishmania
major]
Length = 103
Score = 54.7 bits (130), Expect = 6e-07
Identities = 24/54 (44%), Positives = 37/54 (68%)
Frame = -2
Query: 525 SGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRGSTIRYFILPDSL 364
+ +I+ G I+ V MNT + + K+T KG+ P+ +E +RGSTIRY I+P+SL
Sbjct: 31 NASIVSGEIAYVDANMNTYMSHAKITSKGKNPVEVEEYMVRGSTIRYIIMPESL 84
>ref|NP_004166.1| (NM_004175) small nuclear ribonucleoprotein D3 polypeptide (18kD)
[Homo sapiens]
ref|NP_080371.1| (NM_026095) RIKEN cDNA 1700043E15 [Mus musculus]
ref|XP_084087.1| (XM_084087) small nuclear ribonucleoprotein D3 polypeptide (18kD)
[Homo sapiens]
sp|P43331|SMD3_HUMAN SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3 (SNRNP CORE PROTEIN D3)
(SM-D3)
gb|AAA57034.1| (U15009) Sm D3 [Homo sapiens]
gb|AAH00457.1|AAH00457 (BC000457) small nuclear ribonucleoprotein D3 polypeptide (18kD)
[Homo sapiens]
dbj|BAB23963.1| (AK005341) data source:SPTR, source key:P43331,
evidence:ISS~homolog to SMALL NUCLEAR RIBONUCLEOPROTEIN
SM D3 (SNRNP CORE PROTEIN D3) (SM-D3)~putative [Mus
musculus]
dbj|BAB24705.1| (AK006692) data source:SPTR, source key:P43331,
evidence:ISS~homolog to SMALL NUCLEAR RIBONUCLEOPROTEIN
SM D3 (SNRNP CORE PROTEIN D3) (SM-D3)~putative [Mus
musculus]
dbj|BAB31729.1| (AK019453) data source:SPTR, source key:P43331,
evidence:ISS~homolog to SMALL NUCLEAR RIBONUCLEOPROTEIN
SM D3 (SNRNP CORE PROTEIN D3) (SM-D3)~putative [Mus
musculus]
gb|AAH03150.1|AAH03150 (BC003150) small nuclear ribonucleoprotein D3 polypeptide (18kD)
[Homo sapiens]
Length = 126
Score = 40.0 bits (92), Expect = 0.016
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = -2
Query: 525 SGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRGSTIRYFILPDSL 364
+G + G + MN + N+ +T + LE + IRGS IR+ ILPD L
Sbjct: 24 TGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDML 77
>emb|CAC28701.1| (AL513444) probable small nuclear ribonucleoprotein SM D3
[Neurospora crassa]
Length = 116
Score = 39.7 bits (91), Expect = 0.021
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = -2
Query: 525 SGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRGSTIRYFILPDSL 364
SG G + MN L+++ +T + LE + IRGS +R+FI+PD L
Sbjct: 26 SGQTYRGKLIEAEDNMNVQLKDITVTARDGRVSHLEQVYIRGSHVRFFIVPDML 79
>ref|XP_079902.1| (XM_079902) Small ribonucleoprotein Sm D3 [Drosophila melanogaster]
sp|O44437|SMD3_DROME Small nuclear ribonucleoprotein SM D3 (snRNP core protein D3)
(SM-D3)
gb|AAB92621.1| (AF038598) small nuclear ribonucleoprotein Sm D3 [Drosophila
melanogaster]
gb|AAF58566.1| (AE003823) SmD3 gene product [Drosophila melanogaster]
Length = 151
Score = 39.3 bits (90), Expect = 0.027
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -2
Query: 531 SFSGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRGSTIRYFILPDSL 364
+ +G + G + MN + + +T + +LE + IRGS IR+ ILPD L
