The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FgrNT3_10_C01.seq Fgr_10_C01 LENGTH:464bp ; DIRECTION:5
; CLONE:Fgr_10_C01 ; CLONELIB: n/a ; TISSU
(464 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
907,641 sequences; 284,333,007 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC18162.2| (AL451013) conserved hypothetical protein [... 151 2e-36
ref|NP_011926.1| (NC_001140) Function required for Yeast Vi... 51 3e-06
ref|NP_596428.1| (NC_003423) hypothetical protein [Schizosa... 39 0.023
ref|XP_100701.1| (XM_100701) hypothetical protein XP_100701... 36 0.11
emb|CAB94113.1| (AL358712) hypothetical protein L2185.06 [L... 36 0.15
emb|CAB52430.1| (AL031287) match: ESTs: Em:N54388 Em:R14260... 35 0.26
ref|NP_060912.1| (NM_018442) PC326 protein [Homo sapiens] >... 35 0.26
ref|XP_043803.3| (XM_043803) similar to PC326 protein (H. s... 35 0.26
emb|CAB66672.1| (AL136738) hypothetical protein [Homo sapiens] 35 0.26
gb|AAH25262.1| (BC025262) Similar to PC326 protein [Homo sa... 35 0.26
ref|XP_086107.1| (XM_086107) hypothetical protein XP_086107... 34 0.44
ref|NP_500989.1| (NM_068588) Y73B6BR.1.p [Caenorhabditis el... 33 0.97
emb|CAC05338.1| (AJ293028) high-affinity nitrate transporte... 33 0.97
ref|NP_600384.1| (NC_003450) COG0654:2-polyprenyl-6-methoxy... 33 0.97
ref|NP_218082.1| (NC_000962) aspB [Mycobacterium tuberculos... 33 1.3
ref|NP_214663.1| (NC_000962) hypothetical protein Rv0149 [M... 32 1.7
ref|NP_079492.2| (NM_025216) wingless-type MMTV integration... 32 2.2
dbj|BAB14898.1| (AK024363) unnamed protein product [Homo sa... 32 2.2
gb|AAH03544.1|AAH03544 (BC003544) Unknown (protein for IMAG... 32 2.2
dbj|BAB21848.1| (AB051544) KIAA1757 protein [Homo sapiens] 32 2.8
ref|NP_060657.1| (NM_018187) hypothetical protein FLJ10707;... 32 2.8
dbj|BAB14903.1| (AK024384) unnamed protein product [Homo sa... 32 2.8
ref|XP_052245.3| (XM_052245) hypothetical protein FLJ10707 ... 32 2.8
dbj|BAB15144.1| (AK025478) unnamed protein product [Homo sa... 32 2.8
emb|CAC09439.1| (AL442073) hypothetical protein [Homo sapiens] 32 2.8
ref|XP_090919.1| (XM_090919) hypothetical protein XP_090919... 31 3.7
ref|NP_174233.1| (NM_102680) RNA-binding protein MEI2, puta... 31 3.7
gb|AAL32691.1| (AY062613) RNA-binding protein MEI2, putativ... 31 3.7
ref|XP_096648.1| (XM_096648) hypothetical protein XP_096648... 31 3.7
emb|CAB64579.1| (AL135941) hypothetical protein L391.02 [Le... 31 4.8
ref|NP_497478.1| (NM_065077) F53A3.4.p [Caenorhabditis eleg... 31 4.8
ref|XP_095174.1| (XM_095174) hypothetical protein XP_095174... 31 4.8
gb|AAF56067.1| (AE003740) CG7029 gene product [Drosophila m... 31 4.8
gb|AAC64322.1| (U82441) EBF-2 [Mus musculus] 31 4.8
ref|NP_034225.1| (NM_010095) early B-cell factor 2; Olf-1/E... 31 4.8
gb|AAB58423.1| (U71189) met-mesencephalon-olfactory transcr... 31 4.8
gb|AAF46041.1| (AE003434) CG15783 gene product [Drosophila ... 31 4.8
gb|AAA21543.1| (U09816) GM2 activator protein [Mus musculus] 31 4.8
pir||S35613 ganglioside M2 activator protein precursor - mouse 31 4.8
ref|NP_034429.1| (NM_010299) GM2 ganglioside activator prot... 31 4.8
pir||S72874 lysine-specific permease homolog lysP - Mycobac... 30 6.3
gb|AAF64523.1| (AF253321) cervical mucin MUC5B [Homo sapiens] 30 6.3
emb|CAA22915.1| (AL035310) putative L-asparagine permease [... 30 6.3
ref|NP_125718.1| (NC_000868) putative TREHALOSE/MALTOSE BIN... 30 6.3
ref|NP_337005.1| (NC_002755) hypothetical protein [Mycobact... 30 6.3
ref|NP_241287.1| (NC_002570) N-acetylglucosamine-6-phosphat... 30 6.3
ref|NP_301938.1| (NC_002677) probable L-asparagine permease... 30 6.3
ref|NP_301937.1| (NC_002677) probable L-asparagine permease... 30 6.3
pir||T45025 mucin MUC5B, tracheobronchial [imported] - huma... 30 8.2
gb|AAL25132.1|AF432503_1 (AF432503) cellulose synthase-like... 30 8.2
gb|AAL25131.1|AF432502_1 (AF432502) cellulose synthase-like... 30 8.2
gb|AAB35070.2| (S78869) mucin [Bos taurus] 30 8.2
pir||S60617 hypothetical protein 3 - human calicivirus (str... 30 8.2
