The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FgrNT3_10_C14.seq Fgr_10_C14 LENGTH:649bp ; DIRECTION:5
; CLONE:Fgr_10_C14 ; CLONELIB: n/a ; TISSU
(649 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
907,641 sequences; 284,333,007 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_587712.1| (NC_003421) putative succinate dehydrogena... 103 1e-21
sp|P41955|CYT1_CAEBR PROBABLE B-TYPE CYTOCHROME >gi|450581|... 77 2e-13
ref|NP_499283.1| (NM_066882) Succinate dehydrogenase cytoch... 75 5e-13
dbj|BAA11232.1| (D78157) cytochrome b-large subunit [Ascari... 72 5e-12
gb|AAB33776.1| succinate-ubiquinone reductase QPs1 subunit ... 70 2e-11
sp|P35720|C560_BOVIN SUCCINATE DEHYDROGENASE CYTOCHROME B56... 70 2e-11
pir||A45159 succinate dehydrogenase (ubiquinone) (EC 1.3.5.... 70 2e-11
gb|AAB07265.1| (U31241) integral membrane protein CII-3 [Cr... 69 3e-11
pir||I48085 integral membrane protein CII-3 - Chinese hamst... 68 8e-11
gb|AAH05779.1|AAH05779 (BC005779) Similar to RIKEN cDNA 061... 65 5e-10
ref|NP_079597.1| (NM_025321) RIKEN cDNA 0610010E03 [Mus mus... 65 7e-10
ref|NP_013836.1| (NC_001145) Hypothetical ORF; Ymr118cp [Sa... 65 7e-10
dbj|BAB28491.1| (AK012818) data source:SPTR, source key:P70... 64 9e-10
ref|NP_002992.1| (NM_003001) succinate dehydrogenase comple... 63 3e-09
ref|XP_082627.1| (XM_082627) CG6666 [Drosophila melanogaste... 62 3e-09
gb|AAF54602.1| (AE003690) CG6666 gene product [Drosophila m... 60 2e-08
ref|NP_044796.1| (NC_001823) succinate:ubiquinone oxidoredu... 57 1e-07
emb|CAA52088.1| (X73884) succinate dehydrogenase cytochrome... 55 5e-07
ref|NP_012781.1| (NC_001143) succinate dehydrogenase cytoch... 55 5e-07
gb|AAC31940.1| (AF081495) integral membrane protein CII-3b ... 50 1e-05
ref|XP_085581.1| (XM_085581) similar to succinate dehydroge... 49 3e-05
ref|XP_045183.2| (XM_045183) succinate dehydrogenase comple... 49 4e-05
ref|NP_355582.1| (NC_003062) AGR_C_4794p [Agrobacterium tum... 49 4e-05
ref|NP_298360.1| (NC_002488) succinate dehydrogenase, membr... 48 6e-05
ref|NP_533310.1| (NC_003304) succinate dehydrogenase cytoch... 48 6e-05
ref|NP_049321.1| (NC_002007) succinate:cytochrome c oxidore... 48 8e-05
gb|AAL92198.1| (AC115575) Succinate dehydrogenase cytochrom... 47 1e-04
gb|AAC17940.1| (AF007569) succinate dehydrogenase membrane ... 47 2e-04
gb|AAL60178.1|AF416764_1 (AF416764) succinate dehydrogenase... 46 2e-04
gb|AAF54585.1| (AE003690) CG6629 gene product [Drosophila m... 46 3e-04
ref|NP_054409.1| (NC_001660) ORF137 [Marchantia polymorpha]... 44 0.001
sp|Q59659|DHSC_PARDE SUCCINATE DEHYDROGENASE CYTOCHROME B-5... 44 0.001
ref|NP_539077.1| (NC_003317) SUCCINATE DEHYDROGENASE CYTOCH... 44 0.001
ref|NP_105177.1| (NC_002678) succinate dehydrogenase membra... 44 0.001
gb|AAB86570.1| (AF030969) unknown [Schistosoma mansoni] 43 0.002
ref|NP_387178.1| (NC_003047) PROBABLE SUCCINATE DEHYDROGENA... 42 0.004
ref|XP_092517.1| (XM_092517) hypothetical protein XP_092517... 42 0.005
gb|AAF21608.1|AF018287_2 (AF018287) SdhC; succinate dehydro... 40 0.023
ref|NP_062489.1| (NC_001677) succinate:cytochrome c oxidore... 40 0.023
gb|AAL36750.1|AF353999_30 (AF353999) succinate:cytochrome c... 38 0.067
gb|AAK77126.1|AF362730_1 (AF362730) succinate dehydrogenase... 38 0.067
dbj|BAB17027.1| (AB020752) gene_id:MTH16.1~pir||T05407~stro... 36 0.25
ref|NP_196522.1| (NM_120997) putative protein [Arabidopsis ... 36 0.25
ref|NP_194948.1| (NM_119373) putative protein [Arabidopsis ... 36 0.25
ref|NP_059349.1| (NC_000887) succinate:cytochrome c oxidore... 35 0.43
gb|AAK73693.1|AF362740_1 (AF362740) succinate dehydrogenase... 35 0.74
ref|NP_220518.1| (NC_000963) SUCCINATE DEHYDROGENASE CYTOCH... 35 0.74
ref|NP_066472.1| (NC_002572) succinate:cytochrome c oxidore... 33 2.2
gb|AAK73692.1|AF362739_1 (AF362739) succinate dehydrogenase... 33 2.2
ref|NP_524407.1| (NM_079683) neither inactivation nor after... 32 3.7
gb|AAB87898.1| (AF025813) rhodopsin 1 [Drosophila subobscura] 32 3.7
ref|NP_558528.1| (NC_003364) ABC-2 type transport system, m... 32 3.7
dbj|BAB17026.1| (AB006704) sulfate transporter-like protein... 32 3.7
ref|NP_484506.1| (NC_003272) hypothetical protein [Nostoc s... 32 3.7
gb|AAB31029.1| opsin Rh1 [Drosophila melanogaster, Peptide ... 32 3.7
gb|AAB31031.1| opsin Rh1 [Drosophila virilis, Peptide Parti... 32 3.7
ref|NP_196859.1| (NM_121358) sulfate transporter [Arabidops... 32 3.7
dbj|BAA23424.1| (AB008782) sulfate transporter [Arabidopsis... 32 3.7
gb|AAL17653.1| (AY055469) succinate dehydrogenase subunit C... 32 3.7
ref|NP_287238.1| (NC_002655) orf, hypothetical protein [Esc... 32 4.8
sp|P28678|OPS1_DROPS Opsin Rh1 (Outer R1-R6 photoreceptor c... 32 4.8
gb|AAF52717.1| (AE003622) CG9487 gene product [Drosophila m... 32 4.8
gb|AAF47376.1| (AE003468) CG6994 gene product [Drosophila m... 32 6.3
ref|NP_422323.1| (NC_002696) succinate dehydrogenase, cytoc... 32 6.3
ref|NP_220566.1| (NC_000963) PROTON/SODIUM-GLUTAMATE SYMPOR... 32 6.3
gb|AAL68229.1| (AY075397) LD28101p [Drosophila melanogaster] 32 6.3
ref|NP_415622.1| (NC_000913) orf, hypothetical protein [Esc... 31 8.2
ref|NP_250272.1| (NC_002516) succinate dehydrogenase (C sub... 31 8.2
sp|P46018|KPB2_RABIT Phosphorylase B kinase alpha regulator... 31 8.2
gb|AAB31030.1| opsin Rh1 [Drosophila simulans, Peptide Part... 31 8.2
>ref|NP_587712.1| (NC_003421) putative succinate dehydrogenase cytochrome b subunit
precursor. [Schizosaccharomyces pombe]
pir||T41322 probable succinate dehydrogenase cytochrome b su bunit precursor -
fission yeast (Schizosaccharomyces pombe)
emb|CAA20917.1| (AL031603) putative succinate dehydrogenase cytochrome b subunit
precursor. [Schizosaccharomyces pombe]
Length = 180
Score = 103 bits (258), Expect = 1e-21
Identities = 49/139 (35%), Positives = 85/139 (60%)
Frame = +3
Query: 180 RATGSVKVSQEDGHQILVNQRLNRPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGF 359
R+ + ++Q + + L +QR++RP SPHL IY+ + TW+ SS +RITGC ++ TLY F
Sbjct: 35 RSIATEHLTQTEANSRLASQRVHRPNSPHLTIYEPQLTWYLSSL-HRITGCVVAGTLYAF 93
Query: 360 SIAYLAAPVVGLHLESLSIASFVAGLPLAVKGGLKFTLGFPFVYHAISGVKHLLYDAGKG 539
++ YL AP+ G L++ +I+ + +P +K KF + +P +H +G++HL++D K
Sbjct: 94 AMGYLVAPLAGYSLDTATISGLIQQVPTWIKVPAKFVISYPLTFHIFNGIRHLIWDTTKE 153
Query: 540 FAKSTIIQADKYVWAASVL 596
+ + + V A SVL
Sbjct: 154 LSLKGVYRTGYAVLALSVL 172
>sp|P41955|CYT1_CAEBR PROBABLE B-TYPE CYTOCHROME
gb|AAA20078.1| (L26546) CDS structure deduced from alignment with C. elegans cyt-1
gene [Caenorhabditis briggsae]
Length = 184
Score = 76.6 bits (187), Expect = 2e-13
Identities = 48/166 (28%), Positives = 86/166 (50%), Gaps = 3/166 (1%)
Frame = +3
Query: 135 SKSALAAGISTSSPTRATGSVKVSQEDGHQILVNQR-LNRPVSPHLAIYKLEQTWFGSSA 311
++SA++ TS T++ + Q+ G + L QR + RP++PHL IY+ + TW S
Sbjct: 14 ARSAISRSFGTSVVTKSEAKTPI-QKFGWEYLKKQRDMKRPIAPHLTIYQPQLTWM-LSG 71
Query: 312 WNRITGCTLSATLYGFSIAYLAAPVVGLHLESLSIASFVAG--LPLAVKGGLKFTLGFPF 485
++RI+GC ++ TL + + P L+ + ++ G LP AV K+ + FP
Sbjct: 72 FHRISGCVMAGTLLVGGLGFAVLP-----LDFTTFVEYIRGWNLPCAVTAVFKYIIAFPI 126