Sbjct: 22 TITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGSKIRFLILPDML 77
>ref|NP_563682.1| (NM_100215) expressed protein [Arabidopsis thaliana]
Length = 93
Score = 38.5 bits (88), Expect = 0.046
Identities = 25/74 (33%), Positives = 37/74 (49%), Gaps = 3/74 (4%)
Frame = -2
Query: 561 ELVGMQQHANSFSGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMN--IRGSTIR 388
+LVG + + I GT+ SV +N L N ++ + + P L N IRGS +R
Sbjct: 9 DLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVR 68
Query: 387 YFILP-DSLPLDTL 349
Y LP D + +D L
Sbjct: 69 YVQLPKDGVDVDLL 82
>ref|NP_586665.1| (NC_003242) SMALL NUCLEAR RIBONUCLEOPROTEIN (U1/U2 snRNP)
[Encephalitozoon cuniculi]
emb|CAD24924.1| (AL391737) SMALL NUCLEAR RIBONUCLEOPROTEIN (U1/U2 snRNP)
[Encephalitozoon cuniculi]
Length = 99
Score = 38.5 bits (88), Expect = 0.046
Identities = 25/65 (38%), Positives = 34/65 (51%)
Frame = -2
Query: 522 GTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRGSTIRYFILPDSLPLDTLLI 343
G I G I SV MN + V + + G P S T +RGS+IRY + D + LL+
Sbjct: 22 GRRIEGKIVSVDKTMNVEM--VDVVVDGA-PAS--TYTVRGSSIRYVLFRDDIDFKPLLV 76
Query: 342 DDAPK 328
DD P+
Sbjct: 77 DDRPR 81
>gb|AAC72111.1| (AC005278) Similar to gb|U85207 snRNP core Sm protein homolog Sm-X5
from Mus musculus. EST gb|AA612141 comes from this
gene. [Arabidopsis thaliana]
Length = 114
Score = 38.5 bits (88), Expect = 0.046
Identities = 25/74 (33%), Positives = 37/74 (49%), Gaps = 3/74 (4%)
Frame = -2
Query: 561 ELVGMQQHANSFSGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMN--IRGSTIR 388
+LVG + + I GT+ SV +N L N ++ + + P L N IRGS +R
Sbjct: 30 DLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVR 89
Query: 387 YFILP-DSLPLDTL 349
Y LP D + +D L
Sbjct: 90 YVQLPKDGVDVDLL 103
>gb|AAH11510.1|AAH11510 (BC011510) Similar to small nuclear ribonucleoprotein D3
polypeptide (18kD) [Mus musculus]
Length = 126
Score = 38.1 bits (87), Expect = 0.060
Identities = 18/54 (33%), Positives = 27/54 (49%)
Frame = -2
Query: 525 SGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRGSTIRYFILPDSL 364
+G + G + MN + N+ +T + LE + IRG IR+ ILPD L
Sbjct: 24 TGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGRKIRFLILPDML 77
>gb|AAF49929.1| (AE003541) CG10418 gene product [Drosophila melanogaster]
gb|AAL48484.1| (AY070862) GM14851p [Drosophila melanogaster]
Length = 95
Score = 38.1 bits (87), Expect = 0.060
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = -2
Query: 558 LVGMQQHANSFSGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMN--IRGSTIRY 385
LVG + + I GT+ SV +N L ++ +T + P L N IRGS +RY
Sbjct: 10 LVGKEVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRY 69
Query: 384 FILPDSLPLDTLLIDDAPK 328
LP +DT L+ DA +
Sbjct: 70 VQLPGD-EVDTQLLQDAAR 87
>ref|NP_177757.1| (NM_106280) small nuclear ribonucleoprotein, putative [Arabidopsis