ref|XP_095983.1| (XM_095983) hypothetical protein XP_095983... 30 8.2
ref|NP_193840.1| (NM_118226) putative protein [Arabidopsis ... 30 8.2
ref|NP_012055.1| (NC_001140) Prospore Formation at Selected... 30 8.2
>emb|CAC18162.2| (AL451013) conserved hypothetical protein [Neurospora crassa]
Length = 312
Score = 151 bits (381), Expect = 2e-36
Identities = 79/153 (51%), Positives = 103/153 (66%), Gaps = 8/153 (5%)
Frame = +2
Query: 26 TFKMKGE-RLRPTFGLLLQS------GSAFSRTGQIRQLHKTRPAHP-IPKPVPFVPDVP 181
T +MK R++ T GLL + +A R HKT P IPKP PFVPDVP
Sbjct: 74 TTRMKSSLRIQSTLGLLFRPCAVSAPATAPGLNAHARWAHKTAAQLPLIPKPTPFVPDVP 133
Query: 182 TFLTLIGRGLNKYANKFPSWNALFSLTSPELKELGIEPPRNRRYLLQWMQKYRKGSLGIG 361
TFLTLIGR L ++A+KFP+W ALF+LT+ +L+ELG+EPPR RRYLL+W Q++R+G GIG
Sbjct: 134 TFLTLIGRDLKQHADKFPTWEALFTLTTDQLRELGVEPPRARRYLLRWRQRFREGKFGIG 193
Query: 362 GDFRHVKNGEAVLRIATPPANTLKNTXWVVNVP 460
GD +HV+NG A L+I A+ + + VVNVP
Sbjct: 194 GDLKHVENGVAYLKIHEKEASPTRTSRRVVNVP 226
>ref|NP_011926.1| (NC_001140) Function required for Yeast Viability on toxin
exposure; Fyv4p [Saccharomyces cerevisiae]
sp|P38783|YHL9_YEAST HYPOTHETICAL 15.3 KD PROTEIN IN MED6-VMA22 INTERGENIC REGION
pir||S46702 hypothetical protein YHR059w - yeast (Saccharomyces cerevisiae)
gb|AAB68381.1| (U00061) Yhr059wp [Saccharomyces cerevisiae]
Length = 130
Score = 51.2 bits (121), Expect = 3e-06
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Frame = +2
Query: 47 RLRPTFGLLLQSGSAFSRTGQIRQLHKTRPAHPIPKPVPFVPDVPTFLTLIGRGLNKYAN 226
R+ F L L+S A + R + IPKP VPDV FL IGR N+ +
Sbjct: 5 RISHKFPLFLRSSLAAPKAAY-------RFSSTIPKPSDQVPDVDAFLNKIGRNCNELKD 57
Query: 227 KFP-SWNALFSLTSPELKELGIEPPRNRRYLLQWMQKYR 340
F +WN LF S LKE G+ + R+Y+L+ + YR
Sbjct: 58 TFENNWNNLFQWDSKILKEKGVN-IQQRKYILKQVHNYR 95
>ref|NP_596428.1| (NC_003423) hypothetical protein [Schizosaccharomyces pombe]
pir||T40483 hypothetical protein SPBC4B4.11 - fission yeast
(Schizosaccharomyces pombe)
emb|CAA19291.1| (AL023706) hypothetical protein [Schizosaccharomyces pombe]
Length = 113
Score = 38.5 bits (88), Expect = 0.023
Identities = 22/73 (30%), Positives = 38/73 (51%), Gaps = 1/73 (1%)
Frame = +2
Query: 131 RPAHPIPKPVPFVPDVPTFLTLIGRGLNKYAN-KFPSWNALFSLTSPELKELGIEPPRNR 307
R A +P P + + F IGR + N KF SW+ LF ++ +K+ GI+ R R
Sbjct: 21 RYASTVPSPRSGISNTNDFFKRIGRDTAEKVNGKFESWDGLFRKSTKTMKKEGID-VRTR 79
Query: 308 RYLLQWMQKYRKG 346
+Y+ ++++G
Sbjct: 80 KYIASQRNRFKEG 92
>ref|XP_100701.1| (XM_100701) hypothetical protein XP_100701 [Homo sapiens]
Length = 133
Score = 36.2 bits (82), Expect = 0.11
Identities = 37/125 (29%), Positives = 49/125 (38%), Gaps = 15/125 (12%)
Frame = -3
Query: 330 CIHCKRYRRFRGGSMPNSLSSGEVREKRAFHEGNLLAYLLRPRPIRVRKV--GTSGTK-- 163
C + + RGG + S G R R ++ LL RP R+ G S TK
Sbjct: 3 CANIRARAGVRGGRGTHGHSGGISRRVRGLNKQGLLGQESRPEDPSTRRALRGPSATKPQ 62
Query: 162 --GTGLG----IGCAGRVLWSCRICPVLEKA-----LPLCRSKPNVGLSRSPFILNVQWV 16
G GLG +GC G PV+ A P + P V L PF L +Q +
Sbjct: 63 EEGKGLGEGPALGCGGGSSLLGSPAPVIRGAGLGGRSPRPPAAPRVTLGSDPFDLYLQAL 122
Query: 15 EWQLV 1
W L+
Sbjct: 123 AWCLL 127
>emb|CAB94113.1| (AL358712) hypothetical protein L2185.06 [Leishmania major]
Length = 648
Score = 35.8 bits (81), Expect = 0.15
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Frame = +3
Query: 45 NDSGQHLACFCKAAAPFQGQDKFDNSTRHGLRTRSLSPYLSSPMCRLFSP*SAEASTNTP 224
+D+ ++LA + A +Q Q + ++ G T+S L CR+ S A T+ P
Sbjct: 29 DDTNRNLAAYHLYAEAYQTQQEESRRSQRGRATKSKGVSL----CRIDQGASVGAETDLP 84
Query: 225 TS-SPHGTLSSPSPHQNSRSWASNH-HETVGTFYSGCRN 335
S +PH PS +SR+ +S H E+ SG R+
Sbjct: 85 ASENPHFPTGGPSDANHSRASSSEHVGESDEVLLSGVRS 123
>emb|CAB52430.1| (AL031287) match: ESTs: Em:N54388 Em:R14260 Em:H08089 Em:Z24943
Em:AA130053 [Homo sapiens]
Length = 485
Score = 35.0 bits (79), Expect = 0.26
Identities = 25/53 (47%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +3
Query: 150 LSPYLSSPMCRLFSP*SAEA-STNTPTSSPHGT--LSSPSPHQNSRSWASNHH 299
L P SS M SA+A ST++PT SPH T LSSP Q AS HH
Sbjct: 376 LQPSTSSTM-------SAQAHSTSSPTESPHSTPLLSSPDSEQRQSVEASGHH 421