Query: 486 VYHAISGVKHLLYDAGKGFAKSTIIQADKYVWAASVLGAIGLVAFL 623
++H ++G++ L +D KG I Q K W + A+ +A +
Sbjct: 127 IFHTLNGIRFLGFDLAKGV--DNIGQVYKSGWLVFGVSAVIALAIV 170
>ref|NP_499283.1| (NM_066882) Succinate dehydrogenase cytochrome b chain
[Caenorhabditis elegans]
sp|P41956|CYT1_CAEEL PROBABLE B-TYPE CYTOCHROME
pir||B53189 cytochrome b560 homolog precursor - Caenorhabditis elegans
gb|AAA20081.1| (L26545) CYT-1 [Caenorhabditis elegans]
emb|CAA82572.1| (Z29443) contains similarity to Pfam domain: PF01127 (Succinate
dehydrogenase cytochrome b subunit), Score=187.0,
E-value=1e-52, N=1~cDNA EST yk449h7.5 comes from this
gene~cDNA EST yk473e2.5 comes from this gene~cDNA EST
yk567b11.3 comes from this gen>
Length = 182
Score = 75.1 bits (183), Expect = 5e-13
Identities = 48/166 (28%), Positives = 87/166 (51%), Gaps = 3/166 (1%)
Frame = +3
Query: 135 SKSALAAGISTSSPTRATGSVKVSQEDGHQILVNQRL-NRPVSPHLAIYKLEQTWFGSSA 311
++S+++ TS T++ + Q+ G + L+ QR NRP++PHL +Y+ + TW S
Sbjct: 14 ARSSISRSFGTSIVTKSEAKTPI-QKFGWEYLLKQRSKNRPIAPHLTVYQPQLTWM-LSG 71
Query: 312 WNRITGCTLSATLYGFSIAYLAAPVVGLHLESLSIASFVA--GLPLAVKGGLKFTLGFPF 485
++RI+GC ++ TL I + P + + F+ LP AV K+ + FP
Sbjct: 72 FHRISGCVMAGTLLVGGIGFAVLP-----FDFTAFVDFIRSWNLPCAVTAVFKYIIAFPI 126
Query: 486 VYHAISGVKHLLYDAGKGFAKSTIIQADKYVWAASVLGAIGLVAFL 623
++H ++G++ L +D KG + + Q K + S L AI +A +
Sbjct: 127 IFHTLNGIRFLGFDLAKGV--NNVGQIYKSGYLVSGLSAILALAIV 170
>dbj|BAA11232.1| (D78157) cytochrome b-large subunit [Ascaris suum]
Length = 188
Score = 71.6 bits (174), Expect = 5e-12
Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 9/153 (5%)
Frame = +3
Query: 186 TGSVKVSQED------GHQILVNQR-LNRPVSPHLAIYKLEQTWFGSSAWNRITGCTLSA 344
T + +VS E G L++QR L RP++PHL IYK + TW S +R+TGC ++
Sbjct: 26 TSAARVSAEKTPIQVWGWDYLMSQRALKRPIAPHLTIYKPQMTWMVSGL-HRVTGCAMAG 84
Query: 345 TLYGFSIAYLAAPVVGLHLESLSIASFVAGL--PLAVKGGLKFTLGFPFVYHAISGVKHL 518
TL + + P L+ + F+ GL P + KF + FP +H ++G++ +
Sbjct: 85 TLLIGGVGFSVLP-----LDFTTFVEFMRGLGMPWVILDTFKFIIAFPIAFHTLNGIRFI 139
Query: 519 LYDAGKGFAKSTIIQADKYVWAASVLGAIGLVA 617
+D KG +I Y A VLG L++
Sbjct: 140 GFDMAKGTDIPSI-----YSGAYLVLGLAALIS 167
>gb|AAB33776.1| succinate-ubiquinone reductase QPs1 subunit [cattle, heart, Peptide
Mitochondrial, 140 aa]
Length = 140
Score = 70.1 bits (170), Expect = 2e-11
Identities = 50/131 (38%), Positives = 69/131 (52%), Gaps = 3/131 (2%)
Frame = +3
Query: 234 NQRLNRPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGFSIAYLAAP-VVGLHLESL 410
N LNRP+SPH++IY S +R TG LSA + F ++ L P HLE
Sbjct: 16 NTTLNRPLSPHISIYGWSLP-MAMSICHRGTGIALSAGVSLFGLSALLVPGSFESHLE-- 72
Query: 411 SIASFVAGLPL--AVKGGLKFTLGFPFVYHAISGVKHLLYDAGKGFAKSTIIQADKYVWA 584
FV L L A+ KF L FP +YH +G++HL++D GKG S + Q+ V
Sbjct: 73 ----FVKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLTISQLHQSGVAVLV 128
Query: 585 ASVLGAIGLVA 617
+VL ++GL A
Sbjct: 129 LTVLSSVGLAA 139
>sp|P35720|C560_BOVIN SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT, MITOCHONDRIAL
PRECURSOR (QPS1) (CII-3) (SUCCINATE DEHYDROGENASE
COMPLEX SUBUNIT C)
gb|AAB32390.1| (S74803) succinate-ubiquinone oxidoreductase complex II
membrane-intrinsic subunit; QPs-1 [Bos taurus]
prf||2024211A succinate ubiquinone oxidoreductase [Bos taurus]
Length = 169
Score = 70.1 bits (170), Expect = 2e-11
Identities = 50/131 (38%), Positives = 69/131 (52%), Gaps = 3/131 (2%)
Frame = +3
Query: 234 NQRLNRPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGFSIAYLAAP-VVGLHLESL 410
N LNRP+SPH++IY S +R TG LSA + F ++ L P HLE
Sbjct: 45 NTTLNRPLSPHISIYGWSLP-MAMSICHRGTGIALSAGVSLFGLSALLVPGSFESHLE-- 101
Query: 411 SIASFVAGLPL--AVKGGLKFTLGFPFVYHAISGVKHLLYDAGKGFAKSTIIQADKYVWA 584
FV L L A+ KF L FP +YH +G++HL++D GKG S + Q+ V
Sbjct: 102 ----FVKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLTISQLHQSGVAVLV 157
Query: 585 ASVLGAIGLVA 617
+VL ++GL A
Sbjct: 158 LTVLSSVGLAA 168
>pir||A45159 succinate dehydrogenase (ubiquinone) (EC 1.3.5.1) cytochrome b560 -
bovine
gb|AAA21608.1| (M76747) cytochrome b-560 [Bos taurus]
Length = 132
Score = 70.1 bits (170), Expect = 2e-11
Identities = 50/131 (38%), Positives = 69/131 (52%), Gaps = 3/131 (2%)
Frame = +3
Query: 234 NQRLNRPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGFSIAYLAAP-VVGLHLESL 410
N LNRP+SPH++IY S +R TG LSA + F ++ L P HLE
Sbjct: 8 NTTLNRPLSPHISIYGWSLP-MAMSICHRGTGIALSAGVSLFGLSALLVPGSFESHLE-- 64
Query: 411 SIASFVAGLPL--AVKGGLKFTLGFPFVYHAISGVKHLLYDAGKGFAKSTIIQADKYVWA 584
FV L L A+ KF L FP +YH +G++HL++D GKG S + Q+ V
Sbjct: 65 ----FVKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLTISQLHQSGVAVLV 120
Query: 585 ASVLGAIGLVA 617
+VL ++GL A
Sbjct: 121 LTVLSSVGLAA 131
>gb|AAB07265.1| (U31241) integral membrane protein CII-3 [Cricetulus griseus]
Length = 169
Score = 69.3 bits (168), Expect = 3e-11
Identities = 48/130 (36%), Positives = 72/130 (54%), Gaps = 2/130 (1%)
Frame = +3
Query: 234 NQRLNRPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLESLS 413
N RPVSPHL IY+ S +R TG LS G S+ L+A ++ + ES
Sbjct: 45 NTSSKRPVSPHLTIYRWSLPMV-MSICHRGTGVALSG---GVSLFGLSALLLPGNFESYL 100
Query: 414 IASFVAGLPL--AVKGGLKFTLGFPFVYHAISGVKHLLYDAGKGFAKSTIIQADKYVWAA 587
+ F+ L L A+ KF L FP +YH+++G++HL++D GKG + S + Q+ V
Sbjct: 101 M--FIKSLCLGPALIHSAKFVLVFPLMYHSLNGIRHLIWDLGKGLSISQVYQSGVAVLML 158
Query: 588 SVLGAIGLVA 617
+VL ++GL A
Sbjct: 159 AVLSSVGLAA 168
>pir||I48085 integral membrane protein CII-3 - Chinese hamster (fragment)
Length = 171
Score = 67.8 bits (164), Expect = 8e-11
Identities = 47/128 (36%), Positives = 71/128 (54%), Gaps = 2/128 (1%)
Frame = +3
Query: 234 NQRLNRPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLESLS 413
N RPVSPHL IY+ S +R TG LS G S+ L+A ++ + ES
Sbjct: 49 NTSSKRPVSPHLTIYRWSLPMV-MSICHRGTGVALSG---GVSLFGLSALLLPGNFESYL 104
Query: 414 IASFVAGLPL--AVKGGLKFTLGFPFVYHAISGVKHLLYDAGKGFAKSTIIQADKYVWAA 587
+ F+ L L A+ KF L FP +YH+++G++HL++D GKG + S + Q+ V
Sbjct: 105 M--FIKSLCLGPALIHSAKFVLVFPLMYHSLNGIRHLIWDLGKGLSISQVYQSGVAVLML 162
Query: 588 SVLGAIGL 611
+VL ++GL
Sbjct: 163 AVLSSVGL 170
>gb|AAH05779.1|AAH05779 (BC005779) Similar to RIKEN cDNA 0610010E03 gene [Mus musculus]
Length = 169
Score = 65.1 bits (157), Expect = 5e-10
Identities = 48/130 (36%), Positives = 68/130 (51%), Gaps = 2/130 (1%)
Frame = +3
Query: 234 NQRLNRPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLES-- 407
N NRP+SPHL IYK S +R +G LS G S+ L+A V+ + ES
Sbjct: 45 NTSSNRPLSPHLTIYKWSLP-MALSVCHRGSGIALSG---GVSLFGLSALVLPGNFESYL 100
Query: 408 LSIASFVAGLPLAVKGGLKFTLGFPFVYHAISGVKHLLYDAGKGFAKSTIIQADKYVWAA 587
+ + S G L KF L FP +YH+++G++HLL+D GKG A + + V
Sbjct: 101 MFVKSLCLGPTLIYSA--KFVLVFPLMYHSLNGIRHLLWDLGKGLAIPQVWLSGVAVVVL 158
Query: 588 SVLGAIGLVA 617
+VL + GL A
Sbjct: 159 AVLSSGGLAA 168
>ref|NP_079597.1| (NM_025321) RIKEN cDNA 0610010E03 [Mus musculus]
dbj|BAB22116.1| (AK002459) data source:SPTR, source key:P70097,
evidence:ISS~homolog to INTEGRAL MEMBRANE PROTEIN
CII-3~putative [Mus musculus]
Length = 169
Score = 64.7 bits (156), Expect = 7e-10
Identities = 52/171 (30%), Positives = 84/171 (48%), Gaps = 4/171 (2%)
Frame = +3
Query: 117 FFAQNISKSALAAGISTSSPTRATGSVKVSQEDGHQIL--VNQRLNRPVSPHLAIYKLEQ 290