thaliana]
gb|AAF16670.1|AC012394_19 (AC012394) putative small nuclear ribonucleoprotein Sm D3;
79504-78381 [Arabidopsis thaliana]
gb|AAF17631.1|AC009978_7 (AC009978) T23E18.23 [Arabidopsis thaliana]
gb|AAK55732.1|AF380651_1 (AF380651) At1g76300/F15M4_20 [Arabidopsis thaliana]
gb|AAL06810.1| (AY054149) At1g76300/F15M4_20 [Arabidopsis thaliana]
Length = 128
Score = 38.1 bits (87), Expect = 0.060
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = -2
Query: 525 SGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRGSTIRYFILPDSLPLDTLL 346
SG + G++ N L N+ T K + LE + IRGS +R+ ++PD L +
Sbjct: 26 SGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSLVRFLVIPDMLKNAPMF 85
Query: 345 IDDAPKPKN 319
D K K+
Sbjct: 86 KDVRGKGKS 94
>gb|AAG31431.1|AF204154_1 (AF204154) snRNP core protein SMX5b [Mus musculus]
gb|AAG31432.1|AF204155_1 (AF204155) snRNP core protein SMX5b [Mus musculus]
Length = 78
Score = 38.1 bits (87), Expect = 0.060
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = -2
Query: 525 SGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMN--IRGSTIRYFILPDSLPLDT 352
+G I GT+ SV +N L ++ +T + P L N IRGS +RY LP +DT
Sbjct: 4 AGLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPAD-EVDT 62
Query: 351 LLIDDAPK 328
L+ DA +
Sbjct: 63 QLLQDAAR 70
>ref|NP_597593.1| (NC_003230) similarity to SMALL NUCLEAR RIBONUCLEOPROTEIN D3
[Encephalitozoon cuniculi]
emb|CAD26228.1| (AL590443) similarity to SMALL NUCLEAR RIBONUCLEOPROTEIN D3
[Encephalitozoon cuniculi]
Length = 87
Score = 37.7 bits (86), Expect = 0.078
Identities = 24/72 (33%), Positives = 36/72 (49%)
Frame = -2
Query: 579 PKPLSLELVGMQQHANSFSGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRG 400
P L E G + SG + G + V MN L +V +T +S + + IRG
Sbjct: 6 PLKLLHESQGFIVTVETSSGDMYRGRVREVDDYMNLVLDDVVVT-SNNSSLSRKEVLIRG 64
Query: 399 STIRYFILPDSL 364
S+IR+F+LP +L
Sbjct: 65 SSIRFFVLPPAL 76
>ref|NP_009527.1| (NC_001134) Like Sm-D1 protein; Lsm2p [Saccharomyces cerevisiae]
sp|P38203|LSM2_YEAST U6 snRNA-associated Sm-like protein LSm2 (Small nuclear
ribonucleoprotein D homolog SNP3)
pir||S45760 probable snRNP-related protein YBL026w - yeast (Saccharomyces
cerevisiae)
emb|CAA84845.1| (Z35787) ORF YBL026w [Saccharomyces cerevisiae]
emb|CAA54505.1| (X77291) encodes a 95 aa peptide that shows homology with the yeast
and human Sm-D1core polypeptide of small nuclear
ribonucleoprotein patricles (snRNP). It might be a
possible candidate for a yeast Sm-E homolog
[Saccharomyces cerevisiae]
Length = 95
Score = 37.4 bits (85), Expect = 0.10
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = -2
Query: 513 IHGTISSVSPQMNTALRNVKMTIKGQEPI--SLETMNIRGSTIRYFILPDSLPLDTLLID 340
I GT+ SV +N L N+ T + + P S+ + IRGST+RY L ++ +DT L+
Sbjct: 25 IKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNIFIRGSTVRYVYLNKNM-VDTNLLQ 83