>ref|NP_060912.1| (NM_018442) PC326 protein [Homo sapiens]
gb|AAF67474.1|AF150734_1 (AF150734) PC326 protein [Homo sapiens]
Length = 533
Score = 35.0 bits (79), Expect = 0.26
Identities = 25/53 (47%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +3
Query: 150 LSPYLSSPMCRLFSP*SAEA-STNTPTSSPHGT--LSSPSPHQNSRSWASNHH 299
L P SS M SA+A ST++PT SPH T LSSP Q AS HH
Sbjct: 62 LQPSTSSTM-------SAQAHSTSSPTESPHSTPLLSSPDSEQRQSVEASGHH 107
>ref|XP_043803.3| (XM_043803) similar to PC326 protein (H. sapiens) [Homo sapiens]
Length = 831
Score = 35.0 bits (79), Expect = 0.26
Identities = 25/53 (47%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +3
Query: 150 LSPYLSSPMCRLFSP*SAEA-STNTPTSSPHGT--LSSPSPHQNSRSWASNHH 299
L P SS M SA+A ST++PT SPH T LSSP Q AS HH
Sbjct: 380 LQPSTSSTM-------SAQAHSTSSPTESPHSTPLLSSPDSEQRQSVEASGHH 425
>emb|CAB66672.1| (AL136738) hypothetical protein [Homo sapiens]
Length = 482
Score = 35.0 bits (79), Expect = 0.26
Identities = 25/53 (47%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +3
Query: 150 LSPYLSSPMCRLFSP*SAEA-STNTPTSSPHGT--LSSPSPHQNSRSWASNHH 299
L P SS M SA+A ST++PT SPH T LSSP Q AS HH
Sbjct: 11 LQPSTSSTM-------SAQAHSTSSPTESPHSTPLLSSPDSEQRQSVEASGHH 56
>gb|AAH25262.1| (BC025262) Similar to PC326 protein [Homo sapiens]
Length = 513
Score = 35.0 bits (79), Expect = 0.26
Identities = 25/53 (47%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +3
Query: 150 LSPYLSSPMCRLFSP*SAEA-STNTPTSSPHGT--LSSPSPHQNSRSWASNHH 299
L P SS M SA+A ST++PT SPH T LSSP Q AS HH
Sbjct: 62 LQPSTSSTM-------SAQAHSTSSPTESPHSTPLLSSPDSEQRQSVEASGHH 107
>ref|XP_086107.1| (XM_086107) hypothetical protein XP_086107 [Homo sapiens]
Length = 210
Score = 34.3 bits (77), Expect = 0.44
Identities = 17/32 (53%), Positives = 18/32 (56%)
Frame = +1
Query: 277 GVGHRTTTKPSVPFTVDAEISKGLSGNWWGLP 372
G GHR TT P + FTV I G G WGLP
Sbjct: 60 GAGHRQTTSPPLLFTVHIPIKGG--GECWGLP 89
>ref|NP_500989.1| (NM_068588) Y73B6BR.1.p [Caenorhabditis elegans]
gb|AAF60877.1| (AC024863) Hypothetical protein Y73B6BR.1 [Caenorhabditis elegans]
Length = 481
Score = 33.1 bits (74), Expect = 0.97
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 210 STNTPTSSPHGTLSSPSPHQNSRSWASNHHETVGTFYSGCRNIE 341
+TNT T++ +GT S + NS SW S T +G +NI+
Sbjct: 53 NTNTNTNTGYGTQSQNYGNANSNSWGSAAANVANTLQTGYQNIQ 96
>emb|CAC05338.1| (AJ293028) high-affinity nitrate transporter [Brassica napus]
Length = 530
Score = 33.1 bits (74), Expect = 0.97
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Frame = +2
Query: 230 FPSWNALFSLTSPELKELGIEPPRNRRYLLQWMQKYRKGSLGIGGDFRHVKN-----GEA 394
FP W ++F S + ++ P+ Y +W ++ ++ ++ G R KN G
Sbjct: 461 FPQWGSMFLPPSTD----PVKGPKEHYYASEWNEQEKEKNMH-QGSLRFAKNAKSEGGRR 515
Query: 395 VLRIATPPANTLKN 436
V ATPP NT N
Sbjct: 516 VRSAATPPENTPNN 529
>ref|NP_600384.1| (NC_003450) COG0654:2-polyprenyl-6-methoxyphenol hydroxylase and
related FAD-dependent oxidoreductases [Corynebacterium
glutamicum]
Length = 530
Score = 33.1 bits (74), Expect = 0.97
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = +2
Query: 152 KPVPFVPDVP-----TFLTLIGRGLNKYANKFPSWNALFSLTSPELKELGIEPPRNRRYL 316
+P VP P F+ L G L + A++ +WN L K + +E R+
Sbjct: 224 RPTTIVPGGPGRRRWEFMALPGEDLKELASEESAWNLLEPWDVTPGKAI-LERSAVYRFQ 282
Query: 317 LQWMQKYRKGSLGIGGDFRHV 379
+W Q++R G I GD H+
Sbjct: 283 ARWAQEWRSGRALIAGDAAHL 303
>ref|NP_218082.1| (NC_000962) aspB [Mycobacterium tuberculosis H37Rv]
pir||C70605 probable aspartate transaminase (EC 2.6.1.1) aspB [similarity] -
Mycobacterium tuberculosis (strain H37RV)
emb|CAB07140.1| (Z92774) aspB [Mycobacterium tuberculosis H37Rv]
Length = 388
Score = 32.7 bits (73), Expect = 1.3
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 58 NIWLASAKRQRLFKDRTNSTTPQDTACAPDP 150
++WLA+A+RQR D N + Q +A AP+P
Sbjct: 18 DVWLAAAERQRTHGDLVNLSAGQPSAGAPEP 48
>ref|NP_214663.1| (NC_000962) hypothetical protein Rv0149 [Mycobacterium tuberculosis
H37Rv]
ref|NP_334567.1| (NC_002755) quinone oxidoreductase [Mycobacterium tuberculosis
CDC1551]