F +++S+ L A ++ R + + ++ + N NRP+SPHL IYK
Sbjct: 4 FLLRHVSRHCLRAHLNAQRCIRNAAPLGTTAKEEMERFWKKNTSSNRPLSPHLTIYKWSL 63
Query: 291 TWFGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLES--LSIASFVAGLPLAVKGGLK 464
S +R +G LS G S+ L+A ++ + ES + + S G L K
Sbjct: 64 P-MALSVCHRGSGIALSG---GVSLFGLSALLLPGNFESYLMFVKSLCLGPTLIYSA--K 117
Query: 465 FTLGFPFVYHAISGVKHLLYDAGKGFAKSTIIQADKYVWAASVLGAIGLVA 617
F L FP +YH+++G++HLL+D GKG A + + V +VL + GL A
Sbjct: 118 FVLVFPLMYHSLNGIRHLLWDLGKGLAIPQVWLSGVAVVVLAVLSSGGLAA 168
>ref|NP_013836.1| (NC_001145) Hypothetical ORF; Ymr118cp [Saccharomyces cerevisiae]
sp|Q04487|YM07_YEAST Putative succinate dehydrogenase cytochrome B subunit,
mitochondrial precursor
pir||S54580 probable membrane protein YMR118c - yeast (Saccharomyces
cerevisiae)
emb|CAA89756.1| (Z49702) unknown [Saccharomyces cerevisiae]
Length = 196
Score = 64.7 bits (156), Expect = 7e-10
Identities = 38/139 (27%), Positives = 71/139 (50%), Gaps = 1/139 (0%)
Frame = +3
Query: 204 SQEDGHQILVNQRLNRPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGFSIAYLAAP 383
S ++LV+QR RP+SPHL +Y+ E +W+ SS +RI+G L+ Y F+I
Sbjct: 58 SSNKEEELLVSQRKKRPISPHLTVYEPEMSWYLSSL-HRISGVLLALGFYAFTITLGVTT 116
Query: 384 VVGLHLESLSIAS-FVAGLPLAVKGGLKFTLGFPFVYHAISGVKHLLYDAGKGFAKSTII 560
++G+ + + +P + K + + F +H +G++HL++D G +I
Sbjct: 117 IMGMDTTFQDLNKWYHEKMPKWSQWVAKGSAAYLFAFHFGNGIRHLIWDMGYELTNRGVI 176
Query: 561 QADKYVWAASVLGAIGLVA 617
+ V A +++ L+A
Sbjct: 177 KTGSIVLAGTLVLGTYLLA 195
>dbj|BAB28491.1| (AK012818) data source:SPTR, source key:P70097,
evidence:ISS~homolog to INTEGRAL MEMBRANE PROTEIN
CII-3~putative [Mus musculus]
Length = 169
Score = 64.3 bits (155), Expect = 9e-10
Identities = 52/171 (30%), Positives = 84/171 (48%), Gaps = 4/171 (2%)
Frame = +3
Query: 117 FFAQNISKSALAAGISTSSPTRATGSVKVSQEDGHQIL--VNQRLNRPVSPHLAIYKLEQ 290
F +++S+ L A ++ R + + ++ + N NRP+SPHL IYK
Sbjct: 4 FLLRHVSRHCLRAHLNAQLCIRNAAPLGTTAKEEMERFWKKNTSSNRPLSPHLTIYKWSL 63
Query: 291 TWFGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLES--LSIASFVAGLPLAVKGGLK 464
S +R +G LS G S+ L+A ++ + ES + + S G L K
Sbjct: 64 P-MALSVCHRGSGIALSG---GVSLFGLSALLLPGNFESYLMFVKSLCLGPTLIYSA--K 117
Query: 465 FTLGFPFVYHAISGVKHLLYDAGKGFAKSTIIQADKYVWAASVLGAIGLVA 617
F L FP +YH+++G++HLL+D GKG A + + V +VL + GL A
Sbjct: 118 FVLVFPLMYHSLNGIRHLLWDLGKGLAIPQVWLSGVAVVVLAVLSSGGLAA 168
>ref|NP_002992.1| (NM_003001) succinate dehydrogenase complex, subunit C precursor;
Succinate dehydrogenase complex, subunit C, integral
membrane protein,; succinate-ubiquinone oxidoreducatase
cytochrome B large subunit [Homo sapiens]
ref|XP_042462.1| (XM_042462) similar to succinate dehydrogenase complex, subunit C,
integral membrane protein, 15kD (H. sapiens) [Homo
sapiens]
sp|Q99643|C560_HUMAN Succinate dehydrogenase cytochrome B560 subunit, mitochondrial
precursor (QPS1) (CII-3) (Succinate dehydrogenase
complex subunit C) (Succinate-ubiquinone oxidoreductase
cytochrome B large subunit) (CYBL)
gb|AAB41838.1| (U57877) QPS1 [Homo sapiens]
gb|AAC27993.1| (AF039594) succinate dehydrogenase subunit C [Homo sapiens]
dbj|BAA31998.1| (D49737) cytochrome b large subunit of complex II [Homo sapiens]
gb|AAH20808.1|AAH20808 (BC020808) succinate dehydrogenase complex, subunit C, integral
membrane protein, 15kD [Homo sapiens]
Length = 169
Score = 62.8 bits (151), Expect = 3e-09
Identities = 42/124 (33%), Positives = 62/124 (49%)
Frame = +3
Query: 246 NRPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLESLSIASF 425
NRP+SPH+ IY S +R TG LSA + F ++ L P G L +
Sbjct: 49 NRPLSPHITIYSWSLP-MAMSICHRGTGIALSAGVSLFGMSALLLP--GNFESYLELVKS 105
Query: 426 VAGLPLAVKGGLKFTLGFPFVYHAISGVKHLLYDAGKGFAKSTIIQADKYVWAASVLGAI 605
+ P + KF L FP +YH +G++HL++D GKG + Q+ V +VL ++
Sbjct: 106 LCLGPALIHTA-KFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSM 164
Query: 606 GLVA 617
GL A
Sbjct: 165 GLAA 168
>ref|XP_082627.1| (XM_082627) CG6666 [Drosophila melanogaster]
gb|AAL49350.1| (AY071728) RH44771p [Drosophila melanogaster]
Length = 171
Score = 62.4 bits (150), Expect = 3e-09
Identities = 53/166 (31%), Positives = 80/166 (47%), Gaps = 8/166 (4%)
Frame = +3
Query: 132 ISKSALAAGISTSSPTRATG----SVKVSQEDGHQILVNQRLNRPVSPHLAIYKLEQTWF 299
I AL G+ ++ +R SV +Q+D N+RL R +SPHL IY+ + T
Sbjct: 9 IRSPALRQGLQMAAASRPVSMKVVSVAETQKDESFFEKNERLGRELSPHLTIYQPQLTSM 68
Query: 300 GSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLESLSIASFVAGLPL--AVKGGLKFTL 473
S +R TG L ++G + L + H ++ V GL L A LKF +
Sbjct: 69 -LSICHRGTGLALGVGVWGLGLGALISSHDISHYVTM-----VEGLQLSGATLTALKFII 122
Query: 474 GFPFVYHAISGVKHLLYDAGKGFAKSTIIQADKYVWAAS--VLGAI 605
+P YH +G++HLL+D G+ F K + + Y A+ VL AI
Sbjct: 123 AYPAGYHTANGIRHLLWDTGR-FLKIKEVYSTGYAMVATSFVLSAI 167
>gb|AAF54602.1| (AE003690) CG6666 gene product [Drosophila melanogaster]
Length = 152
Score = 60.1 bits (144), Expect = 2e-08
Identities = 48/142 (33%), Positives = 71/142 (49%), Gaps = 4/142 (2%)
Frame = +3
Query: 192 SVKVSQEDGHQILVNQRLNRPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGFSIAY 371
SV +Q+D N+RL R +SPHL IY+ + T S +R TG L ++G +
Sbjct: 14 SVAETQKDESFFEKNERLGRELSPHLTIYQPQLTSM-LSICHRGTGLALGVGVWGLGLGA 72
Query: 372 LAAPVVGLHLESLSIASFVAGLPL--AVKGGLKFTLGFPFVYHAISGVKHLLYDAGKGFA 545
L + H ++ V GL L A LKF + +P YH +G++HLL+D G+ F
Sbjct: 73 LISSHDISHYVTM-----VEGLQLSGATLTALKFIIAYPAGYHTANGIRHLLWDTGR-FL 126
Query: 546 KSTIIQADKYVWAAS--VLGAI 605
K + + Y A+ VL AI
Sbjct: 127 KIKEVYSTGYAMVATSFVLSAI 148
>ref|NP_044796.1| (NC_001823) succinate:ubiquinone oxidoreductase subunit 3
[Reclinomonas americana]
sp|P80481|C560_RECAM SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT (SUCCINATE
DEHYDROGENASE, SUBUNIT III)
pir||S78178 succinate dehydrogenase (ubiquinone) (EC 1.3.5.1) chain 3 -
Reclinomonas americana (ATCC 50394) mitochondrion
gb|AAD11911.1| (AF007261) succinate:ubiquinone oxidoreductase subunit 3
[Reclinomonas americana]
Length = 144
Score = 57.4 bits (137), Expect = 1e-07
Identities = 39/106 (36%), Positives = 57/106 (52%), Gaps = 4/106 (3%)
Frame = +3
Query: 228 LVNQRLNRPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLES 407
++N +NRP+SPHL IYKL+ T S ++RITG L+ TL F L ++ HL S
Sbjct: 14 IINMNINRPISPHLTIYKLQIT-NTLSIFHRITGGVLALTLCFF---ILILKMLNFHLSS 69
Query: 408 LSIASFVAGLPLAVKGGLKFTLGFPFV----YHAISGVKHLLYDAG 533
+ S L G L + F + YH +G++HL++DAG
Sbjct: 70 YAFYSIAYTLN-QYSGFLFIAISFFLLLFIFYHLFAGLRHLVWDAG 114
>emb|CAA52088.1| (X73884) succinate dehydrogenase cytochrome b subunit
[Saccharomyces cerevisiae]
Length = 198
Score = 55.1 bits (131), Expect = 5e-07
Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Frame = +3
Query: 222 QILVNQRLNRPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHL 401
QIL QR RP+SPHL IY+ + TW+ SS +RI+ + Y F+I + + ++GL L
Sbjct: 66 QILNKQRAKRPISPHLTIYQPQLTWYLSSL-HRISLVLMGLGFYLFTILFGVSGLLGLGL 124
Query: 402 ESLSIAS-FVAGLPLAVKGGLKFTLGFPFVYHAISGVKHLLYDAGK 536
+ +++ + + +K + + F H ++HL++D K
Sbjct: 125 TTEKVSNWYHQKFSKITEWSIKGSFAYLFAIHYGGAIRHLIWDTAK 170
>ref|NP_012781.1| (NC_001143) succinate dehydrogenase cytochrome b; Sdh3p
[Saccharomyces cerevisiae]