Query: 339 DAPK 328
DA +
Sbjct: 84 DATR 87
>ref|NP_503027.1| (NM_070626) small nuclear ribonuclearprotein SM D3 [Caenorhabditis
elegans]
pir||T31498 hypothetical protein Y116A8C.42 - Caenorhabditis elegans
emb|CAB55132.1| (AL117204) predicted using Genefinder~contains similarity to Pfam
domain: PF01423 (Sm protein), Score=46.2,
E-value=2.3e-10, N=1~cDNA EST EMBL:T00187 comes from
this gene; cDNA EST yk103h3.3 comes from this gene~cDNA
EST yk103h3.5 comes from this gene;>
Length = 136
Score = 37.4 bits (85), Expect = 0.10
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = -2
Query: 561 ELVGMQQHANSFSGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRGSTIRYF 382
E G + +G + G +S MN L +T + L+ + IRG+ IR+
Sbjct: 13 EAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKIRFM 72
Query: 381 ILPDSL 364
ILPD L
Sbjct: 73 ILPDML 78
>pdb|1D3B|E Chain E, Crystal Structure Of The D3b Subcomplex Of The Human Core
Snrnp Domain At 2.0a Resolution
pdb|1D3B|G Chain G, Crystal Structure Of The D3b Subcomplex Of The Human Core
Snrnp Domain At 2.0a Resolution
pdb|1D3B|I Chain I, Crystal Structure Of The D3b Subcomplex Of The Human Core
Snrnp Domain At 2.0a Resolution
pdb|1D3B|A Chain A, Crystal Structure Of The D3b Subcomplex Of The Human Core
Snrnp Domain At 2.0a Resolution
pdb|1D3B|C Chain C, Crystal Structure Of The D3b Subcomplex Of The Human Core
Snrnp Domain At 2.0a Resolution
pdb|1D3B|K Chain K, Crystal Structure Of The D3b Subcomplex Of The Human Core
Snrnp Domain At 2.0a Resolution
Length = 75
Score = 37.0 bits (84), Expect = 0.13
Identities = 17/52 (32%), Positives = 26/52 (49%)
Frame = -2
Query: 525 SGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRGSTIRYFILPD 370
+G + G + MN + N+ +T + LE + IRG IR+ ILPD
Sbjct: 24 TGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGCKIRFLILPD 75
>sp|Q17348|SMD3_CAEEL SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3 (SNRNP CORE PROTEIN D3)
(SM-D3)
gb|AAA65451.1| (U23937) small nuclear ribonucleoprotein [Caenorhabditis elegans]
Length = 71
Score = 37.0 bits (84), Expect = 0.13
Identities = 18/54 (33%), Positives = 27/54 (49%)
Frame = -2
Query: 525 SGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRGSTIRYFILPDSL 364
+G + G +S MN L +T + L+ + IRG+ IR+ ILPD L
Sbjct: 11 TGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKIRFMILPDML 64
>ref|NP_085100.1| (NM_030597) snRNP core protein SMX5 [Mus musculus]
gb|AAB72038.1| (U85207) snRNP core Sm protein homolog Sm-X5 [Mus musculus]
gb|AAC84150.1| (AF109905) smRNP [Mus musculus]
gb|AAC84171.1| (AF109906) smRNP [Mus musculus]
gb|AAG31423.1|AF204146_1 (AF204146) snRNP core protein SMX5 [Mus musculus]
gb|AAG31424.1|AF204147_1 (AF204147) snRNP core protein SMX5 [Mus musculus]
gb|AAG31425.1|AF204148_1 (AF204148) snRNP core protein SMX5 [Mus musculus]