pir||H70617 hypothetical protein Rv0149 - Mycobacterium tuberculosis (strain
H37RV)
emb|CAB07055.1| (Z92770) hypothetical protein Rv0149 [Mycobacterium tuberculosis
H37Rv]
gb|AAK44381.1| (AE006926) quinone oxidoreductase [Mycobacterium tuberculosis
CDC1551]
Length = 322
Score = 32.3 bits (72), Expect = 1.7
Identities = 17/48 (35%), Positives = 26/48 (53%)
Frame = +2
Query: 188 LTLIGRGLNKYANKFPSWNALFSLTSPELKELGIEPPRNRRYLLQWMQ 331
++++G G +Y N P ALF+ +L LG+ PP +RY L Q
Sbjct: 256 ISVVGVGWGEYLNAVPGSAALFAWGLNQLVFLGLRPPPPQRYPLSEAQ 303
>ref|NP_079492.2| (NM_025216) wingless-type MMTV integration site family, member 10A
precursor [Homo sapiens]
sp|Q9GZT5|WN1A_HUMAN WNT-10A PROTEIN PRECURSOR
gb|AAG38660.1| (AY009400) WNT10a precursor [Homo sapiens]
gb|AAG45153.1|AF315943_1 (AF315943) WNT10A [Homo sapiens]
Length = 417
Score = 32.0 bits (71), Expect = 2.2
Identities = 19/56 (33%), Positives = 25/56 (43%)
Frame = +1
Query: 238 MERSLLPHLTRTQGVGHRTTTKPSVPFTVDAEISKGLSGNWWGLPTCEEWGGCSED 405
+ R L L R +G+ H P++P S GL +W EWGGCS D
Sbjct: 174 LHRLQLDALQRGKGLSHGVPEHPALPTA-----SPGLQDSW-------EWGGCSPD 217
>dbj|BAB14898.1| (AK024363) unnamed protein product [Homo sapiens]
dbj|BAB55602.1| (AB059569) WNT10A [Homo sapiens]
Length = 417
Score = 32.0 bits (71), Expect = 2.2
Identities = 19/56 (33%), Positives = 25/56 (43%)
Frame = +1
Query: 238 MERSLLPHLTRTQGVGHRTTTKPSVPFTVDAEISKGLSGNWWGLPTCEEWGGCSED 405
+ R L L R +G+ H P++P S GL +W EWGGCS D
Sbjct: 174 LHRLQLDALQRGKGLSHGVPEHPALPTA-----SPGLQDSW-------EWGGCSPD 217
>gb|AAH03544.1|AAH03544 (BC003544) Unknown (protein for IMAGE:3611751) [Homo sapiens]
Length = 293
Score = 32.0 bits (71), Expect = 2.2
Identities = 19/56 (33%), Positives = 25/56 (43%)
Frame = +1
Query: 238 MERSLLPHLTRTQGVGHRTTTKPSVPFTVDAEISKGLSGNWWGLPTCEEWGGCSED 405
+ R L L R +G+ H P++P S GL +W EWGGCS D
Sbjct: 50 LHRLQLDALQRGKGLSHGVPEHPALPTA-----SPGLQDSW-------EWGGCSPD 93
>dbj|BAB21848.1| (AB051544) KIAA1757 protein [Homo sapiens]
Length = 1409
Score = 31.6 bits (70), Expect = 2.8
Identities = 30/77 (38%), Positives = 33/77 (41%)
Frame = +3
Query: 51 SGQHLACFCKAAAPFQGQDKFDNSTRHGLRTRSLSPYLSSPMCRLFSP*SAEASTNTPTS 230
S LA F F Q NST L RS +SP L P + S + S
Sbjct: 1274 STDSLAPFTGTPGYFSSQPHSGNSTGSNLPRRSCPSSAASPT--LQGPSDSPTSDSVSQS 1331
Query: 231 SPHGTLSSPSPHQNSRS 281
S GTLSS S QNSRS
Sbjct: 1332 ST-GTLSSTSFPQNSRS 1347
>ref|NP_060657.1| (NM_018187) hypothetical protein FLJ10707; KIAA1757 protein [Homo
sapiens]
dbj|BAA91762.1| (AK001569) unnamed protein product [Homo sapiens]
Length = 924
Score = 31.6 bits (70), Expect = 2.8
Identities = 30/77 (38%), Positives = 33/77 (41%)
Frame = +3
Query: 51 SGQHLACFCKAAAPFQGQDKFDNSTRHGLRTRSLSPYLSSPMCRLFSP*SAEASTNTPTS 230
S LA F F Q NST L RS +SP L P + S + S
Sbjct: 789 STDSLAPFTGTPGYFSSQPHSGNSTGSNLPRRSCPSSAASPT--LQGPSDSPTSDSVSQS 846
Query: 231 SPHGTLSSPSPHQNSRS 281
S GTLSS S QNSRS
Sbjct: 847 ST-GTLSSTSFPQNSRS 862
>dbj|BAB14903.1| (AK024384) unnamed protein product [Homo sapiens]
Length = 924
Score = 31.6 bits (70), Expect = 2.8
Identities = 30/77 (38%), Positives = 33/77 (41%)
Frame = +3
Query: 51 SGQHLACFCKAAAPFQGQDKFDNSTRHGLRTRSLSPYLSSPMCRLFSP*SAEASTNTPTS 230
S LA F F Q NST L RS +SP L P + S + S
Sbjct: 789 STDSLAPFTGTPGYFSSQPHSGNSTGSNLPRRSCPSSAASPT--LQGPSDSPTSDSVSQS 846
Query: 231 SPHGTLSSPSPHQNSRS 281
S GTLSS S QNSRS
Sbjct: 847 ST-GTLSSTSFPQNSRS 862
>ref|XP_052245.3| (XM_052245) hypothetical protein FLJ10707 [Homo sapiens]
ref|XP_057869.3| (XM_057869) similar to hypothetical protein FLJ10707 (H. sapiens)
[Homo sapiens]
gb|AAH20956.1|AAH20956 (BC020956) hypothetical protein FLJ10707 [Homo sapiens]
Length = 924
Score = 31.6 bits (70), Expect = 2.8
Identities = 30/77 (38%), Positives = 33/77 (41%)
Frame = +3
Query: 51 SGQHLACFCKAAAPFQGQDKFDNSTRHGLRTRSLSPYLSSPMCRLFSP*SAEASTNTPTS 230
S LA F F Q NST L RS +SP L P + S + S
Sbjct: 789 STDSLAPFTGTPGYFSSQPHSGNSTGSNLPRRSCPSSAASPT--LQGPSDSPTSDSVSQS 846
Query: 231 SPHGTLSSPSPHQNSRS 281
S GTLSS S QNSRS
Sbjct: 847 ST-GTLSSTSFPQNSRS 862
>dbj|BAB15144.1| (AK025478) unnamed protein product [Homo sapiens]
