BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNT3/stackpack/blast_Mgr-N/FgrNT3_10_B23.seq
(613 letters)
Database: /phillip/Ncr/MgrN_SP
1206 sequences; 496,015 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGNS001BG01F.B mgns001bG01f.b LENGTH:563bp ; DIRECTION:0 ; CLONE... 36 0.004
MGNS011BG09F.B mgns011bG09f.b LENGTH:354bp ; DIRECTION:0 ; CLONE... 34 0.015
MGNS011AE01F.B mgns011aE01f.b LENGTH:405bp ; DIRECTION:0 ; CLONE... 34 0.015
MGNS012AG03F.B mgns012aG03f.b LENGTH:143bp ; DIRECTION:0 ; CLONE... 32 0.058
MGNS007AC06F.B mgns007aC06f.b LENGTH:337bp ; DIRECTION:0 ; CLONE... 32 0.058
MGNS010CD02F.B mgns010cD02f.b LENGTH:387bp ; DIRECTION:0 ; CLONE... 30 0.23
MGNS007DC01F.B mgns007dC01f.b LENGTH:275bp ; DIRECTION:0 ; CLONE... 30 0.23
MGNS002CG05F.B mgns002cG05f.b LENGTH:424bp ; DIRECTION:0 ; CLONE... 30 0.23
CL35CT41CN44 cl35ct41cn44 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:4... 30 0.23
CL237CT249CN255 cl237ct249cn255 COVERAGE:0.99; CRAWID: 1; TOTAL_... 30 0.23
MGNS008AC02F.B mgns008aC02f.b LENGTH:425bp ; DIRECTION:0 ; CLONE... 28 0.90
MGNS007CD12F.B mgns007cD12f.b LENGTH:524bp ; DIRECTION:0 ; CLONE... 28 0.90
MGNS002AB01F.B mgns002aB01f.b LENGTH:449bp ; DIRECTION:0 ; CLONE... 28 0.90
CL74CT83CN87 cl74ct83cn87 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:3... 28 0.90
MGNS013BE06F.B mgns013bE06f.b LENGTH:332bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS012CB12F.B mgns012cB12f.b LENGTH:389bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS011BA10F.B mgns011bA10f.b LENGTH:420bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS011BA09F.B mgns011bA09f.b LENGTH:424bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS010CC05F.B mgns010cC05f.b LENGTH:380bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS010BH05F.B mgns010bH05f.b LENGTH:524bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS010AA09F.B mgns010aA09f.b LENGTH:319bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS009DG08F.B mgns009dG08f.b LENGTH:273bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS009DG06F.B mgns009dG06f.b LENGTH:181bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS007BG02F.B mgns007bG02f.b LENGTH:229bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS007BB09F.B mgns007bB09f.b LENGTH:474bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS002DF10F.B mgns002dF10f.b LENGTH:311bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS002BB01F.B mgns002bB01f.b LENGTH:499bp ; DIRECTION:0 ; CLONE... 26 3.6
MGNS001DA11F.B mgns001dA11f.b LENGTH:336bp ; DIRECTION:0 ; CLONE... 26 3.6
CL81CT91CN95 cl81ct91cn95 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:1... 26 3.6
CL79CT88CN92 cl79ct88cn92 COVERAGE:1.0; CRAWID: 1; TOTAL_ESTS:1;... 26 3.6
CL279CT292CN299 cl279ct292cn299 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 3.6
CL22CT28CN31 cl22ct28cn31 COVERAGE:0.94; CRAWID: 1; TOTAL_ESTS:4... 26 3.6
CL211CT222CN228 cl211ct222cn228 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 3.6
CL178CT189CN195 cl178ct189cn195 COVERAGE:0.97; CRAWID: 1; TOTAL_... 26 3.6
CL175CT186CN192 cl175ct186cn192 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 26 3.6
CL14CT15CN15 cl14ct15cn15 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:6... 26 3.6
CL100CT111CN115 cl100ct111cn115 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 3.6
>MGNS001BG01F.B mgns001bG01f.b LENGTH:563bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 563
Score = 36.2 bits (18), Expect = 0.004
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 267 ctctgcctcgtccacctc 284
||||||||||||||||||
Sbjct: 336 ctctgcctcgtccacctc 353
>MGNS011BG09F.B mgns011bG09f.b LENGTH:354bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 354
Score = 34.2 bits (17), Expect = 0.015
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 229 accaccaccgccgccgc 245
|||||||||||||||||
Sbjct: 327 accaccaccgccgccgc 343
>MGNS011AE01F.B mgns011aE01f.b LENGTH:405bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 405
Score = 34.2 bits (17), Expect = 0.015
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 229 accaccaccgccgccgc 245
|||||||||||||||||
Sbjct: 157 accaccaccgccgccgc 141
>MGNS012AG03F.B mgns012aG03f.b LENGTH:143bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 143
Score = 32.2 bits (16), Expect = 0.058