gb|AAG31426.1|AF204149_1 (AF204149) snRNP core protein SMX5 [Mus musculus]
gb|AAG31427.1|AF204150_1 (AF204150) snRNP core protein SMX5 [Mus musculus]
gb|AAG31428.1|AF204151_1 (AF204151) snRNP core protein SMX5 [Mus musculus]
gb|AAG31429.1|AF204152_1 (AF204152) snRNP core protein SMX5 [Mus musculus]
gb|AAL14449.1|AF397035_2 (AF397035) G7b alternative form [Mus musculus]
gb|AAL14457.1|AF397036_2 (AF397036) G7b alternative form [Mus musculus]
Length = 131
Score = 36.6 bits (83), Expect = 0.17
Identities = 24/64 (37%), Positives = 34/64 (52%), Gaps = 2/64 (3%)
Frame = -2
Query: 513 IHGTISSVSPQMNTALRNVKMTIKGQEPISLETMN--IRGSTIRYFILPDSLPLDTLLID 340
I GT+ SV +N L ++ +T + P L N IRGS +RY LP +DT L+
Sbjct: 61 ICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPAD-EVDTQLLQ 119
Query: 339 DAPK 328
DA +
Sbjct: 120 DAAR 123
>gb|AAG31434.1|AF204157_1 (AF204157) snRNP core protein SMX5d [Mus musculus]
Length = 119
Score = 36.6 bits (83), Expect = 0.17
Identities = 24/64 (37%), Positives = 34/64 (52%), Gaps = 2/64 (3%)
Frame = -2
Query: 513 IHGTISSVSPQMNTALRNVKMTIKGQEPISLETMN--IRGSTIRYFILPDSLPLDTLLID 340
I GT+ SV +N L ++ +T + P L N IRGS +RY LP +DT L+
Sbjct: 49 ICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPAD-EVDTQLLQ 107
Query: 339 DAPK 328
DA +
Sbjct: 108 DAAR 111
>ref|NP_595699.1| (NC_003423) probable small nuclear ribonucleoprotein Sm D3
[Schizosaccharomyces pombe]
sp|Q9UUC6|SMD3_SCHPO Probable small nuclear ribonucleoprotein Sm D3 (snRNP core protein
D3) (Sm-D3)
pir||T39805 probable small nuclear ribonucleoprotein Sm D3 - fission yeast
(Schizosaccharomyces pombe)
emb|CAB52041.1| (AL109731) probable small nuclear ribonucleoprotein Sm D3
[Schizosaccharomyces pombe]
Length = 97
Score = 36.6 bits (83), Expect = 0.17
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = -2
Query: 525 SGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRGSTIRYFILPDSL 364
+G+ G + MN +R++ +T + L+ + IRGS IR+ I+PD L
Sbjct: 22 NGSTYRGKLIEAEDNMNCQMRDISVTARDGRVSHLDQVYIRGSHIRFLIVPDML 75
>ref|NP_067000.1| (NM_021177) U6 snRNA-associated Sm-like protein [Homo sapiens]
sp|Q9Y333|LSM2_HUMAN U6 snRNA-associated Sm-like protein LSm2 (Small nuclear ribonuclear
protein D homolog) (G7b)
gb|AAB72037.1| (U85207) snRNP core Sm protein homolog Sm-X5 [Mus musculus]
gb|AAD21818.1| (AF134726) snRNP [Homo sapiens]
emb|CAB52190.1| (AJ245416) G7b protein [Homo sapiens]
gb|AAD56226.1|AF182288_1 (AF182288) U6 snRNA-associated Sm-like protein LSm2 [Homo sapiens]
gb|AAG33023.1| (AF196468) SMX5-like protein [Homo sapiens]
gb|AAG49438.1|AF136977_1 (AF136977) snRNP core SM-like protein SM-x5 [Homo sapiens]
gb|AAH09192.1|AAH09192 (BC009192) U6 snRNA-associated Sm-like protein [Homo sapiens]
dbj|BAB63302.1| (AP000503) small nuclear ribonuclear protein D homolog [Homo
sapiens]