Length = 603
Score = 31.6 bits (70), Expect = 2.8
Identities = 30/77 (38%), Positives = 33/77 (41%)
Frame = +3
Query: 51 SGQHLACFCKAAAPFQGQDKFDNSTRHGLRTRSLSPYLSSPMCRLFSP*SAEASTNTPTS 230
S LA F F Q NST L RS +SP L P + S + S
Sbjct: 468 STDSLAPFTGTPGYFSSQPHSGNSTGSNLPRRSCPSSAASPT--LQGPSDSPTSDSVSQS 525
Query: 231 SPHGTLSSPSPHQNSRS 281
S GTLSS S QNSRS
Sbjct: 526 ST-GTLSSTSFPQNSRS 541
>emb|CAC09439.1| (AL442073) hypothetical protein [Homo sapiens]
Length = 920
Score = 31.6 bits (70), Expect = 2.8
Identities = 30/77 (38%), Positives = 33/77 (41%)
Frame = +3
Query: 51 SGQHLACFCKAAAPFQGQDKFDNSTRHGLRTRSLSPYLSSPMCRLFSP*SAEASTNTPTS 230
S LA F F Q NST L RS +SP L P + S + S
Sbjct: 785 STDSLAPFTGTPGYFSSQPHSGNSTGSNLPRRSCPSSAASPT--LQGPSDSPTSDSVSQS 842
Query: 231 SPHGTLSSPSPHQNSRS 281
S GTLSS S QNSRS
Sbjct: 843 ST-GTLSSTSFPQNSRS 858
>ref|XP_090919.1| (XM_090919) hypothetical protein XP_090919 [Homo sapiens]
Length = 1668
Score = 31.2 bits (69), Expect = 3.7
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +3
Query: 126 RHGLRTRSLSPYLSSPMCRLFSP*SAEAST-NTPTSSPHGTLSSPSPHQNSRSWASNHHE 302
RHG+ P+ S + +F+P A+ T + P+S LS P + ++ S+H E
Sbjct: 856 RHGMSLLPGLPHPYSDLADVFNPKEADDETSDQPSSDGSDDLSESEPSELQQAGDSDHSE 915
Query: 303 TVGTFYSGCRNIERALWELVG 365
TFY C + A WE VG
Sbjct: 916 ---TFYE-CPS--TAPWEPVG 930
>ref|NP_174233.1| (NM_102680) RNA-binding protein MEI2, putative [Arabidopsis
thaliana]
gb|AAG51742.1|AC068667_21 (AC068667) RNA-binding protein MEI2, putative; 36123-32976
[Arabidopsis thaliana]
Length = 779
Score = 31.2 bits (69), Expect = 3.7
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = +3
Query: 132 GLRTRSLSPYL-SSPMCRLFSP*SA---EASTNTPTSSPHGTLSSPSPHQNSRSWASNHH 299
G+ T S S +L SP R S+ +ST P S S P PHQ+ S+HH
Sbjct: 446 GIETLSGSEFLWGSPNARSEPSSSSVWSTSSTGNPLFSTRVDRSVPFPHQHQNQSRSHHH 505
Query: 300 ETVGTFYSG 326
VG+ SG
Sbjct: 506 FHVGSAPSG 514
>gb|AAL32691.1| (AY062613) RNA-binding protein MEI2, putative [Arabidopsis
thaliana]
gb|AAL49866.1| (AY070368) putative RNA-binding protein MEI2 [Arabidopsis thaliana]
Length = 800
Score = 31.2 bits (69), Expect = 3.7
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = +3
Query: 132 GLRTRSLSPYL-SSPMCRLFSP*SA---EASTNTPTSSPHGTLSSPSPHQNSRSWASNHH 299
G+ T S S +L SP R S+ +ST P S S P PHQ+ S+HH
Sbjct: 458 GIETLSGSEFLWGSPNARSEPSSSSVWSTSSTGNPLFSTRVDRSVPFPHQHQNQSRSHHH 517
Query: 300 ETVGTFYSG 326
VG+ SG
Sbjct: 518 FHVGSAPSG 526
>ref|XP_096648.1| (XM_096648) hypothetical protein XP_096648 [Homo sapiens]
Length = 108
Score = 31.2 bits (69), Expect = 3.7
Identities = 19/74 (25%), Positives = 30/74 (39%)
Frame = +3
Query: 90 PFQGQDKFDNSTRHGLRTRSLSPYLSSPMCRLFSP*SAEASTNTPTSSPHGTLSSPSPHQ 269
PF+GQ + L L P + P+C A N P++ HG+ P
Sbjct: 10 PFEGQAPHPPARPAALAPAPLGPQMPPPLC--------PAPANAPSALDHGSPPRRGPSA 61
Query: 270 NSRSWASNHHETVG 311
S + S H +++G
Sbjct: 62 PSPPFLSPHSQSLG 75
>emb|CAB64579.1| (AL135941) hypothetical protein L391.02 [Leishmania major]
Length = 1983
Score = 30.8 bits (68), Expect = 4.8
Identities = 20/49 (40%), Positives = 25/49 (50%), Gaps = 2/49 (4%)
Frame = +1
Query: 277 GVGHRTTTKPSVPFTVDAEISKGLSGNWWGLPT--CEEWGGCSEDCDAT 417
G+ H V FTVDAE+ LSGN WG+ + GGC+ AT
Sbjct: 1198 GLHHAEQLMAQVLFTVDAEMLH-LSGNTWGIASGAGAREGGCTRVTSAT 1245
>ref|NP_497478.1| (NM_065077) F53A3.4.p [Caenorhabditis elegans]
gb|AAF02169.3| (AF025460) Hypothetical protein F53A3.4 [Caenorhabditis elegans]
Length = 545
Score = 30.8 bits (68), Expect = 4.8
Identities = 14/26 (53%), Positives = 18/26 (68%)
Frame = +3
Query: 198 SAEASTNTPTSSPHGTLSSPSPHQNS 275
+A +ST+TP+SS H SSP HQ S
Sbjct: 53 AASSSTSTPSSSSHHKKSSPPHHQKS 78
>ref|XP_095174.1| (XM_095174) hypothetical protein XP_095174 [Homo sapiens]
Length = 1104
Score = 30.8 bits (68), Expect = 4.8
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 110 IRQLHKTRPAHPIPKPVPFVPDVPTFLTLIGRGLNKYANKFPSW 241
+R+L + H +PKP P PD P +T + L + + FPS+
Sbjct: 516 LRELLREHTDHSLPKPGPLSPDSPAIITPGDQVLLEESWSFPSF 559
>gb|AAF56067.1| (AE003740) CG7029 gene product [Drosophila melanogaster]