sp|P33421|SDH3_YEAST SUCCINATE DEHYDROGENASE CYTOCHROME B SUBUNIT, MITOCHONDRIAL
PRECURSOR
pir||S37970 succinate dehydrogenase (EC 1.3.99.1) cytochrome b precursor -
yeast (Saccharomyces cerevisiae)
emb|CAA80957.1| (Z25464) succinate dehydrogenase cytochrome b subunit
[Saccharomyces cerevisiae]
emb|CAA81982.1| (Z28141) ORF YKL141w [Saccharomyces cerevisiae]
Length = 198
Score = 55.1 bits (131), Expect = 5e-07
Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Frame = +3
Query: 222 QILVNQRLNRPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHL 401
QIL QR RP+SPHL IY+ + TW+ SS +RI+ + Y F+I + + ++GL L
Sbjct: 66 QILNKQRAKRPISPHLTIYQPQLTWYLSSL-HRISLVLMGLGFYLFTILFGVSGLLGLGL 124
Query: 402 ESLSIAS-FVAGLPLAVKGGLKFTLGFPFVYHAISGVKHLLYDAGK 536
+ +++ + + +K + + F H ++HL++D K
Sbjct: 125 TTEKVSNWYHQKFSKITEWSIKGSFAYLFAIHYGGAIRHLIWDTAK 170
>gb|AAC31940.1| (AF081495) integral membrane protein CII-3b [Homo sapiens]
Length = 135
Score = 50.4 bits (119), Expect = 1e-05
Identities = 39/123 (31%), Positives = 58/123 (46%), Gaps = 3/123 (2%)
Frame = +3
Query: 258 SPHLAIYKLEQTW---FGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLESLSIASFV 428
SP L I + W S +R TG LSA + F ++ L P G L + +
Sbjct: 19 SPQLCI----RNWSLPMAMSICHRGTGIALSAGVSLFGMSALLLP--GNFESYLELVKSL 72
Query: 429 AGLPLAVKGGLKFTLGFPFVYHAISGVKHLLYDAGKGFAKSTIIQADKYVWAASVLGAIG 608
P + KF L FP +YH +G++HL++D GKG + Q+ V +VL ++G
Sbjct: 73 CLGPALIHTA-KFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMG 131
Query: 609 LVA 617
L A
Sbjct: 132 LAA 134
>ref|XP_085581.1| (XM_085581) similar to succinate dehydrogenase complex, subunit C,
integral membrane protein, 15kD (H. sapiens) [Homo
sapiens]
Length = 135
Score = 49.3 bits (116), Expect = 3e-05
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Frame = +3
Query: 258 SPHLAIYKLEQTW---FGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLESLSIASFV 428
SP L I + W S +R TG LSA G S+ + A ++ + ES
Sbjct: 19 SPQLCI----RNWSLPMAMSICHRGTGIALSA---GVSLFGMLAVLLPGNFESYLELVKS 71
Query: 429 AGLPLAVKGGLKFTLGFPFVYHAISGVKHLLYDAGKGFAKSTIIQADKYVWAASVLGAIG 608
L A+ KF L FP +YH +G++HL++D GKG + Q+ V +VL ++G
Sbjct: 72 LCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMG 131
Query: 609 LVA 617
L A
Sbjct: 132 LAA 134
>ref|XP_045183.2| (XM_045183) succinate dehydrogenase complex, subunit C precursor
[Homo sapiens]
Length = 116
Score = 48.9 bits (115), Expect = 4e-05
Identities = 35/104 (33%), Positives = 53/104 (50%)
Frame = +3
Query: 306 SAWNRITGCTLSATLYGFSIAYLAAPVVGLHLESLSIASFVAGLPLAVKGGLKFTLGFPF 485
S +R TG LSA G S+ + A ++ + ES L A+ KF L FP
Sbjct: 15 SICHRGTGIALSA---GVSLFGMLAVLLPGNFESYLELVKSLCLGPALIHTAKFALVFPL 71
Query: 486 VYHAISGVKHLLYDAGKGFAKSTIIQADKYVWAASVLGAIGLVA 617
+YH +G++HL++D GKG + Q+ V +VL ++GL A
Sbjct: 72 MYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAA 115
>ref|NP_355582.1| (NC_003062) AGR_C_4794p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK88367.1| (AE008178) AGR_C_4794p [Agrobacterium tumefaciens str. C58
(Cereon)]
Length = 165
Score = 48.9 bits (115), Expect = 4e-05
Identities = 38/125 (30%), Positives = 59/125 (46%), Gaps = 2/125 (1%)
Frame = +3
Query: 225 ILVNQRLNRPVSPHLAIYKLEQTWFGSSAWNRITGCTL--SATLYGFSIAYLAAPVVGLH 398
++ N NRP+SPHL IYK T S +RITG L L + + LA+
Sbjct: 35 LMANVTNNRPLSPHLQIYKPIPTMVASIV-HRITGGALYFGTLLVAWWLIALASGPAYYD 93
Query: 399 LESLSIASFVAGLPLAVKGGLKFTLGFPFVYHAISGVKHLLYDAGKGFAKSTIIQADKYV 578
+ ++ + + L L G + L V+H + G++H ++D G GF K + K
Sbjct: 94 WVNWAMGTIIGRLILI---GYTWAL----VHHMLGGLRHFMWDLGHGFDKHFTTKLAKAS 146
Query: 579 WAASV 593
W AS+
Sbjct: 147 WVASI 151
>ref|NP_298360.1| (NC_002488) succinate dehydrogenase, membrane anchor subunit
[Xylella fastidiosa 9a5c]
pir||C82728 succinate dehydrogenase, membrane anchor subunit XF1070 [imported]
- Xylella fastidiosa (strain 9a5c)
gb|AAF83880.1|AE003943_11 (AE003943) succinate dehydrogenase, membrane anchor subunit
[Xylella fastidiosa 9a5c]
Length = 142
Score = 48.1 bits (113), Expect = 6e-05
Identities = 38/123 (30%), Positives = 62/123 (49%)
Frame = +3
Query: 249 RPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLESLSIASFV 428
RP+SPHL +Y+ + +S +R TG LS + +AA ++ L + + F
Sbjct: 17 RPLSPHLQVYRWQMQMV-TSILHRATGVFLS-----LGVLVIAAGLLALMFGAATWDYFR 70
Query: 429 AGLPLAVKGGLKFTLGFPFVYHAISGVKHLLYDAGKGFAKSTIIQADKYVWAASVLGAIG 608
+ L L + F YH +G++H+ D G GFA S+ +++ W ASVLG+I
Sbjct: 71 SCLNLWYGQCFLLVWTWCFGYHLCNGIRHIAQDFGCGFAISSFVRSS---W-ASVLGSIV 126
Query: 609 LVA 617
+ A
Sbjct: 127 ITA 129
>ref|NP_533310.1| (NC_003304) succinate dehydrogenase cytochrome B-556 subunit
[Agrobacterium tumefaciens str. C58 (U. Washington)]
gb|AAL43626.1| (AE009211) succinate dehydrogenase cytochrome B-556 subunit
[Agrobacterium tumefaciens str. C58 (U. Washington)]
Length = 130
Score = 48.1 bits (113), Expect = 6e-05
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Frame = +3
Query: 228 LVNQRLNRPVSPHLAIYKLEQTWFGSSAWNRITGCTL--SATLYGFSIAYLAAPVVGLHL 401
+ N NRP+SPHL IYK T S +RITG L L + + LA+
Sbjct: 1 MANVTNNRPLSPHLQIYKPIPTMVASIV-HRITGGALYFGTLLVAWWLIALASGPAYYDW 59
Query: 402 ESLSIASFVAGLPLAVKGGLKFTLGFPFVYHAISGVKHLLYDAGKGFAKSTIIQADKYVW 581
+ ++ + + L L G + L V+H + G++H ++D G GF K + K W
Sbjct: 60 VNWAMGTIIGRLILI---GYTWAL----VHHMLGGLRHFMWDLGHGFDKHFTTKLAKASW 112
Query: 582 AASV 593
AS+
Sbjct: 113 VASI 116
>ref|NP_049321.1| (NC_002007) succinate:cytochrome c oxidoreductase subunit 3
[Porphyra purpurea]
sp|P80478|C560_PORPU SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT (SUCCINATE
DEHYDROGENASE, SUBUNIT III)
pir||T11245 probable succinate dehydrogenase (ubiquinone) (EC 1.3.5.1) chain 3
- red alga (Porphyra purpurea) mitochondrion
gb|AAD03124.1| (AF114794) succinate:cytochrome c oxidoreductase subunit 3
[Porphyra purpurea]
Length = 125
Score = 47.8 bits (112), Expect = 8e-05
Identities = 33/112 (29%), Positives = 56/112 (49%), Gaps = 5/112 (4%)
Frame = +3
Query: 243 LNRPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLESLSIAS 422
+NRP+SPHL IY +++ S W+RI+G + +A+P + L L + S S
Sbjct: 4 INRPISPHLTIYNTQKSSL-FSIWHRISGVAM--------FTLIASPPLFLKLATFSYKS 54
Query: 423 F-VAGLPL----AVKGGLKFTLGFPFVYHAISGVKHLLYDAGKGFAKSTIIQ 563
F + L L + + F+YH I+G++H L+D+ +II+
Sbjct: 55 FNILDLMLNNSSLILPWFIVIISVIFLYHIINGIRHFLWDSVVNVNTESIIK 106
>gb|AAL92198.1| (AC115575) Succinate dehydrogenase cytochrome B560 subunit,
mitochondrial precursor [Dictyostelium discoideum]
Length = 192
Score = 47.4 bits (111), Expect = 1e-04
Identities = 39/121 (32%), Positives = 57/121 (46%), Gaps = 2/121 (1%)
Frame = +3
Query: 249 RPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLESLSIASFV 428
+P SPHL IYK S +R TG L+ + G + L AP +H L +
Sbjct: 71 QPTSPHLTIYKFPLPAV-MSIMHRATGICLALGITGLAGVTLFAPHDAIHYIQLLHTQYP 129
Query: 429 AGLPLAVKGGLKFTLGFPFVYHAISGVKHLLYD-AGKGFAKSTIIQADKYVWA-ASVLGA 602
A + A KF + P YH +GV+H+++D KG + S I + K + A +VL
Sbjct: 130 ALVYPA-----KFAVALPLTYHFCTGVRHIIWDETVKGLSISQIESSGKVLLAVVAVLST 184
Query: 603 I 605
I
Sbjct: 185 I 185
>gb|AAC17940.1| (AF007569) succinate dehydrogenase membrane anchor subunit
[Bradyrhizobium japonicum]
Length = 132
Score = 46.6 bits (109), Expect = 2e-04