gb|AAH14288.1|AAH14288 (BC014288) Similar to U6 snRNA-associated Sm-like protein [Mus
musculus]
gb|AAL14450.1|AF397035_3 (AF397035) small ribonuclear protein G7b [Mus musculus]
gb|AAL14458.1|AF397036_3 (AF397036) small ribonuclear protein G7b [Mus musculus]
Length = 95
Score = 36.6 bits (83), Expect = 0.17
Identities = 24/64 (37%), Positives = 34/64 (52%), Gaps = 2/64 (3%)
Frame = -2
Query: 513 IHGTISSVSPQMNTALRNVKMTIKGQEPISLETMN--IRGSTIRYFILPDSLPLDTLLID 340
I GT+ SV +N L ++ +T + P L N IRGS +RY LP +DT L+
Sbjct: 25 ICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPAD-EVDTQLLQ 83
Query: 339 DAPK 328
DA +
Sbjct: 84 DAAR 87
>ref|XP_090288.1| (XM_090288) hypothetical protein XP_090288 [Homo sapiens]
Length = 510
Score = 35.8 bits (81), Expect = 0.30
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -2
Query: 480 MNTALRNVKMTIKGQEPISLETMNIRGSTI 391
MNT L+ VKMT+K +E + LET++IR + I
Sbjct: 1 MNTHLKAVKMTLKNRETVQLETLSIRRNNI 30
>ref|NP_564119.1| (NM_101909) expressed protein [Arabidopsis thaliana]
gb|AAF80609.1|AC069251_2 (AC069251) F2D10.7 [Arabidopsis thaliana]
gb|AAL06539.1|AF412086_1 (AF412086) At1g20580/F2D10_6 [Arabidopsis thaliana]
Length = 131
Score = 35.4 bits (80), Expect = 0.39
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -2
Query: 525 SGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRGSTIRYFILPDSL 364
SG + G++ N L ++ T K + LE + IRGS +R+ ++PD L
Sbjct: 26 SGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQLEHVFIRGSKVRFMVIPDIL 79
>ref|NP_116270.1| (NM_032881) U7 snRNP-specific Sm-like protein LSM10; U7
snRNA-associated Sm-like protein LSM10 [Homo sapiens]
gb|AAH07623.1|AAH07623 (BC007623) Unknown (protein for MGC:15749) [Homo sapiens]
gb|AAL07689.1|AF394685_1 (AF394685) U7 snRNA-associated Sm-like protein LSM10 [Homo sapiens]
Length = 123
Score = 33.9 bits (76), Expect = 1.1
Identities = 15/58 (25%), Positives = 29/58 (49%)
Frame = -2
Query: 519 TIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRGSTIRYFILPDSLPLDTLL 346
++ HG I +V MN L V T + + L+ + + G +RY +PD + + + +
Sbjct: 37 SVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDLFVTGRNVRYVHIPDDVNITSTI 94
>gb|AAF52939.2| (AE003628) CG17768 gene product [Drosophila melanogaster]
Length = 154
Score = 33.5 bits (75), Expect = 1.5
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Frame = -2
Query: 585 AQPKPLSLELVGMQQHANSFSGTIIHGTISSVSPQMNTALRNVKMTIK-GQEPISLETMN 409
AQ P+ +EL +G +G + S MN LR+V T K G +
Sbjct: 10 AQSHPMLVELK---------NGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECY 60
Query: 408 IRGSTIRYFILPDSLPLDTLLIDDAPKPKN 319
IRGSTI+Y +PD + +D + D K +N
Sbjct: 61 IRGSTIKYLRIPDEV-IDMVKEDAQAKSRN 89
>gb|AAH24543.1| (BC024543) Similar to U7 snRNP-specific Sm-like protein LSM10 [Mus
musculus]
Length = 122
Score = 33.1 bits (74), Expect = 1.9