Length = 1744
Score = 30.8 bits (68), Expect = 4.8
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = +3
Query: 204 EASTNTPTSSPHGTLSSPSPHQNS 275
E STN S PH T S PHQNS
Sbjct: 230 EFSTNNDHSKPHFTASQQKPHQNS 253
>gb|AAC64322.1| (U82441) EBF-2 [Mus musculus]
Length = 575
Score = 30.8 bits (68), Expect = 4.8
Identities = 19/56 (33%), Positives = 29/56 (50%)
Frame = +3
Query: 123 TRHGLRTRSLSPYLSSPMCRLFSP*SAEASTNTPTSSPHGTLSSPSPHQNSRSWAS 290
+ + + S++ Y + PM L P S +PT SP+G +SS SP S S +S
Sbjct: 470 SNYSTSSNSMNGYSNVPMANLGVPGSPGFLNGSPTGSPYGIMSS-SPTVGSSSTSS 524
>ref|NP_034225.1| (NM_010095) early B-cell factor 2; Olf-1/EBF-like 3 [Mus musculus]
sp|O08792|COE2_MOUSE Transcription factor COE2 (Early B-cell factor 2) (EBF-2)
(OLF-1/EBF-like 3) (OE-3) (O/E-3)
(Metencephalon-mesencephalon-olfactory transcription
factor 1) (MET-mesencephalon-olfactory transcription
factor 1) (MET-mesencephalon-olfactory TF1)
gb|AAB58323.1| (U92703) Olf-1/EBF-like-3 transcription factor [Mus musculus]
Length = 575
Score = 30.8 bits (68), Expect = 4.8
Identities = 19/56 (33%), Positives = 29/56 (50%)
Frame = +3
Query: 123 TRHGLRTRSLSPYLSSPMCRLFSP*SAEASTNTPTSSPHGTLSSPSPHQNSRSWAS 290
+ + + S++ Y + PM L P S +PT SP+G +SS SP S S +S
Sbjct: 470 SNYSTSSNSMNGYSNVPMANLGVPGSPGFLNGSPTGSPYGIMSS-SPTVGSSSTSS 524
>gb|AAB58423.1| (U71189) met-mesencephalon-olfactory transcription factor 1 [Mus
musculus]
Length = 553
Score = 30.8 bits (68), Expect = 4.8
Identities = 19/56 (33%), Positives = 29/56 (50%)
Frame = +3
Query: 123 TRHGLRTRSLSPYLSSPMCRLFSP*SAEASTNTPTSSPHGTLSSPSPHQNSRSWAS 290
+ + + S++ Y + PM L P S +PT SP+G +SS SP S S +S
Sbjct: 448 SNYSTSSNSMNGYSNVPMANLGVPGSPGFLNGSPTGSPYGIMSS-SPTVGSSSTSS 502
>gb|AAF46041.1| (AE003434) CG15783 gene product [Drosophila melanogaster]
Length = 306
Score = 30.8 bits (68), Expect = 4.8
Identities = 15/40 (37%), Positives = 18/40 (44%)
Frame = +3
Query: 207 ASTNTPTSSPHGTLSSPSPHQNSRSWASNHHETVGTFYSG 326
AST +SSPH L SPSP Q + + Y G
Sbjct: 90 ASTTNSSSSPHIELGSPSPQQQQHLQLQQQQQQQASLYLG 129
>gb|AAA21543.1| (U09816) GM2 activator protein [Mus musculus]
Length = 193
Score = 30.8 bits (68), Expect = 4.8
Identities = 17/49 (34%), Positives = 26/49 (52%), Gaps = 6/49 (12%)
Frame = +1
Query: 301 KPSVPFT----VDAEISKGLSGNWWGLPTCEEWGGCSED--CDATCKYL 429
K SVP T V+ + K ++G W +P E+ G CS + CD +Y+
Sbjct: 71 KTSVPLTAPQKVELTVEKEVAGFWVKIPCVEQLGSCSYENICDLIDEYI 119
>pir||S35613 ganglioside M2 activator protein precursor - mouse
Length = 193
Score = 30.8 bits (68), Expect = 4.8
Identities = 17/49 (34%), Positives = 26/49 (52%), Gaps = 6/49 (12%)
Frame = +1
Query: 301 KPSVPFT----VDAEISKGLSGNWWGLPTCEEWGGCSED--CDATCKYL 429
K SVP T V+ + K ++G W +P E+ G CS + CD +Y+
Sbjct: 71 KTSVPLTAPQKVELTVEKEVAGFWIKIPCVEQLGSCSYENICDLIDEYI 119
>ref|NP_034429.1| (NM_010299) GM2 ganglioside activator protein [Mus musculus]
sp|Q60648|SAP3_MOUSE GANGLIOSIDE GM2 ACTIVATOR PRECURSOR (CEREBROSIDE SULFATE ACTIVATOR
PROTEIN) (SHINGOLIPID ACTIVATOR PROTEIN 3) (SAP-3)
gb|AAA61929.1| (L19526) GM2 activator protein [Mus musculus]
gb|AAB06275.1| (U34359) GM2 activator protein [Mus musculus]
gb|AAH04651.1|AAH04651 (BC004651) GM2 ganglioside activator protein [Mus musculus]
Length = 193
Score = 30.8 bits (68), Expect = 4.8
Identities = 17/49 (34%), Positives = 26/49 (52%), Gaps = 6/49 (12%)
Frame = +1
Query: 301 KPSVPFT----VDAEISKGLSGNWWGLPTCEEWGGCSED--CDATCKYL 429
K SVP T V+ + K ++G W +P E+ G CS + CD +Y+
Sbjct: 71 KTSVPLTAPQKVELTVEKEVAGFWVKIPCVEQLGSCSYENICDLIDEYI 119
>pir||S72874 lysine-specific permease homolog lysP - Mycobacterium leprae
gb|AAA17214.1| (U00017) lysP; B2126_F2_82 [Mycobacterium leprae]
Length = 244
Score = 30.4 bits (67), Expect = 6.3
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -3
Query: 270 SGEVREKRAFHEGNLLAYLLRPRPIRVRKVGTSGTKGTGLGIGCAGRV 127
+G + E+ +H+G L+PR +++ +G G GTGL +G GR+
Sbjct: 17 AGVLGEEAGYHKG------LKPRQLQM--IGIGGAIGTGLFLGAGGRL 56
>gb|AAF64523.1| (AF253321) cervical mucin MUC5B [Homo sapiens]
Length = 716
Score = 30.4 bits (67), Expect = 6.3