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 442 cttgatggtcatcttg 457
||||||||||||||||
Sbjct: 36 cttgatggtcatcttg 21
>MGNS007AC06F.B mgns007aC06f.b LENGTH:337bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 337
Score = 32.2 bits (16), Expect = 0.058
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 270 tgcctcgtccacctcg 285
||||||||||||||||
Sbjct: 208 tgcctcgtccacctcg 193
>MGNS010CD02F.B mgns010cD02f.b LENGTH:387bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 387
Score = 30.2 bits (15), Expect = 0.23
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 230 ccaccaccgccgccg 244
|||||||||||||||
Sbjct: 246 ccaccaccgccgccg 232
>MGNS007DC01F.B mgns007dC01f.b LENGTH:275bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 275
Score = 30.2 bits (15), Expect = 0.23
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 305 tccttgcgggccttg 319
|||||||||||||||
Sbjct: 254 tccttgcgggccttg 240
>MGNS002CG05F.B mgns002cG05f.b LENGTH:424bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 424
Score = 30.2 bits (15), Expect = 0.23
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 218 ccgcggccgcgaccaccaccgcc 240
|||| ||||| ||||||||||||
Sbjct: 270 ccgccgccgccaccaccaccgcc 248
>CL35CT41CN44 cl35ct41cn44 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:4;
ESTS:mgns001bA09f.b,mgns002
Length = 724
Score = 30.2 bits (15), Expect = 0.23
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 410 ttcatggtctcgagg 424
|||||||||||||||
Sbjct: 567 ttcatggtctcgagg 553
>CL237CT249CN255 cl237ct249cn255 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:mgns008cG04f.b,mgns
Length = 720
Score = 30.2 bits (15), Expect = 0.23
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 418 ctcgagggagatggg 432
|||||||||||||||
Sbjct: 538 ctcgagggagatggg 524
>MGNS008AC02F.B mgns008aC02f.b LENGTH:425bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 425
Score = 28.2 bits (14), Expect = 0.90
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 304 ctccttgcgggcct 317
||||||||||||||
Sbjct: 378 ctccttgcgggcct 365
>MGNS007CD12F.B mgns007cD12f.b LENGTH:524bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 524
Score = 28.2 bits (14), Expect = 0.90
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 316 cttgttcttgggct 329
||||||||||||||
Sbjct: 456 cttgttcttgggct 443
>MGNS002AB01F.B mgns002aB01f.b LENGTH:449bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 449
Score = 28.2 bits (14), Expect = 0.90
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 308 ttgcgggccttgttcttg 325
|||||||||||| |||||
Sbjct: 304 ttgcgggccttgctcttg 287
>CL74CT83CN87 cl74ct83cn87 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:3;
ESTS:mgns001cE05f.b,mgns002
Length = 658
Score = 28.2 bits (14), Expect = 0.90
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 29 caagaggattcaga 42
||||||||||||||
Sbjct: 470 caagaggattcaga 483
>MGNS013BE06F.B mgns013bE06f.b LENGTH:332bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 332
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 233 ccaccgccgccgc 245
|||||||||||||
Sbjct: 310 ccaccgccgccgc 298
>MGNS012CB12F.B mgns012cB12f.b LENGTH:389bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 389
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 219 cgcggccgcgacc 231
|||||||||||||
Sbjct: 293 cgcggccgcgacc 281
>MGNS011BA10F.B mgns011bA10f.b LENGTH:420bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 420
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 149 catcctccttctc 161
|||||||||||||
Sbjct: 406 catcctccttctc 394
>MGNS011BA09F.B mgns011bA09f.b LENGTH:424bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 424
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 330 tgggcgcgtcgtc 342
|||||||||||||
Sbjct: 141 tgggcgcgtcgtc 129
>MGNS010CC05F.B mgns010cC05f.b LENGTH:380bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 380
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 555 caagctcaagaga 567
|||||||||||||
Sbjct: 342 caagctcaagaga 354
>MGNS010BH05F.B mgns010bH05f.b LENGTH:524bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 524
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 454 cttgacgttgcga 466
|||||||||||||
Sbjct: 221 cttgacgttgcga 233
>MGNS010AA09F.B mgns010aA09f.b LENGTH:319bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 319
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 273 ctcgtccacctcg 285
|||||||||||||