Identities = 15/54 (27%), Positives = 27/54 (49%)
Frame = -2
Query: 519 TIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRGSTIRYFILPDSLPL 358
++ G I +V MN L NV T + + L+ + + G +RY +PD + +
Sbjct: 37 SVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTGRNVRYVHIPDGVDI 90
>gb|AAL47166.1|AF449459_1 (AF449459) diamine oxidase [Brassica juncea]
Length = 649
Score = 32.7 bits (73), Expect = 2.5
Identities = 22/72 (30%), Positives = 34/72 (46%), Gaps = 11/72 (15%)
Frame = -2
Query: 519 TIIHGTISSVSPQMNTALRNVKMTIK------GQEPISLETMNIR-----GSTIRYFILP 373
T +H SS T +R T G EP+ L +N + G+T+ Y ++P
Sbjct: 481 TDVHNKTSSPRKSYWTVVRETAKTEADGRVRLGSEPVELLIVNPQKKTKIGNTVGYRLIP 540
Query: 372 DSLPLDTLLIDD 337
+ LP+ +LL DD
Sbjct: 541 EHLPVTSLLTDD 552
>pir||T42389 versican precursor, splice form V0 - bovine
gb|AAC24358.1| (AF060456) versican V0 splice-variant precursor [Bos taurus]
Length = 3381
Score = 32.7 bits (73), Expect = 2.5
Identities = 27/85 (31%), Positives = 37/85 (42%), Gaps = 1/85 (1%)
Frame = -2
Query: 573 PLSLEL-VGMQQHANSFSGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRGS 397
PLS+ L G +H+ + + T +S P + L N++ T K P S E
Sbjct: 2820 PLSIHLGSGDSEHSEDLQPSALPSTDASTPPVSSGELANIEATFK---PSSEEDF----- 2871
Query: 396 TIRYFILPDSLPLDTLLIDDAPKPK 322
Y P SLP DT +D KPK
Sbjct: 2872 ---YITEPPSLPPDTEPSEDESKPK 2893
>gb|AAC24359.1| (AF060457) versican V1 splice-variant precursor [Bos taurus]
Length = 2394
Score = 32.7 bits (73), Expect = 2.5
Identities = 27/85 (31%), Positives = 37/85 (42%), Gaps = 1/85 (1%)
Frame = -2
Query: 573 PLSLEL-VGMQQHANSFSGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRGS 397
PLS+ L G +H+ + + T +S P + L N++ T K P S E
Sbjct: 1833 PLSIHLGSGDSEHSEDLQPSALPSTDASTPPVSSGELANIEATFK---PSSEEDF----- 1884
Query: 396 TIRYFILPDSLPLDTLLIDDAPKPK 322
Y P SLP DT +D KPK
Sbjct: 1885 ---YITEPPSLPPDTEPSEDESKPK 1906
>ref|NP_506348.1| (NM_073947) Yeast hypothetical 11.2 KD protein like [Caenorhabditis
elegans]
pir||T24808 hypothetical protein T10G3.6 - Caenorhabditis elegans
emb|CAB03328.2| (Z81118) Similarity to Yeast hypothetical 11.2 KD protein
(SW:P38203), contains similarity to Pfam domain: PF01423
(Sm protein), Score=76.0, E-value=2.5e-19, N=1~cDNA EST
yk144a6.3 comes from this gene~cDNA EST yk538f10.3 comes
from this gene~cDNA EST >
Length = 103
Score = 32.7 bits (73), Expect = 2.5
Identities = 22/62 (35%), Positives = 36/62 (57%), Gaps = 2/62 (3%)
Frame = -2
Query: 513 IHGTISSVSPQMNTALRNVKMTIKGQEP--ISLETMNIRGSTIRYFILPDSLPLDTLLID 340
I GT+ SV +N L ++ ++ + P +S++ IRGS +RY LP S +DT L+
Sbjct: 31 ICGTLHSVDQYLNMKLTDITVSDPERFPHMVSVKNCFIRGSVVRYVQLP-SDQVDTQLLA 89
Query: 339 DA 334
D+
Sbjct: 90 DS 91
>sp|P13207|ET3_RAT Endothelin-3 precursor (ET-3)
pir||JC1102 endothelin 3 precursor - rat
gb|AAB22502.1| (S39779) preproendothelin-3; preproET-3 [Rattus sp.]