Identities = 33/125 (26%), Positives = 60/125 (47%), Gaps = 3/125 (2%)
Frame = +3
Query: 240 RLNRPVSPHLAIYKLEQTWFGSSAWNRITGCTLSA---TLYGFSIAYLAAPVVGLHLESL 410
R+ RP+SPH+ +Y+ T S +R TG L A L + IA + P H+++
Sbjct: 4 RIERPLSPHMQVYRWTLT-MALSIVHRATGIALYAGTLLLAWWLIAAASGPAAYSHVQAF 62
Query: 411 SIASFVAGLPLAVKGGLKFTLGFPFVYHAISGVKHLLYDAGKGFAKSTIIQADKYVWAAS 590
+ S + L + F + ++H +SG++H ++D G GF + + + W A
Sbjct: 63 T-GSIIGRL-------IVFGYTWALMHHMLSGIRHFVWDLGYGFKAN---EREALTWGAL 111
Query: 591 VLGAI 605
+ G +
Sbjct: 112 IGGIV 116
>gb|AAL60178.1|AF416764_1 (AF416764) succinate dehydrogenase subunit C [Ehrlichia
chaffeensis]
Length = 128
Score = 46.2 bits (108), Expect = 2e-04
Identities = 34/107 (31%), Positives = 55/107 (50%), Gaps = 4/107 (3%)
Frame = +3
Query: 249 RPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATL----YGFSIAYLAAPVVGLHLESLSI 416
RP+SPHL IYK+ + S +R TG L L +GF +++L VV + S
Sbjct: 5 RPLSPHLQIYKVV---YKLSIMHRFTGMILFLGLLVLSWGFILSFLCPQVV-YRICSFFC 60
Query: 417 ASFVAGLPLAVKGGLKFTLGFPFVYHAISGVKHLLYDAGKGFAKSTI 557
S+V+ L + + F YH ++G++H+ +D G G +KS +
Sbjct: 61 NSYVSLYSLKL---ITFIWLNVLCYHYMNGIRHIFWDLGLGLSKSAV 104
>gb|AAF54585.1| (AE003690) CG6629 gene product [Drosophila melanogaster]
gb|AAL90098.1| (AY089360) AT18465p [Drosophila melanogaster]
Length = 261
Score = 45.8 bits (107), Expect = 3e-04
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 4/134 (2%)
Frame = +3
Query: 234 NQRLNRPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLESLS 413
N L R +SPHL+IYK++ T SA+ RI+G L+ ++ I+ GL L+
Sbjct: 79 NMLLGRQLSPHLSIYKIQLT-STLSAFLRISGFVLAVFVWFVGIS-------GLCLQG-D 129
Query: 414 IASFVAGLPLAVKGGL----KFTLGFPFVYHAISGVKHLLYDAGKGFAKSTIIQADKYVW 581
+ F+ + G+ K + PF YH ++G +HL++ K F I A YV
Sbjct: 130 MEGFIKKVEKCDCHGMVTMAKVMVTMPFAYHTVAGTRHLIWYLNK-FLTIPEIYATGYV- 187
Query: 582 AASVLGAIGLVAFL 623
+V I L AFL
Sbjct: 188 --AVALTIALSAFL 199
>ref|NP_054409.1| (NC_001660) ORF137 [Marchantia polymorpha]
sp|P35721|C560_MARPO SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT (SUCCINATE
DEHYDROGENASE, SUBUNIT III)
pir||S25968 succinate dehydrogenase (ubiquinone) (EC 1.3.5.1) chain 3 -
liverwort (Marchantia polymorpha) mitochondrion
gb|AAC09406.1| (M68929) ORF137 [Marchantia polymorpha]
Length = 137
Score = 44.3 bits (103), Expect = 0.001
Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Frame = +3
Query: 240 RLNRPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLESLSIA 419
++NRP+SPHL IYK + T S ++RI+G L AT+ FSI + + L
Sbjct: 2 KINRPLSPHLTIYKPQLT-STFSIFHRISGAFL-ATMVLFSILFFKIGDLSLTFYHFYQY 59
Query: 420 SFVAGLPL--AVKGGLKFTLGFPFVYHAISGVKHLLYDAG 533
F L + + FTL YH +GV+HLL+D G
Sbjct: 60 FFFLTFYLNWFIISLVNFTL-LALCYHMSNGVRHLLWDLG 98
>sp|Q59659|DHSC_PARDE SUCCINATE DEHYDROGENASE CYTOCHROME B-556 SUBUNIT
pir||T46878 succinate dehydrogenase (ubiquinone) (EC 1.3.5.1) [imported] -
Paracoccus denitrificans
gb|AAA75175.1| (U31902) succinate dehydrogenase b-type cytochrome subunit
[Paracoccus denitrificans]
Length = 130
Score = 43.9 bits (102), Expect = 0.001
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 1/128 (0%)
Frame = +3
Query: 240 RLNRPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLESLSIA 419
R NRP+SPHL +Y+L +S RITG L A + + +L A V + +
Sbjct: 6 RGNRPLSPHLQVYRLPLAAI-TSIMTRITGHALVAGIVLITW-WLVAAVTSPGAFACADW 63
Query: 420 SFVAGLPLAVKGGLKFTLGFPFVYHAISGVKHLLYDAGKGFAKSTIIQADKYVWAAS-VL 596
+ L + G + L YH ++G++HL YDAG G ++ + + A S VL
Sbjct: 64 VVRSWLGFIILTGSMWALW----YHLLAGLRHLFYDAGYGLEIEQAHKSSQALIAGSVVL 119
Query: 597 GAIGLVAF 620
+ L+ F
Sbjct: 120 AVLTLIVF 127
>ref|NP_539077.1| (NC_003317) SUCCINATE DEHYDROGENASE CYTOCHROME B-556 SUBUNIT
[Brucella melitensis]
gb|AAL51341.1| (AE009458) SUCCINATE DEHYDROGENASE CYTOCHROME B-556 SUBUNIT
[Brucella melitensis]
Length = 132
Score = 43.9 bits (102), Expect = 0.001
Identities = 36/122 (29%), Positives = 53/122 (42%)
Frame = +3
Query: 249 RPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLESLSIASFV 428
RP+SPHL+IYK T S +RITG LY F LAA ++ +
Sbjct: 10 RPLSPHLSIYKPVIT-MTMSIVHRITG----GALY-FGTLLLAAWLISAATSEECFNTIN 63
Query: 429 AGLPLAVKGGLKFTLGFPFVYHAISGVKHLLYDAGKGFAKSTIIQADKYVWAASVLGAIG 608
A + + F + ++H GV+H ++D G K T A K WA+ V +
Sbjct: 64 ALFSSWIGRLILFGYTWALLHHLAGGVRHFIWDTGAAMEKHT---ASKIAWASVVFSVVA 120
Query: 609 LV 614
+
Sbjct: 121 TI 122
>ref|NP_105177.1| (NC_002678) succinate dehydrogenase membrane anchor subunit
[Mesorhizobium loti]
dbj|BAB50963.1| (AP003003) succinate dehydrogenase membrane anchor subunit
[Mesorhizobium loti]
Length = 139
Score = 43.9 bits (102), Expect = 0.001
Identities = 39/118 (33%), Positives = 55/118 (46%)
Frame = +3
Query: 240 RLNRPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLESLSIA 419
R RP+SPHL IY+ T S +RITG L +I +AA + ++ A
Sbjct: 12 RRERPLSPHLTIYRPPIT-MTMSIIHRITGGALYFGTLLVAIWLMAAASSQATFDWVNWA 70
Query: 420 SFVAGLPLAVKGGLKFTLGFPFVYHAISGVKHLLYDAGKGFAKSTIIQADKYVWAASV 593
F L + G + L ++H + GV+HL++D G G K T A K WA V
Sbjct: 71 -FGTWLGRLILFGYTWAL----MHHMLGGVRHLVWDTGAGLEKHT---ASKIAWATLV 120
>gb|AAB86570.1| (AF030969) unknown [Schistosoma mansoni]
Length = 198
Score = 43.1 bits (100), Expect = 0.002
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 6/138 (4%)
Frame = +3
Query: 159 ISTSSPTRATGSVKVSQEDGHQILV----NQRLNRPVSPHLAIYKLEQTWFGSSAWNRIT 326
+ TS + + S KV ++ ++ N RP SPHL +Y S +R T
Sbjct: 43 VRTSKAAKGSTSXKVRRQAEKEMQSFWDRNATEKRPWSPHLQVYSSPLV-MRFSFLHRAT 101
Query: 327 GCTLSATLYGFSIAYLAAPVVGLHLESLSIASFVAGLPL--AVKGGLKFTLGFPFVYHAI 500
G ++ +S + A H +S I +V + L +V KF L +P VYH +
Sbjct: 102 GIAMAIV---WSSVGIGAFFFTGHYDS--ILDYVRNMHLGTSVIAACKFILCYPLVYHYL 156
Query: 501 SGVKHLLYDAGKGFAKST 554
+G++HL +D GF T
Sbjct: 157 NGMRHLAWDYAIGFPIKT 174
>ref|NP_387178.1| (NC_003047) PROBABLE SUCCINATE DEHYDROGENASE CYTOCHROME B-556
SUBUNIT TRANSMEMBRANE PROTEIN [Sinorhizobium meliloti]
emb|CAC47651.1| (AL591792) PROBABLE SUCCINATE DEHYDROGENASE CYTOCHROME B-556
SUBUNIT TRANSMEMBRANE PROTEIN [Sinorhizobium meliloti]
Length = 130
Score = 42.4 bits (98), Expect = 0.004
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
Frame = +3
Query: 228 LVNQRLNRPVSPHLAIYKLEQTWFGSSAWNRITGCTL--SATLYGFSIAYLAAPVVGLHL 401
+ N +RP+SPHL IYK T S +RITG L L + + A+
Sbjct: 1 MTNVTRSRPLSPHLQIYKPIPTMI-MSIMHRITGGALYFGTVLVAWWLIAAASGTAYYDW 59
Query: 402 ESLSIASFVAGLPLAVKGGLKFTLGFPFVYHAISGVKHLLYDAGKGFAKSTIIQADKYVW 581
+ +F+ + L F + V+H + G++HL +D G G+ K + K +
Sbjct: 60 VNWLFGTFIGKVVL-------FGYTWALVHHLLGGIRHLAWDLGYGYEKHFATRMAKAMI 112
Query: 582 AAS-----VLGAIGLVA 617
AS V+ +G +A
Sbjct: 113 VASATLTLVIWVVGYLA 129
>ref|XP_092517.1| (XM_092517) hypothetical protein XP_092517 [Homo sapiens]
Length = 384
Score = 42.0 bits (97), Expect = 0.005
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +3
Query: 462 KFTLGFPFVYHAISGVKHLLYDAGKGFAKSTIIQADKYVWAASVLGAIGLVA 617
KF L FP +YH +G++HL++D GKG + Q+ V +VL +GL A
Sbjct: 333 KFALVFPLMYHTWNGIQHLMWDLGKGLKIPQLYQSGVVVLVLTVL-FVGLAA 383
>gb|AAF21608.1|AF018287_2 (AF018287) SdhC; succinate dehydrogenase b-type cytochrome subunit
[papaya bunchy top disease rickettsia]
Length = 125
Score = 39.7 bits (91), Expect = 0.023