Identities = 23/66 (34%), Positives = 34/66 (50%), Gaps = 6/66 (9%)
Frame = +3
Query: 135 LRTRSLSPYLSSPMCRLFSP*SAEASTNTP-----TSSPHG-TLSSPSPHQNSRSWASNH 296
L T + +P +S +P SA +T+TP T++ HG +LS SPH +W S
Sbjct: 66 LTTTATTPAATS---NTVTPSSALGTTHTPPVPNTTATTHGRSLSPSSPHTVRTAWTSAT 122
Query: 297 HETVGT 314
T+GT
Sbjct: 123 SGTLGT 128
>emb|CAA22915.1| (AL035310) putative L-asparagine permease [Mycobacterium leprae]
Length = 366
Score = 30.4 bits (67), Expect = 6.3
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -3
Query: 270 SGEVREKRAFHEGNLLAYLLRPRPIRVRKVGTSGTKGTGLGIGCAGRV 127
+G + E+ +H+G L+PR +++ +G G GTGL +G GR+
Sbjct: 17 AGVLGEEAGYHKG------LKPRQLQM--IGIGGAIGTGLFLGAGGRL 56
>ref|NP_125718.1| (NC_000868) putative TREHALOSE/MALTOSE BINDING PROTEIN or
SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC [Pyrococcus
abyssi]
pir||G75187 probable trehalose/maltose binding protein or spermidine/
putrescine-binding periplasmic PAB2333 - Pyrococcus
abyssi (strain Orsay)
emb|CAB48950.1| (AJ248283) putative TREHALOSE/MALTOSE BINDING PROTEIN or
SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC [Pyrococcus
abyssi]
Length = 426
Score = 30.4 bits (67), Expect = 6.3
Identities = 25/76 (32%), Positives = 36/76 (46%), Gaps = 7/76 (9%)
Frame = +2
Query: 89 AFSRTGQIRQLHKTRPAHPIPKPVPFVPDVPTFL-TLIGRGLNKYA-NKFPSWNALFSLT 262
A+ T +IR +T+P + PVP P F+ L G + K A + +W + LT
Sbjct: 265 AWDHTARIRDAIETKPEEFVVVPVPRGPKGRGFIVVLAGLAIPKNAPHPEEAWKLIDYLT 324
Query: 263 SPE-----LKELGIEP 295
PE LKE+G P
Sbjct: 325 RPETQVKVLKEVGFFP 340
>ref|NP_337005.1| (NC_002755) hypothetical protein [Mycobacterium tuberculosis
CDC1551]
gb|AAK46819.1| (AE007089) hypothetical protein [Mycobacterium tuberculosis
CDC1551]
Length = 151
Score = 30.4 bits (67), Expect = 6.3
Identities = 17/57 (29%), Positives = 30/57 (51%), Gaps = 2/57 (3%)
Frame = +1
Query: 10 PFNPLDIQNEGRTTQANIWLASAKRQRLFK--DRTNSTTPQDTACAPDP*ARTFRPR 174
P +P + +E R++ +++ ASA + D ++ +P D C+P P R RPR
Sbjct: 73 PLSPASVSSESRSSPSSVSAASALVNCWARGSDCWSTGSPSDPPCSPRPRPRPRRPR 129
>ref|NP_241287.1| (NC_002570) N-acetylglucosamine-6-phosphate deacetylase [Bacillus
halodurans]
dbj|BAB04140.1| (AP001508) N-acetylglucosamine-6-phosphate deacetylase [Bacillus
halodurans]
Length = 397
Score = 30.4 bits (67), Expect = 6.3
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 344 GSLGIGGDFRHVKNGEAVLRIATPPANTLKNTXWVVNV 457
G+ +GG HVKNG+A+L+ T + LK V NV
Sbjct: 290 GTYELGGQTVHVKNGKALLQDGTLAGSVLKMNDAVKNV 327
>ref|NP_301938.1| (NC_002677) probable L-asparagine permease [Mycobacterium leprae]
emb|CAA22916.1| (AL035310) putative L-asparagine permease [Mycobacterium leprae]
emb|CAC31686.1| (AL583921) probable L-asparagine permease [Mycobacterium leprae]
Length = 505
Score = 30.4 bits (67), Expect = 6.3
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -3
Query: 270 SGEVREKRAFHEGNLLAYLLRPRPIRVRKVGTSGTKGTGLGIGCAGRV 127
+G + E+ +H+G L+PR +++ +G G GTGL +G GR+
Sbjct: 17 AGVLGEEAGYHKG------LKPRQLQM--IGIGGAIGTGLFLGAGGRL 56
>ref|NP_301937.1| (NC_002677) probable L-asparagine permease [Mycobacterium leprae]
pir||S72875 aromatic amino acid transport protein homolog aroP2 - Mycobacterium
leprae
gb|AAA17215.1| (U00017) aroP2; B2126_F2_85 [Mycobacterium leprae]
emb|CAC31685.1| (AL583921) probable L-asparagine permease [Mycobacterium leprae]
Length = 498
Score = 30.4 bits (67), Expect = 6.3
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -3
Query: 270 SGEVREKRAFHEGNLLAYLLRPRPIRVRKVGTSGTKGTGLGIGCAGRV 127
+G + E+ +H+G L+PR +++ +G G GTGL +G GR+
Sbjct: 17 AGVLGEEAGYHKG------LKPRQLQM--IGIGGAIGTGLFLGAGGRL 56
>pir||T45025 mucin MUC5B, tracheobronchial [imported] - human (fragment)
emb|CAA96577.1| (Z72496) mucin MUC5B [Homo sapiens]
Length = 3570
Score = 30.0 bits (66), Expect = 8.2
Identities = 19/48 (39%), Positives = 27/48 (55%), Gaps = 6/48 (12%)
Frame = +3
Query: 189 SP*SAEASTNTP-----TSSPHG-TLSSPSPHQNSRSWASNHHETVGT 314
+P SA +T+TP T++ HG +LS SPH +W S T+GT
Sbjct: 2608 TPSSALGTTHTPPVPNTTATTHGRSLSPSSPHTVRTAWTSATSGTLGT 2655