Length = 167
Score = 32.0 bits (71), Expect = 4.3
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -3
Query: 197 NAGRDRRPGEKGEKEDGSVKAHH 129
NAG++R PG G++E+ V AHH
Sbjct: 26 NAGQERGPGRSGDQEEKRVPAHH 48
>ref|NP_597105.1| (NC_003238) U6 snRNA-ASSOCIATED RIBONUCLEOPROTEIN [Encephalitozoon
cuniculi]
emb|CAD27153.1| (AL590451) U6 snRNA-ASSOCIATED RIBONUCLEOPROTEIN [Encephalitozoon
cuniculi]
Length = 94
Score = 32.0 bits (71), Expect = 4.3
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = -2
Query: 525 SGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRGSTIRYFIL 376
+G + G + + P +N +L +V++ S+ +IRGS+I+Y ++
Sbjct: 21 AGVYVSGRLGGIDPYLNLSLLDVRILSSHPGLSSISVCSIRGSSIKYILV 70
>ref|XP_062698.1| (XM_062698) similar to plakophilin 2a [Homo sapiens]
Length = 215
Score = 31.6 bits (70), Expect = 5.6
Identities = 23/81 (28%), Positives = 40/81 (48%), Gaps = 1/81 (1%)
Frame = -2
Query: 579 PKPLSL-ELVGMQQHANSFSGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIR 403
P P S+ + V +++ + ++H + SV N LRN+ + Q I+ ET+
Sbjct: 83 PMPTSVAQTVVQKENGLQHTRKMVHVSDPSVKKTANLLLRNLSQNLSLQNKIAKETLPSL 142
Query: 402 GSTIRYFILPDSLPLDTLLID 340
S I+PD++P LLI+
Sbjct: 143 VS-----IIPDTVPSTDLLIE 158
>gb|AAG00459.1|AF280391_1 (AF280391) Sm-F [Trypanosoma brucei]
Length = 75
Score = 31.2 bits (69), Expect = 7.3
Identities = 20/65 (30%), Positives = 28/65 (42%)
Frame = -2
Query: 579 PKPLSLELVGMQQHANSFSGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRG 400
P LVG H S G + GT+ S P MN LR+ K ++ L M +R
Sbjct: 6 PAAFLASLVGNTVHVKSKWGPVYVGTLVSCDPYMNLQLRDA--VEKAKQETELGDMLLRN 63
Query: 399 STIRY 385
+ + Y
Sbjct: 64 NNVLY 68
>ref|NP_013248.1| (NC_001144) involved in snRNP biogenesis and pre-mRNA splicing;
Smd3p [Saccharomyces cerevisiae]
sp|P43321|SMD3_YEAST SMALL NUCLEAR RIBONUCLEOPROTEIN D3 HOMOLOG
pir||S29093 SMD3 protein - yeast (Saccharomyces cerevisiae)
gb|AAB32821.1| Smd3 protein, snRNP protein Smd3=D core small nuclear
ribonucleoprotein [Saccharomyces cerevisiae, BJ3434,
Peptide, 101 aa]
gb|AAB82381.1| (U53879) Smd3p: Small nuclear ribonucleoprotein D3 homolog
[Saccharomyces cerevisiae]
emb|CAA97719.1| (Z73319) ORF YLR147c [Saccharomyces cerevisiae]
Length = 101
Score = 31.2 bits (69), Expect = 7.3
Identities = 23/87 (26%), Positives = 38/87 (43%)
Frame = -2
Query: 585 AQPKPLSLELVGMQQHANSFSGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNI 406
AQ +SLEL +G G + MN LR+V T ++ + +
Sbjct: 14 AQGHIVSLELT---------TGATYRGKLVESEDSMNVQLRDVIATEPQGAVTHMDQIFV 64
Query: 405 RGSTIRYFILPDSLPLDTLLIDDAPKP 325
RGS I++ ++PD L L ++ +P
Sbjct: 65 RGSQIKFIVVPDLLKNAPLFKKNSSRP 91
>ref|NP_031929.1| (NM_007903) endothelin 3 [Mus musculus]
sp|P48299|ET3_MOUSE Endothelin-3 precursor (ET-3)
pir||I49351 endothelin 3 precursor - mouse
gb|AAB60509.1| (U32330) prepro-endothelin-3 [Mus musculus]
Length = 214
Score = 30.8 bits (68), Expect = 9.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 197 NAGRDRRPGEKGEKEDGSVKAHH 129
+AG++R PG G++ED + AHH
Sbjct: 70 SAGQERAPGRSGKQEDKGLPAHH 92
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: Mar 29, 2002 2:16 AM
Number of letters in database: 284,333,007
Number of sequences in database: 907,641
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 237,962,280
Number of Sequences: 907641
Number of extensions: 4018976
Number of successful extensions: 16495
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 15976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16487
length of database: 284,333,007
effective HSP length: 114
effective length of database: 180,861,933
effective search space used: 16096712037
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)