Identities = 38/119 (31%), Positives = 54/119 (44%)
Frame = +3
Query: 249 RPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLESLSIASFV 428
RP SPHL IYK + S +R+TG L F+++ LA + +S I +
Sbjct: 12 RPTSPHLTIYK-PRISSTLSILHRMTGVALF-----FAVSILAWWFIFSKFDSNYIQ--L 63
Query: 429 AGLPLAVKGGLKFTLGFPFVYHAISGVKHLLYDAGKGFAKSTIIQADKYVWAASVLGAI 605
A +K L T F + YH +G++HL +D G GF + V SVL I
Sbjct: 64 ANCCCIIKICLILT-SFAWFYHLCNGIRHLFWDIGYGFPIKAVNLTGWSVVICSVLFTI 121
>ref|NP_062489.1| (NC_001677) succinate:cytochrome c oxidoreductase subunit 3
[Chondrus crispus]
sp|P48934|C560_CHOCR Succinate dehydrogenase cytochrome B560 subunit (Succinate
dehydrogenase, subunit III)
pir||S59115 succinate dehydrogenase (ubiquinone) (EC 1.3.5.1) chain III - red
alga (Chondrus crispus) mitochondrion
emb|CAA87612.1| (Z47547) succinate dehydrogenase, subunit III [Chondrus crispus]
Length = 127
Score = 39.7 bits (91), Expect = 0.023
Identities = 29/96 (30%), Positives = 46/96 (47%)
Frame = +3
Query: 246 NRPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLESLSIASF 425
NRP++PHL +Y + + S W+RI+G L+ F I L++ SF
Sbjct: 9 NRPIAPHLLVYTPQLSSL-FSIWHRISGVGLAFFFTTFLIFIRIILSSNFACNLLTLISF 67
Query: 426 VAGLPLAVKGGLKFTLGFPFVYHAISGVKHLLYDAG 533
+ + L F L F F YH +G +H+++D G
Sbjct: 68 EISQWIIIYFNL-FILLFLF-YHLFNGTRHIIWDFG 101
>gb|AAL36750.1|AF353999_30 (AF353999) succinate:cytochrome c oxidoreductase subunit 3
[Mesostigma viride]
Length = 131
Score = 38.1 bits (87), Expect = 0.067
Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Frame = +3
Query: 249 RPVSPHLAIYKLEQTWFGS-SAWNRITGCTLSATLYGFSIAYLAAPVVGLHL-ESLSIAS 422
RP+SPH+++Y+ + W S ++RI+G L +L+ F +L + + H S + S
Sbjct: 7 RPLSPHVSVYQPQ--WNSMFSLFHRISGSVLVISLFTF---FLFSIIYSFHATRSYELFS 61
Query: 423 FVAGLPLA-VKGGLKFTLGFPFVYHAISGVKHLLYDAGK 536
F L + + ++ T+ F YH I+G+ H++ + K
Sbjct: 62 FFLTLEDSKLFSFVELTILFALSYHIINGIHHIMIENDK 100
>gb|AAK77126.1|AF362730_1 (AF362730) succinate dehydrogenase subunit 3 [Lycopersicon
esculentum]
Length = 108
Score = 38.1 bits (87), Expect = 0.067
Identities = 27/93 (29%), Positives = 45/93 (48%)
Frame = +3
Query: 249 RPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLESLSIASFV 428
RP+SPHL IYK + T S ++RI+G L+ ++ F + L ++ E+ F
Sbjct: 5 RPLSPHLPIYKPQLT-STFSIFHRISGAFLATIVFFFYLLCLKIGLICFTYENFYQFFFY 63
Query: 429 AGLPLAVKGGLKFTLGFPFVYHAISGVKHLLYD 527
+ + + + YH +GV+HLL D
Sbjct: 64 SSKLILISVEI---TALALSYHLYNGVRHLLTD 93
>dbj|BAB17027.1| (AB020752) gene_id:MTH16.1~pir||T05407~strong similarity to unknown
protein [Arabidopsis thaliana]
Length = 240
Score = 36.2 bits (82), Expect = 0.25
Identities = 32/126 (25%), Positives = 53/126 (41%)
Frame = +3
Query: 144 ALAAGISTSSPTRATGSVKVSQEDGHQILVNQRLNRPVSPHLAIYKLEQTWFGSSAWNRI 323
AL G S + +G +K +QE+ + RP+SPHL++Y+ + S +NRI
Sbjct: 122 ALDVGTSKRLFSTISGDIKTTQEEP-----KIKSFRPLSPHLSVYQPQMNSM-LSIFNRI 175
Query: 324 TGCTLSATLYGFSIAYLAAPVVGLHLESLSIASFVAGLPLAVKGGLKFTLGFPFVYHAIS 503
+G L+ + + YL ++ L S + L V + +YH I
Sbjct: 176 SGVYLTGVTFAGYLLYLKMGMICLTYPSFYQVLYHTQQQLPV---ITSVTALAAIYHTIK 232
Query: 504 GVKHLL 521
LL
Sbjct: 233 STHSLL 238
>ref|NP_196522.1| (NM_120997) putative protein [Arabidopsis thaliana]
pir||T49938 hypothetical protein F17I14.210 - Arabidopsis thaliana
emb|CAB89370.1| (AL353994) putative protein [Arabidopsis thaliana]
gb|AAL50073.1| (AY070732) AT5g09600/F17I14_210 [Arabidopsis thaliana]
gb|AAL75912.1| (AY074861) AT5g09600/F17I14_210 [Arabidopsis thaliana]
Length = 213
Score = 36.2 bits (82), Expect = 0.25
Identities = 32/126 (25%), Positives = 53/126 (41%)
Frame = +3
Query: 144 ALAAGISTSSPTRATGSVKVSQEDGHQILVNQRLNRPVSPHLAIYKLEQTWFGSSAWNRI 323
AL G S + +G +K +QE+ + RP+SPHL++Y+ + S +NRI
Sbjct: 95 ALDVGTSKRLFSTISGDIKTTQEEP-----KIKSFRPLSPHLSVYQPQMNSM-LSIFNRI 148
Query: 324 TGCTLSATLYGFSIAYLAAPVVGLHLESLSIASFVAGLPLAVKGGLKFTLGFPFVYHAIS 503
+G L+ + + YL ++ L S + L V + +YH I
Sbjct: 149 SGVYLTGVTFAGYLLYLKMGMICLTYPSFYQVLYHTQQQLPV---ITSVTALAAIYHTIK 205
Query: 504 GVKHLL 521
LL
Sbjct: 206 STHSLL 211
>ref|NP_194948.1| (NM_119373) putative protein [Arabidopsis thaliana]
pir||T05407 hypothetical protein F10M6.150 - Arabidopsis thaliana
emb|CAA16969.1| (AL021811) putative protein [Arabidopsis thaliana]
emb|CAB79939.1| (AL161580) putative protein [Arabidopsis thaliana]
Length = 1086
Score = 36.2 bits (82), Expect = 0.25
Identities = 32/126 (25%), Positives = 53/126 (41%)
Frame = +3
Query: 144 ALAAGISTSSPTRATGSVKVSQEDGHQILVNQRLNRPVSPHLAIYKLEQTWFGSSAWNRI 323
AL G S + +G +K +QE+ + RP+SPHL++Y+ + S +NRI
Sbjct: 968 ALDVGTSKRLFSTISGDIKTTQEEP-----KIKSFRPLSPHLSVYQPQMNSM-LSIFNRI 1021
Query: 324 TGCTLSATLYGFSIAYLAAPVVGLHLESLSIASFVAGLPLAVKGGLKFTLGFPFVYHAIS 503
+G L+ + + YL ++ L S + L V + +YH I
Sbjct: 1022 SGVYLTGVTFAGYLLYLKMGMICLTYPSFYQVLYHTQQQLPV---ITSVTALAAIYHTIK 1078
Query: 504 GVKHLL 521
LL
Sbjct: 1079 STHSLL 1084
>ref|NP_059349.1| (NC_000887) succinate:cytochrome c oxidoreductase subunit 3
[Cyanidioschyzon merolae]
pir||A58930 succinate dehydrogenase cytochrome B560 subunit - Cyanidioschyzon
merolae mitochondrion
dbj|BAA36520.1| (D89861) succinate dehydrogenase cytochrome B560 subunit
[Cyanidioschyzon merolae]
Length = 137
Score = 35.4 bits (80), Expect = 0.43
Identities = 31/121 (25%), Positives = 57/121 (46%), Gaps = 5/121 (4%)
Frame = +3
Query: 249 RPVSPHLAIYKLEQTWFGS-SAWNRITGCTLSATLY----GFSIAYLAAPVVGLHLESLS 413
RP++PHL IY + W S ++RI+G + ++ G +P + + + L
Sbjct: 7 RPIAPHLTIYNAQ--WNSVFSIFHRISGVFIMVFIFFSTLGLFFFKFYSPTI-MCVSFLW 63
Query: 414 IASFVAGLPLAVKGGLKFTLGFPFVYHAISGVKHLLYDAGKGFAKSTIIQADKYVWAASV 593
+ + V + +++ F + F YH SG+ HLL + G + I + KY + S+
Sbjct: 64 LFNKVYWIFISII----FIIFMSFFYHLCSGIYHLLLELGYFYHMVKIEKMSKYSLSFSI 119
Query: 594 L 596
L
Sbjct: 120 L 120
>gb|AAK73693.1|AF362740_1 (AF362740) succinate dehydrogenase subunit 3 [Glycine max]
Length = 157
Score = 34.7 bits (78), Expect = 0.74
Identities = 27/91 (29%), Positives = 42/91 (45%), Gaps = 1/91 (1%)
Frame = +3
Query: 249 RPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLESL-SIASF 425
RP+SPHL +Y+ Q S +NRI G L+ + F + Y+ +V L +S +
Sbjct: 70 RPLSPHLPLYQ-PQLSSTLSIFNRIAGAFLAGVILVFYMIYMKLGLVSLTYDSFYQFIFY 128
Query: 426 VAGLPLAVKGGLKFTLGFPFVYHAISGVKHL 518
+ L L V + YH S ++HL
Sbjct: 129 SSKLNLLVMEISALAVS----YHLYSAIRHL 155
>ref|NP_220518.1| (NC_000963) SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT (sdhC)
[Rickettsia prowazekii]
sp|P41085|DHSC_RICPR Succinate dehydrogenase cytochrome B-556 subunit
pir||D71722 succinate dehydrogenase cytochrome b560 chain (sdhC) RP126 -
Rickettsia prowazekii
gb|AAA18325.1| (U02603) putative hydrophobic subunit of succinate dehydrogenase
[Rickettsia prowazekii]
emb|CAA14595.1| (AJ235270) SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT (sdhC)
[Rickettsia prowazekii]
Length = 124
Score = 34.7 bits (78), Expect = 0.74
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Frame = +3
Query: 249 RPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLESLSIASFV 428
RP SPHL IYK Q S +R+TG L VV + + L ++ +
Sbjct: 12 RPTSPHLTIYK-PQISSTLSILHRMTGVALFF-------------VVSILVWWLILSKYD 57
Query: 429 AG-LPLAVKGGLKFTL---GFPFVYHAISGVKHLLYDAGKGFA 545