Score = 30.0 bits (66), Expect = 8.2
Identities = 19/48 (39%), Positives = 27/48 (55%), Gaps = 6/48 (12%)
Frame = +3
Query: 189 SP*SAEASTNTP-----TSSPHG-TLSSPSPHQNSRSWASNHHETVGT 314
+P SA +T+TP T++ HG +LS SPH +W S T+GT
Sbjct: 1381 TPSSALGTTHTPPVPNTTATTHGRSLSPSSPHTVRTAWTSATSGTLGT 1428
>gb|AAL25132.1|AF432503_1 (AF432503) cellulose synthase-like protein OsCslF2 [Oryza sativa]
Length = 889
Score = 30.0 bits (66), Expect = 8.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 375 CRKSPPIPREPFRYFCIHCKRYRRFRGGSMPNSLSSGEVREKRAFHE 235
CRK PR P YF + + Y+ G +P L S R +R + E
Sbjct: 237 CRKHCVEPRSPENYFAMKTQAYK----GGVPGELMSDHRRVRREYEE 279
>gb|AAL25131.1|AF432502_1 (AF432502) cellulose synthase-like protein OsCslF1 [Oryza sativa]
Length = 860
Score = 30.0 bits (66), Expect = 8.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 375 CRKSPPIPREPFRYFCIHCKRYRRFRGGSMPNSLSSGEVREKRAFHE 235
CRK PR P YF + + Y+ G +P L S R +R + E
Sbjct: 207 CRKHCVEPRSPENYFAMKTQAYK----GGVPGELMSDHRRVRREYEE 249
>gb|AAB35070.2| (S78869) mucin [Bos taurus]
Length = 504
Score = 30.0 bits (66), Expect = 8.2
Identities = 15/47 (31%), Positives = 18/47 (37%)
Frame = +3
Query: 213 TNTPTSSPHGTLSSPSPHQNSRSWASNHHETVGTFYSGCRNIERALW 353
T P P SP P ++ RSWAS+ H C R W
Sbjct: 10 TRWPEGDPGLQSLSPDPERSYRSWASSSHPGALGKLPSCPKTHRCAW 56
>pir||S60617 hypothetical protein 3 - human calicivirus (strain Melksham)
emb|CAA57463.1| (X81879) unnamed protein product [Calicivirus]
Length = 259
Score = 30.0 bits (66), Expect = 8.2
Identities = 17/48 (35%), Positives = 27/48 (55%), Gaps = 1/48 (2%)
Frame = +3
Query: 138 RTRSLSPYLSSPMCRLF-SP*SAEASTNTPTSSPHGTLSSPSPHQNSR 278
+ R+L PY+ + F +P S+ AS T ++ P G L S +P N+R
Sbjct: 196 QNRNLEPYMHGALQTAFVTPPSSRASDGTVSTVPKGVLDSWTPAFNTR 243
>ref|XP_095983.1| (XM_095983) hypothetical protein XP_095983 [Homo sapiens]
Length = 259
Score = 30.0 bits (66), Expect = 8.2
Identities = 15/43 (34%), Positives = 21/43 (47%)
Frame = +1
Query: 241 ERSLLPHLTRTQGVGHRTTTKPSVPFTVDAEISKGLSGNWWGL 369
++ LP LTR GV P +P + + E S G + WGL
Sbjct: 4 DKMQLPTLTRVSGVEAAEAPPPPLPRSTEPEGSPGAAAPQWGL 46
>ref|NP_193840.1| (NM_118226) putative protein [Arabidopsis thaliana]
pir||T04939 hypothetical protein F7J7.20 - Arabidopsis thaliana
emb|CAA17527.1| (AL021960) putative protein [Arabidopsis thaliana]
emb|CAB79108.1| (AL161554) putative protein [Arabidopsis thaliana]
Length = 249
Score = 30.0 bits (66), Expect = 8.2
Identities = 15/32 (46%), Positives = 19/32 (58%)
Frame = -3
Query: 339 RYFCIHCKRYRRFRGGSMPNSLSSGEVREKRA 244
RYFC +C+RY GG++ N G R KRA
Sbjct: 49 RYFCKNCRRYWT-HGGALRNIPIGGSSRAKRA 79
>ref|NP_012055.1| (NC_001140) Prospore Formation at Selected spindle poles; Pfs1p
[Saccharomyces cerevisiae]
sp|P38872|YHY5_YEAST HYPOTHETICAL 27.9 KD PROTEIN IN GND1-IKI1 INTERGENIC REGION
pir||S46685 hypothetical protein YHR185c - yeast (Saccharomyces cerevisiae)
gb|AAB68363.1| (U00030) Yhr185cp [Saccharomyces cerevisiae]
Length = 237
Score = 30.0 bits (66), Expect = 8.2
Identities = 23/78 (29%), Positives = 35/78 (44%)
Frame = +3
Query: 141 TRSLSPYLSSPMCRLFSP*SAEASTNTPTSSPHGTLSSPSPHQNSRSWASNHHETVGTFY 320
T S+SP LSS C P PHGTL P+P+ + NH E V
Sbjct: 76 TDSMSPQLSSINC-------------LPNLYPHGTLPLPNPYLS----YLNHIEKV---- 114
Query: 321 SGCRNIERALWELVGTSD 374
C++++ + W ++ S+
Sbjct: 115 -NCQDVKFSNWSVLHNSN 131
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: Mar 29, 2002 2:16 AM
Number of letters in database: 284,333,007
Number of sequences in database: 907,641
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 273,195,413
Number of Sequences: 907641
Number of extensions: 6135797
Number of successful extensions: 24541
Number of sequences better than 10.0: 112
Number of HSP's better than 10.0 without gapping: 22761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24299
length of database: 284,333,007
effective HSP length: 110
effective length of database: 184,492,497
effective search space used: 8117669868
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)