Sbjct: 223 ctcgtccacctcg 211
>MGNS009DG08F.B mgns009dG08f.b LENGTH:273bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 273
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 503 gtgccgtggatga 515
|||||||||||||
Sbjct: 199 gtgccgtggatga 187
>MGNS009DG06F.B mgns009dG06f.b LENGTH:181bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 181
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 293 cggtctgccgcct 305
|||||||||||||
Sbjct: 89 cggtctgccgcct 77
>MGNS007BG02F.B mgns007bG02f.b LENGTH:229bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 229
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 316 cttgttcttgggc 328
|||||||||||||
Sbjct: 37 cttgttcttgggc 49
>MGNS007BB09F.B mgns007bB09f.b LENGTH:474bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 474
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 231 caccaccgccgcc 243
|||||||||||||
Sbjct: 11 caccaccgccgcc 23
>MGNS002DF10F.B mgns002dF10f.b LENGTH:311bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 311
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 295 gtctgccgcctcc 307
|||||||||||||
Sbjct: 227 gtctgccgcctcc 215
>MGNS002BB01F.B mgns002bB01f.b LENGTH:499bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 499
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 228 gaccaccaccgcc 240
|||||||||||||
Sbjct: 379 gaccaccaccgcc 367
>MGNS001DA11F.B mgns001dA11f.b LENGTH:336bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 336
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 283 tcgggcaccacgg 295
|||||||||||||
Sbjct: 184 tcgggcaccacgg 196
>CL81CT91CN95 cl81ct91cn95 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:16;
ESTS:mgns001cH01f.b,mgns00
Length = 1149
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 422 agggagatgggct 434
|||||||||||||
Sbjct: 262 agggagatgggct 250
>CL79CT88CN92 cl79ct88cn92 COVERAGE:1.0; CRAWID: 1; TOTAL_ESTS:1;
ESTS:mgns007bD02f.b; LENGTH:
Length = 447
Score = 26.3 bits (13), Expect = 3.6
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 227 cgaccaccaccgccgcc 243
||||||||||| |||||
Sbjct: 302 cgaccaccaccaccgcc 318
>CL279CT292CN299 cl279ct292cn299 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns012aC12f.b,mgns
Length = 639
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 328 cttgggcgcgtcg 340
|||||||||||||
Sbjct: 496 cttgggcgcgtcg 484
>CL22CT28CN31 cl22ct28cn31 COVERAGE:0.94; CRAWID: 1; TOTAL_ESTS:4;
ESTS:mgns001aD11f.b,mgns002
Length = 474
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 450 tcatcttgacgtt 462
|||||||||||||
Sbjct: 95 tcatcttgacgtt 83
>CL211CT222CN228 cl211ct222cn228 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgns007cD10f.b,mgns
Length = 584
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 170 cgcctggcctcct 182
|||||||||||||
Sbjct: 481 cgcctggcctcct 469
>CL178CT189CN195 cl178ct189cn195 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:5; ESTS:mgns006aB08f.b,mgns
Length = 532
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 194 cgttgttctttct 206
|||||||||||||
Sbjct: 72 cgttgttctttct 60
>CL175CT186CN192 cl175ct186cn192 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgns004cD09f.b,mgns0
Length = 487
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 279 cacctcgggcacc 291
|||||||||||||
Sbjct: 478 cacctcgggcacc 466
>CL14CT15CN15 cl14ct15cn15 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:6;
ESTS:mgns001aC01f.b,mgns002
Length = 691
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 31 agaggattcagat 43
|||||||||||||
Sbjct: 84 agaggattcagat 96
>CL100CT111CN115 cl100ct111cn115 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgns001dG11f.b,mgns
Length = 515
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 320 ttcttgggcttgg 332
|||||||||||||
Sbjct: 272 ttcttgggcttgg 260
Database: /phillip/Ncr/MgrN_SP
Posted date: Feb 18, 2002 5:07 PM
Number of letters in database: 496,015
Number of sequences in database: 1206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 246
Number of Sequences: 1206
Number of extensions: 246
Number of successful extensions: 83
Number of sequences better than 10.0: 37
length of query: 613
length of database: 496,015
effective HSP length: 14
effective length of query: 599
effective length of database: 479,131
effective search space: 286999469
effective search space used: 286999469
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)