L LA +K L + + YH +G++HL +D G GF+
Sbjct: 58 NNYLQLASCCIIKICLVAFSYSWCYHLCNGIRHLFWDIGYGFS 100
>ref|NP_066472.1| (NC_002572) succinate:cytochrome c oxidoreductase subunit 3
[Rhodomonas salina]
gb|AAG17743.1|AF288090_19 (AF288090) succinate:cytochrome c oxidoreductase subunit 3
[Rhodomonas salina]
Length = 128
Score = 33.1 bits (74), Expect = 2.2
Identities = 31/125 (24%), Positives = 55/125 (43%), Gaps = 3/125 (2%)
Frame = +3
Query: 249 RPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLESLSIAS-F 425
RP++PHL +YK + T S ++RI+ L F+I + +L S F
Sbjct: 6 RPLAPHLLVYKPQLTSI-FSIFHRISAGILFVV---FTILLFLSYCFDYYLNFFSFYFIF 61
Query: 426 VAGLPL--AVKGGLKFTLGFPFVYHAISGVKHLLYDAGKGFAKSTIIQADKYVWAASVLG 599
P + + + L F F++H ++G++H+ +D G G + V+ S L
Sbjct: 62 YYFFPFFNLIIYFVSYFLTFIFLFHMVNGLRHISWDFGLGLEIKNVYITGIIVFCISSLF 121
Query: 600 AIGLV 614
L+
Sbjct: 122 VFVLI 126
>gb|AAK73692.1|AF362739_1 (AF362739) succinate dehydrogenase subunit 3 [Gossypium hirsutum]
Length = 201
Score = 33.1 bits (74), Expect = 2.2
Identities = 30/95 (31%), Positives = 42/95 (43%), Gaps = 2/95 (2%)
Frame = +3
Query: 249 RPVSPHLAIYKLEQTWFGSSAWNRITGCTL-SATLYGFSIAYLAAPVVGLHLESLSIASF 425
RP+SPHL IYK Q S NRI+G L +A L+ + ++ + + +
Sbjct: 107 RPLSPHLPIYK-PQLSATLSITNRISGVFLTTALLFSYLLSLKMGSICFTYSNFYQFFFY 165
Query: 426 VAGL-PLAVKGGLKFTLGFPFVYHAISGVKHLLYD 527
A L P+ V YH GV+HLL D
Sbjct: 166 SAKLAPVTVS-----IAALAVSYHLCYGVRHLLAD 195
>ref|NP_524407.1| (NM_079683) neither inactivation nor afterpotential E; rhodopsin;
rhodopsin 1 [Drosophila melanogaster]
sp|P06002|OPS1_DROME OPSIN RH1 (OUTER R1-R6 PHOTORECEPTOR CELLS OPSIN)
pir||OOFF rhodopsin - fruit fly (Drosophila melanogaster)
gb|AAA28733.1| (K02315) opsin [Drosophila melanogaster]
gb|AAF55712.1| (AE003728) ninaE gene product [Drosophila melanogaster]
Length = 373
Score = 32.3 bits (72), Expect = 3.7
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 153 AGISTSSPTRATGSVKVSQEDGHQILVNQRLNRPVSPHLAIYKLEQTWFGSSAW 314
AG+ ++ + S+ + D +Q++V RP++ LA+ K+ WF SS W
Sbjct: 127 AGLGSAFGCSSIWSMCMISLDRYQVIVKGMAGRPMTIPLALGKIAYIWFMSSIW 180
>gb|AAB87898.1| (AF025813) rhodopsin 1 [Drosophila subobscura]
Length = 373
Score = 32.3 bits (72), Expect = 3.7
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 153 AGISTSSPTRATGSVKVSQEDGHQILVNQRLNRPVSPHLAIYKLEQTWFGSSAW 314
AG+ ++ + S+ + D +Q++V RP++ LA+ K+ WF SS W
Sbjct: 127 AGLGSAFGCSSIWSMCMISLDRYQVIVKGMAGRPMTIPLALGKIAYIWFMSSIW 180
>ref|NP_558528.1| (NC_003364) ABC-2 type transport system, membrane protein
[Pyrobaculum aerophilum]
gb|AAL62710.1| (AE009761) ABC-2 type transport system, membrane protein
[Pyrobaculum aerophilum]
Length = 241
Score = 32.3 bits (72), Expect = 3.7
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Frame = +3
Query: 342 ATLYGFSIAY----LAAPV------VGLHLESLSIASFVAGLPLAVKGGLKFTLGFPFVY 491
AT Y I Y AAPV +GL L S A G+ LA+ + P
Sbjct: 72 ATYYRLGIKYQSMLTAAPVSPAGYALGLALSSFIFALPTLGVYLAILLWVGVQFLTPLTL 131
Query: 492 HAISGVKHLLYDAGKGFAKSTIIQADKYVWA-ASVLGAI 605
+A+S + L AG GF S+ I+ +Y WA +L A+
Sbjct: 132 YALSAL--WLASAGIGFTLSSFIKHMRYAWALPQILSAV 168
>dbj|BAB17026.1| (AB006704) sulfate transporter-like protein [Arabidopsis thaliana]
Length = 389
Score = 32.3 bits (72), Expect = 3.7
Identities = 30/126 (23%), Positives = 52/126 (40%), Gaps = 20/126 (15%)
Frame = +3
Query: 297 FGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLESLSIASFVAGLPLAVKGGLKFTLG 476
FGSS I L + L ++ +A LH+E + + + G+ + G L+
Sbjct: 141 FGSSRQLAIGPVALVSLLVSNALGGIADTNEELHIELAILLALLVGILECIMGLLRLGWL 200
Query: 477 FPFVYHA-----------ISGVKHLLYDAGKGFAKST---------IIQADKYVWAASVL 596
F+ H+ + G+ + Y G A+S+ I ADK+ W V+
Sbjct: 201 IRFISHSVISGFTSASAIVIGLSQIKYFLGYSIARSSKIVPIVESIIAGADKFQWPPFVM 260
Query: 597 GAIGLV 614
G++ LV
Sbjct: 261 GSLILV 266
>ref|NP_484506.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB72420.1| (AP003582) ORF_ID:all0462~hypothetical protein [Nostoc sp. PCC
7120]
Length = 1829
Score = 32.3 bits (72), Expect = 3.7
Identities = 26/85 (30%), Positives = 42/85 (48%), Gaps = 6/85 (7%)
Frame = +3
Query: 27 LTRKPEHTNLVTMLAQR----VGVNALRSGAAKPFFAQNISKSALAAGISTSSPTRATGS 194
+TR P H L +LA+R +GV AL A ++A+N + LA + T+ S
Sbjct: 1 MTRSPNHRRLSLILARRASLVLGVMALGGIATGAWWARNYIYNDLAPLVETNLEQLLGRS 60
Query: 195 VKVSQEDGHQI--LVNQRLNRPVSP 263
+K+ Q +G + L L+ P +P
Sbjct: 61 IKLGQVEGFTLSSLRFSSLSIPATP 85
>gb|AAB31029.1| opsin Rh1 [Drosophila melanogaster, Peptide Partial, 321 aa]
Length = 321
Score = 32.3 bits (72), Expect = 3.7
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 153 AGISTSSPTRATGSVKVSQEDGHQILVNQRLNRPVSPHLAIYKLEQTWFGSSAW 314
AG+ ++ + S+ + D +Q++V RP++ LA+ K+ WF SS W
Sbjct: 102 AGLGSAFGCSSIWSMCMISLDRYQVIVKGMAGRPMTIPLALGKIAYIWFMSSIW 155
>gb|AAB31031.1| opsin Rh1 [Drosophila virilis, Peptide Partial, 320 aa]
Length = 320
Score = 32.3 bits (72), Expect = 3.7
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 153 AGISTSSPTRATGSVKVSQEDGHQILVNQRLNRPVSPHLAIYKLEQTWFGSSAW 314
AG+ ++ + S+ + D +Q++V RP++ LA+ K+ WF SS W
Sbjct: 101 AGLGSAFGCSSIWSMCMISLDRYQVIVKGMAGRPMTIPLALGKIAYIWFMSSIW 154
>ref|NP_196859.1| (NM_121358) sulfate transporter [Arabidopsis thaliana]
emb|CAC05432.1| (AL391710) sulfate transporter [Arabidopsis thaliana]
Length = 685
Score = 32.3 bits (72), Expect = 3.7
Identities = 30/126 (23%), Positives = 52/126 (40%), Gaps = 20/126 (15%)
Frame = +3
Query: 297 FGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLESLSIASFVAGLPLAVKGGLKFTLG 476
FGSS I L + L ++ +A LH+E + + + G+ + G L+
Sbjct: 141 FGSSRQLAIGPVALVSLLVSNALGGIADTNEELHIELAILLALLVGILECIMGLLRLGWL 200
Query: 477 FPFVYHA-----------ISGVKHLLYDAGKGFAKST---------IIQADKYVWAASVL 596
F+ H+ + G+ + Y G A+S+ I ADK+ W V+
Sbjct: 201 IRFISHSVISGFTSASAIVIGLSQIKYFLGYSIARSSKIVPIVESIIAGADKFQWPPFVM 260
Query: 597 GAIGLV 614
G++ LV
Sbjct: 261 GSLILV 266
>dbj|BAA23424.1| (AB008782) sulfate transporter [Arabidopsis thaliana]
Length = 685
Score = 32.3 bits (72), Expect = 3.7
Identities = 30/126 (23%), Positives = 52/126 (40%), Gaps = 20/126 (15%)
Frame = +3
Query: 297 FGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLESLSIASFVAGLPLAVKGGLKFTLG 476
FGSS I L + L ++ +A LH+E + + + G+ + G L+
Sbjct: 141 FGSSRQLAIGPVALVSLLVSNALGGIADTNEELHIELAILLALLVGILECIMGLLRLGWL 200
Query: 477 FPFVYHA-----------ISGVKHLLYDAGKGFAKST---------IIQADKYVWAASVL 596
F+ H+ + G+ + Y G A+S+ I ADK+ W V+
Sbjct: 201 IRFISHSVISGFTSASAIVIGLSQIKYFLGYSIARSSKIVPIVESIIAGADKFQWPPFVM 260
Query: 597 GAIGLV 614
G++ LV
Sbjct: 261 GSLILV 266
>gb|AAL17653.1| (AY055469) succinate dehydrogenase subunit C [Anaplasma
phagocytophila]
Length = 93
Score = 32.3 bits (72), Expect = 3.7
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 489 YHAISGVKHLLYDAGKGFAKSTIIQADKYVWAASVLGAIGL 611
YH +G++HL +D G GF KS + + +V IGL
Sbjct: 46 YHYYNGIRHLFWDCGIGFGKSEATFSGWLMLGFAVTSLIGL 86
>ref|NP_287238.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_309509.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
gb|AAG55850.1|AE005320_4 (AE005320) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB34905.1| (AP002555) hypothetical protein [Escherichia coli O157:H7]
Length = 125
Score = 32.0 bits (71), Expect = 4.8
Identities = 30/94 (31%), Positives = 39/94 (40%), Gaps = 4/94 (4%)
Frame = +3
Query: 132 ISKSALAAGISTSSPTRATGSVKVSQEDGHQILVNQRLNRPVSPHLAIYKLEQTWFGSSA 311
+ S LAAGIS P +T + Q L N+R PV+ H Y +
Sbjct: 35 MESSLLAAGISAEKPVLSTSDI---QPSASSTLYNER-QEPVTVHYRFYWYDARGLEMHP 90
Query: 312 WNRITGCTLSA----TLYGFSIAYLAAPVVGLHL 401
R T+ A TLYG S +L A V L+L
Sbjct: 91 LERPRSVTIPAHSAVTLYG-SANFLGAHKVRLYL 123
>sp|P28678|OPS1_DROPS Opsin Rh1 (Outer R1-R6 photoreceptor cells opsin)
emb|CAA46708.1| (X65877) rh1 opsin [Drosophila pseudoobscura]
Length = 374
Score = 32.0 bits (71), Expect = 4.8
Identities = 20/70 (28%), Positives = 37/70 (52%)
Frame = +3
Query: 153 AGISTSSPTRATGSVKVSQEDGHQILVNQRLNRPVSPHLAIYKLEQTWFGSSAWNRITGC 332
AG+ ++ + S+ + D +Q++V RP++ LA+ K+ WF S+ W C
Sbjct: 127 AGLGSAFGCSSIWSMCMISLDRYQVIVKGMAGRPMTIPLALGKIAYIWFMSTIW-----C 181
Query: 333 TLSATLYGFS 362
L A ++G+S
Sbjct: 182 CL-APVFGWS 190
>gb|AAF52717.1| (AE003622) CG9487 gene product [Drosophila melanogaster]
Length = 1857
Score = 32.0 bits (71), Expect = 4.8
Identities = 23/91 (25%), Positives = 38/91 (41%)
Frame = +3
Query: 12 LGRTSLTRKPEHTNLVTMLAQRVGVNALRSGAAKPFFAQNISKSALAAGISTSSPTRATG 191
+G T +P T V +GA + Q + KS+ + STS+ T +T
Sbjct: 1 MGHTHTRNEPNGTQHTQRKQLEVLKARTANGAMQVIRTQTVQKSSSSWSSSTSTTTTSTT 60
Query: 192 SVKVSQEDGHQILVNQRLNRPVSPHLAIYKL 284
+ SQ +GH + P+S + I +L
Sbjct: 61 HQRTSQTNGHDPPPKSTILSPISQGVDICEL 91
>gb|AAF47376.1| (AE003468) CG6994 gene product [Drosophila melanogaster]
Length = 1390
Score = 31.6 bits (70), Expect = 6.3
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +3
Query: 84 VNALRSGAAKP---FF--AQNISKSALAAGISTSSPTRATGSVKVSQEDGHQILVNQRLN 248
V ++ A KP FF A ++++A A+G ST S + + + + QE+ H ILV R
Sbjct: 1028 VKKIKFFALKPLEDFFTAAPVLAQAAEASGQSTESQAKVSAAERKLQEEKHDILVKMRSF 1087
Query: 249 RP 254
RP
Sbjct: 1088 RP 1089
>ref|NP_422323.1| (NC_002696) succinate dehydrogenase, cytochrome b556 subunit
[Caulobacter crescentus CB15]
gb|AAK25491.1| (AE006011) succinate dehydrogenase, cytochrome b556 subunit
[Caulobacter crescentus CB15]
Length = 135
Score = 31.6 bits (70), Expect = 6.3
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 5/124 (4%)
Frame = +3
Query: 249 RPVSPHLAIYKLEQTWFGSSAWNRITGCTL-----SATLYGFSIAYLAAPVVGLHLESLS 413
RP+SPHL +++ T S +R GC + + L G++ A A P +
Sbjct: 11 RPMSPHLQVWRWHIT-MACSILHR--GCVVGLWVGAVILAGWAAALAAGPD--------A 59
Query: 414 IASFVAGLPLAVKGGLKFTLGFPFVYHAISGVKHLLYDAGKGFAKSTIIQADKYVWAASV 593
AS+V L + + F ++ ++ +DAGKGFA T A +V
Sbjct: 60 YASYVGLLGSPIGKLVLLGETFAVFFNVAYTIRQTFWDAGKGFAPRTADMTGAMAIAFAV 119
Query: 594 LGAI 605
+ I
Sbjct: 120 VATI 123
>ref|NP_220566.1| (NC_000963) PROTON/SODIUM-GLUTAMATE SYMPORT PROTEIN (gltP)
[Rickettsia prowazekii]
pir||D71728 proton/sodium-glutamate symport protein (gltP) RP176 - Rickettsia
prowazekii
emb|CAA14643.1| (AJ235270) PROTON/SODIUM-GLUTAMATE SYMPORT PROTEIN (gltP)
[Rickettsia prowazekii]
Length = 399
Score = 31.6 bits (70), Expect = 6.3
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 300 GSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLESLSIAS 422
G A G T AT++G +IA + P VG+H++ S+++
Sbjct: 68 GMKAVAAFLGTTFFATIFGLTIALVLKPGVGIHIDFTSLST 108
>gb|AAL68229.1| (AY075397) LD28101p [Drosophila melanogaster]
Length = 827
Score = 31.6 bits (70), Expect = 6.3
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +3
Query: 84 VNALRSGAAKP---FF--AQNISKSALAAGISTSSPTRATGSVKVSQEDGHQILVNQRLN 248
V ++ A KP FF A ++++A A+G ST S + + + + QE+ H ILV R
Sbjct: 465 VKKIKFFALKPLEDFFTAAPVLAQAAEASGQSTESQAKVSAAERKLQEEKHDILVKMRSF 524
Query: 249 RP 254
RP
Sbjct: 525 RP 526
>ref|NP_415622.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P75946|YCFL_ECOLI Hypothetical protein ycfL
pir||E64854 ycfL protein precursor - Escherichia coli
gb|AAC74188.1| (AE000211) orf, hypothetical protein [Escherichia coli K12]
dbj|BAA35911.1| (D90745) ORF_ID:o237#3 [Escherichia coli]
dbj|BAA35919.1| (D90746) ORF_ID:o237#3 [Escherichia coli]
Length = 125
Score = 31.2 bits (69), Expect = 8.2
Identities = 30/94 (31%), Positives = 39/94 (40%), Gaps = 4/94 (4%)
Frame = +3
Query: 132 ISKSALAAGISTSSPTRATGSVKVSQEDGHQILVNQRLNRPVSPHLAIYKLEQTWFGSSA 311
+ S LAAGIS P +T + Q L N+R PV+ H Y +
Sbjct: 35 MESSLLAAGISAEKPFLSTSDI---QPSASSTLYNER-QEPVTVHYRFYWYDARGLEMHP 90
Query: 312 WNRITGCTLSA----TLYGFSIAYLAAPVVGLHL 401
R T+ A TLYG S +L A V L+L
Sbjct: 91 LERPRSVTIPAHSAVTLYG-SANFLGAHKVRLYL 123
>ref|NP_250272.1| (NC_002516) succinate dehydrogenase (C subunit) [Pseudomonas
aeruginosa]
pir||C83448 succinate dehydrogenase (C subunit) PA1581 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG04970.1|AE004586_8 (AE004586) succinate dehydrogenase (C subunit) [Pseudomonas
aeruginosa]
Length = 128
Score = 31.2 bits (69), Expect = 8.2
Identities = 36/118 (30%), Positives = 51/118 (42%), Gaps = 2/118 (1%)
Frame = +3
Query: 249 RPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLESLSIASFV 428
RPV+ L KL T + +S +RI+G L G ++ A E
Sbjct: 9 RPVNLDLRTIKLPVTAY-TSILHRISGVIL---FLGIAVLLFALDKSLSSEEGFEQVKAC 64
Query: 429 AGLPLA--VKGGLKFTLGFPFVYHAISGVKHLLYDAGKGFAKSTIIQADKYVWAASVL 596
PLA V GL L +YH ++GV+HL+ DAG G + K V A +V+
Sbjct: 65 LTSPLAKLVIWGLLSAL----LYHLVAGVRHLVMDAGVGETLEGGKRGSKIVIAIAVV 118
>sp|P46018|KPB2_RABIT Phosphorylase B kinase alpha regulatory chain, liver isoform
(Phosphorylase kinase alpha L subunit)
pir||S24109 phosphorylase kinase (EC 2.7.1.38) alpha chain, hepatic - rabbit
emb|CAA42952.1| (X60421) phosphorylase kinase [Oryctolagus cuniculus]
Length = 1235
Score = 31.2 bits (69), Expect = 8.2
Identities = 30/104 (28%), Positives = 47/104 (44%), Gaps = 25/104 (24%)
Frame = +3
Query: 72 QRVGVNALRS---------GAAKPFF--AQNISKSALAAGISTSSPTRATGSVKVSQEDG 218
+R G+N LRS A + FF +Q +S SA + + +S+P+ TG+ S G
Sbjct: 997 ERSGINRLRSEMKQMTRRFSADEQFFPVSQTVSSSAYSKSVRSSTPSSPTGT-SSSDSGG 1055
Query: 219 HQILVNQR-------------LNR-PVSPHLAIYKLEQTWFGSS 308
H I +R +NR PV + ++K+ Q G S
Sbjct: 1056 HHISWGERQGQWLRRRRLDGAINRVPVGFYQRVWKILQKCHGLS 1099
>gb|AAB31030.1| opsin Rh1 [Drosophila simulans, Peptide Partial, 321 aa]
Length = 321
Score = 31.2 bits (69), Expect = 8.2
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 153 AGISTSSPTRATGSVKVSQEDGHQILVNQRLNRPVSPHLAIYKLEQTWFGSSAW 314
AG+ ++ + S+ + D +Q++V RP++ LA+ K+ WF SS W
Sbjct: 102 AGLGSAFGCSSIWSMCMISLDRYQVIVKGMGGRPMTIPLALGKIAYIWFMSSIW 155
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: Mar 29, 2002 2:16 AM
Number of letters in database: 284,333,007
Number of sequences in database: 907,641
Lambda K H
0.312 0.125 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 279,078,079
Number of Sequences: 907641
Number of extensions: 5058484
Number of successful extensions: 11506
Number of sequences better than 10.0: 140
Number of HSP's better than 10.0 without gapping: 11196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11461
length of database: 284,333,007
effective HSP length: 115
effective length of database: 179,954,292
effective search space used: 17995429200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)